ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_675454.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.0
2gb|AC125045.4| Mus musculus BAC clone RP23-349M7 from chromosome... 40 3.0
3emb|CR388214.5| Zebrafish DNA sequence from clone CH211-269E4 in... 40 3.0
4emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, ... 40 3.0
5gb|AF149414.1|T19J18 Arabidopsis thaliana BAC T19J18 40 3.0

>ref|XM_675454.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7277.2), mRNA
          Length = 6453

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  aacaagcagcagcaacggaa 142
            ||||||||||||||||||||
Sbjct: 3507 aacaagcagcagcaacggaa 3526



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>gb|AC125045.4| Mus musculus BAC clone RP23-349M7 from chromosome 9, complete sequence
          Length = 205064

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aacagaagtggctcctctag 116
             ||||||||||||||||||||
Sbjct: 38566 aacagaagtggctcctctag 38547



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>emb|CR388214.5| Zebrafish DNA sequence from clone CH211-269E4 in linkage group 21,
            complete sequence
          Length = 138978

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   agaaaaactgcactaatcca 81
            ||||||||||||||||||||
Sbjct: 4709 agaaaaactgcactaatcca 4690



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>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13
          Length = 200001

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    aacaagcagcagcaacggaa 142
              ||||||||||||||||||||
Sbjct: 107738 aacaagcagcagcaacggaa 107757



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>gb|AF149414.1|T19J18 Arabidopsis thaliana BAC T19J18
          Length = 43175

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   aacaagcagcagcaacggaa 142
             ||||||||||||||||||||
Sbjct: 37435 aacaagcagcagcaacggaa 37454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,500,975
Number of Sequences: 3902068
Number of extensions: 1500975
Number of successful extensions: 24080
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24074
Number of HSP's gapped (non-prelim): 6
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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