ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK060594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
2ref|NM_193202.1| Oryza sativa (japonica cultivar-group), predic... 153 6e-34
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
4dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
5gb|AC159130.5| Mus musculus BAC clone RP23-401J13 from chromosom... 42 1.7
6ref|XM_390454.1| Gibberella zeae PH-1 chromosome 1 predicted pro... 42 1.7
7emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chr... 42 1.7
8gb|AC131708.3| Mus musculus BAC clone RP24-127P5 from chromosome... 42 1.7
9gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer... 40 6.6
10gb|AF158748.3| Homo sapiens map 2q37.3, genomic sequence 40 6.6
11ref|XM_451028.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A00682g ... 40 6.6
12gb|AC161603.4| Mus musculus BAC clone RP23-304M9 from chromosome... 40 6.6
13gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CI... 40 6.6
14emb|Z81095.1|CEF59F4 Caenorhabditis elegans Cosmid F59F4, comple... 40 6.6
15ref|XM_758356.1| Theileria parva strain Muguga chromosome 3 40S ... 40 6.6
16emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.6
17gb|AC161451.4| Mus musculus BAC clone RP23-405D12 from chromosom... 40 6.6
18emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on ch... 40 6.6
19gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 40 6.6
20gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, co... 40 6.6
21gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 6.6
22gb|BC102316.1| Bos taurus cDNA clone MGC:127580 IMAGE:7949886, c... 40 6.6
23gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete... 40 6.6
24gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380... 40 6.6
25gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, comp... 40 6.6
26gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complet... 40 6.6
27gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 40 6.6
28gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, co... 40 6.6
29emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chro... 40 6.6
30gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosom... 40 6.6 
>dbj|AK060594.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F04, full
           insert sequence
          Length = 1112

 Score =  165 bits (83), Expect = 2e-37
 Identities = 130/146 (89%)
 Strand = Plus / Minus

                                                                       
Query: 317 ttcctgcagatcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaa 376
           ||||||||| |||||||| | |||||||||||  |||||||||||||||||||| || ||
Sbjct: 755 ttcctgcaggtcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaa 696

                                                                       
Query: 377 ggcatgaacatccacttgcttcgatactttgtcatattgnacatcaatcttattgacctg 436
           |||||||||||| ||||| || ||||| ||||||||||| | ||||||||| ||||||||
Sbjct: 695 ggcatgaacatcgacttgttttgataccttgtcatattgtatatcaatcttgttgacctg 636

                                     
Query: 437 tcttggtttggcaataagatttactg 462
           ||||||||||| |||||||| |||||
Sbjct: 635 tcttggtttggtaataagatctactg 610



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                       
Query: 105 gattacttcacaagcggtgaagtcagaatgtatatgtcgatctcatccaacgtcgggcgg 164
           ||||||||||| || | |||||   ||||||||||||| || |||||||| || || || 
Sbjct: 967 gattacttcacgagagatgaagcaggaatgtatatgtcaatttcatccaatgttggacga 908

                                                                      
Query: 165 tcgcgtagcgtcaagctgtgttcatttgccagatgcaagagacaaatgaaatagaggtg 223
           || ||||  ||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 907 tcacgtaaggtcaagctgtgctcatttgccaaatgcaagaggcaaatgaaatataggtg 849
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>ref|NM_193202.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2055

 Score =  153 bits (77), Expect = 6e-34
 Identities = 121/136 (88%)
 Strand = Plus / Minus

                                                                        
Query: 327  tcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaaggcatgaaca 386
            |||||||| | |||||||||||  |||||||||||||||||||| || ||||||||||||
Sbjct: 1838 tcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaaggcatgaaca 1779

                                                                        
Query: 387  tccacttgcttcgatactttgtcatattgnacatcaatcttattgacctgtcttggtttg 446
            || ||||| || ||||| ||||||||||| | ||||||||| ||||||||||||||||||
Sbjct: 1778 tcgacttgttttgataccttgtcatattgtatatcaatcttgttgacctgtcttggtttg 1719

                            
Query: 447  gcaataagatttactg 462
            | |||||||| |||||
Sbjct: 1718 gtaataagatctactg 1703



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 81/94 (86%)
 Strand = Plus / Minus

                                                                        
Query: 130  gaatgtatatgtcgatctcatccaacgtcgggcggtcgcgtagcgtcaagctgtgttcat 189
            ||||||||||||| || |||||||| || || || || ||||  ||||||||||| ||||
Sbjct: 2032 gaatgtatatgtcaatttcatccaatgttggacgatcacgtaaggtcaagctgtgctcat 1973

                                              
Query: 190  ttgccagatgcaagagacaaatgaaatagaggtg 223
            |||||| ||||||||| ||||||||||| |||||
Sbjct: 1972 ttgccaaatgcaagaggcaaatgaaatataggtg 1939
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  115 bits (58), Expect = 1e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 327      tcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaaggcatgaaca 386
                |||||||| | |||||||||||  |||||||||||||||||||| || ||||||||||||
Sbjct: 19252173 tcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaaggcatgaaca 19252114

                                                                 
Query: 387      tccacttgcttcgatactttgtcatattgnacatcaatcttattgacct 435
                || ||||| || ||||| ||||||||||| | ||||||||| |||||||
Sbjct: 19252113 tcgacttgttttgataccttgtcatattgtatatcaatcttgttgacct 19252065



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                            
Query: 105      gattacttcacaagcggtgaagtcagaatgtatatgtcgatctcatccaacgtcgggcgg 164
                ||||||||||| || | |||||   ||||||||||||| || |||||||| || || || 
Sbjct: 19253285 gattacttcacgagagatgaagcaggaatgtatatgtcaatttcatccaatgttggacga 19253226

                                                                           
Query: 165      tcgcgtagcgtcaagctgtgttcatttgccagatgcaagagacaaatgaaatagaggtg 223
                || ||||  ||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 19253225 tcacgtaaggtcaagctgtgctcatttgccaaatgcaagaggcaaatgaaatataggtg 19253167



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 432      acctgtcttggtttggcaataagatttactg 462
                |||||||||||||||| |||||||| |||||
Sbjct: 19251168 acctgtcttggtttggtaataagatctactg 19251138
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>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1619_F12
          Length = 133028

 Score =  115 bits (58), Expect = 1e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                         
Query: 327   tcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaaggcatgaaca 386
             |||||||| | |||||||||||  |||||||||||||||||||| || ||||||||||||
Sbjct: 71794 tcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaaggcatgaaca 71735

                                                              
Query: 387   tccacttgcttcgatactttgtcatattgnacatcaatcttattgacct 435
             || ||||| || ||||| ||||||||||| | ||||||||| |||||||
Sbjct: 71734 tcgacttgttttgataccttgtcatattgtatatcaatcttgttgacct 71686



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                         
Query: 105   gattacttcacaagcggtgaagtcagaatgtatatgtcgatctcatccaacgtcgggcgg 164
             ||||||||||| || | |||||   ||||||||||||| || |||||||| || || || 
Sbjct: 72906 gattacttcacgagagatgaagcaggaatgtatatgtcaatttcatccaatgttggacga 72847

                                                                        
Query: 165   tcgcgtagcgtcaagctgtgttcatttgccagatgcaagagacaaatgaaatagaggtg 223
             || ||||  ||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 72846 tcacgtaaggtcaagctgtgctcatttgccaaatgcaagaggcaaatgaaatataggtg 72788



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 432   acctgtcttggtttggcaataagatttactg 462
             |||||||||||||||| |||||||| |||||
Sbjct: 70789 acctgtcttggtttggtaataagatctactg 70759
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>gb|AC159130.5| Mus musculus BAC clone RP23-401J13 from chromosome 6, complete sequence
          Length = 201901

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     ataaatacatgatacaaaatg 48
              |||||||||||||||||||||
Sbjct: 172217 ataaatacatgatacaaaatg 172197
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>ref|XM_390454.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG10278.1)
            partial mRNA
          Length = 1293

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 206  acaaatgaaatagaggtgtgg 226
            |||||||||||||||||||||
Sbjct: 1169 acaaatgaaatagaggtgtgg 1149
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>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a
              ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene for
              transcription factor AP-2 alpha (activating
              enhancer-binding protein 2 alpha), four novel genes, a
              mitochondrial ribosomal protein L47 (MRPL47) pseudogene and
              11 CpG islands, complete sequence
          Length = 180133

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 340    cagatgtatgaatgtgattccagag 364
              ||||||||||||| |||||||||||
Sbjct: 122707 cagatgtatgaatctgattccagag 122683
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>gb|AC131708.3| Mus musculus BAC clone RP24-127P5 from chromosome 6, complete sequence
          Length = 185214

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     ataaatacatgatacaaaatg 48
              |||||||||||||||||||||
Sbjct: 112100 ataaatacatgatacaaaatg 112080
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>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187484

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aaatacatgatacaaaatgt 49
             ||||||||||||||||||||
Sbjct: 70122 aaatacatgatacaaaatgt 70141
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>gb|AF158748.3| Homo sapiens map 2q37.3, genomic sequence
          Length = 65674

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   taagatttactggctcttct 470
             ||||||||||||||||||||
Sbjct: 35654 taagatttactggctcttct 35673
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>ref|XM_451028.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A00682g predicted mRNA
          Length = 2127

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  ctggtactgcatggaagatc 271
            ||||||||||||||||||||
Sbjct: 1115 ctggtactgcatggaagatc 1134
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>gb|AC161603.4| Mus musculus BAC clone RP23-304M9 from chromosome 15, complete sequence
          Length = 199419

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    ttgccagatgcaagagacaa 209
              ||||||||||||||||||||
Sbjct: 186176 ttgccagatgcaagagacaa 186195
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>gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-69G12, complete
             sequence
          Length = 77713

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    caaataaatacatgatacaa 44
             ||||||||||||||||||||
Sbjct: 24705 caaataaatacatgatacaa 24724
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>emb|Z81095.1|CEF59F4 Caenorhabditis elegans Cosmid F59F4, complete sequence
          Length = 20712

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 26   aaataaatacatgatacaaaatgt 49
            ||||||| ||||||||||||||||
Sbjct: 9371 aaataaaaacatgatacaaaatgt 9394
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>ref|XM_758356.1| Theileria parva strain Muguga chromosome 3 40S ribosomal protein S4
           (TP03_0429) partial mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  aataaatacatgatacaaaa 46
           ||||||||||||||||||||
Sbjct: 97  aataaatacatgatacaaaa 116
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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   ctggtactgcatggaagatc 271
             ||||||||||||||||||||
Sbjct: 68799 ctggtactgcatggaagatc 68818
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>gb|AC161451.4| Mus musculus BAC clone RP23-405D12 from chromosome 15, complete
             sequence
          Length = 190621

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   ttgccagatgcaagagacaa 209
             ||||||||||||||||||||
Sbjct: 30360 ttgccagatgcaagagacaa 30379
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>emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on chromosome 11 Contains
             part of a novel gene and a CpG island, complete sequence
          Length = 218414

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   tgcatggaagatcatgcagt 278
             ||||||||||||||||||||
Sbjct: 53837 tgcatggaagatcatgcagt 53818
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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    ttacttcacaagcggtgaag 126
              ||||||||||||||||||||
Sbjct: 510579 ttacttcacaagcggtgaag 510598
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>gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, complete sequence
          Length = 171191

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    cagatcatcagtcttagcag 342
              ||||||||||||||||||||
Sbjct: 118418 cagatcatcagtcttagcag 118437
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 417     acatcaatcttattgacctg 436
               ||||||||||||||||||||
Sbjct: 5435073 acatcaatcttattgacctg 5435054
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>gb|BC102316.1| Bos taurus cDNA clone MGC:127580 IMAGE:7949886, complete cds
          Length = 2043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 323  cagatcatcagtcttagcagatgt 346
            ||||||||||||||| ||||||||
Sbjct: 1464 cagatcatcagtctttgcagatgt 1487
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>gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete sequence
          Length = 136159

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     aataaatacatgatacaaaa 46
              ||||||||||||||||||||
Sbjct: 125046 aataaatacatgatacaaaa 125065
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>gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380F24, complete sequence
          Length = 134640

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     caaataaatacatgatacaa 44
              ||||||||||||||||||||
Sbjct: 112990 caaataaatacatgatacaa 113009
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>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence
          Length = 171048

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    caaataaatacatgatacaa 44
             ||||||||||||||||||||
Sbjct: 88601 caaataaatacatgatacaa 88582
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>gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complete sequence
          Length = 160111

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   taagatttactggctcttct 470
             ||||||||||||||||||||
Sbjct: 30758 taagatttactggctcttct 30739
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>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   cagatcatcagtcttagcag 342
             ||||||||||||||||||||
Sbjct: 12918 cagatcatcagtcttagcag 12937
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>gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, complete sequence
          Length = 181434

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   cagatcatcagtcttagcag 342
             ||||||||||||||||||||
Sbjct: 22455 cagatcatcagtcttagcag 22436
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>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete
             sequence
          Length = 226251

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tgaagtcagaatgtatatgt 141
             ||||||||||||||||||||
Sbjct: 69043 tgaagtcagaatgtatatgt 69024
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>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete
             sequence
          Length = 162175

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 303   tctatgccatctctttcctgcaga 326
             |||||||||||||||| |||||||
Sbjct: 45365 tctatgccatctcttttctgcaga 45342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,994,403
Number of Sequences: 3902068
Number of extensions: 3994403
Number of successful extensions: 69451
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69382
Number of HSP's gapped (non-prelim): 69
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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