| Clone Name | rbags24g09 |
|---|---|
| Clone Library Name | barley_pub |
>IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = -2 Query: 355 AKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWLXEAX 188 A+L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL EA Sbjct: 325 AQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAE 384 Query: 187 EE 182 EE Sbjct: 385 EE 386
>IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = -2 Query: 355 AKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWLXEAX 188 A+L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL EA Sbjct: 325 AQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAE 384 Query: 187 EE 182 EE Sbjct: 385 EE 386
>IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 431 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = -2 Query: 355 AKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWLXEAX 188 A+L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL EA Sbjct: 327 AQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAE 386 Query: 187 EE 182 EE Sbjct: 387 EE 388
>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 436 Score = 49.7 bits (117), Expect = 4e-06 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Frame = -2 Query: 358 DAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWLXEA 191 +A+L+ II+SLYD+DV ED+++ W K S++ +SF K + +P + WL EA Sbjct: 313 EAELLSKSAHIIKSLYDEDVCEEDSLISWGEKPSSKYVSKSFAKKIIENSQPVLNWLKEA 372 Query: 190 XEE 182 EE Sbjct: 373 EEE 375
>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 443 Score = 48.9 bits (115), Expect = 6e-06 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = -2 Query: 367 CYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFV-KALEPFVKWLXEA 191 C ++ +K ++++LYD DVL E+ I+LW++KG + S + K +PF+ WL A Sbjct: 377 CKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNA 436 Query: 190 XEE 182 E Sbjct: 437 ESE 439
>IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation factor 5-2| (eIF-5 2) Length = 437 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Frame = -2 Query: 400 ELELIYKVQTQCYEDA--KLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFV- 230 ++ L+ + T C ++ + +K ++++LYDQD++ E+ +L W+ KG + S V Sbjct: 357 QMHLLNSIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVW 416 Query: 229 KALEPFVKWLXEAXEE 182 K ++PFV+WL A E Sbjct: 417 KNVKPFVEWLQSAESE 432
>EI2BE_RABIT (P47823) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Frame = -2 Query: 451 VNAWAGLMNAFCTSGKLELELIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLW 272 + AW+ + + LE + ++ E L +++ Y ++LAE+TIL W Sbjct: 625 LKAWSPVFRNYIKRAADHLEALAAIEEFFLEHEALGTCIAKVLMGFYQLEILAEETILSW 684 Query: 271 F-RKGSNQKGRQ-SFVKALEPFVKWLXEAXEE 182 F ++ KGRQ + L+ F++WL EA EE Sbjct: 685 FGQRDVTDKGRQLRKNQQLQRFIQWLKEAEEE 716
>EI2BE_RAT (Q64350) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 716 Score = 46.2 bits (108), Expect = 4e-05 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Frame = -2 Query: 451 VNAWAGLMNAFCTSGKLELELIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLW 272 + AW+ + + LE + ++ E L+ +++ + Y ++LAE+TIL W Sbjct: 620 LKAWSPVFRNYIKRAADHLEALAAIEDFFLEHETLVPSLAKVLMAFYQLEILAEETILSW 679 Query: 271 F-RKGSNQKGRQ-SFVKALEPFVKWLXEAXEE 182 F ++ KG+Q + L+ F++WL EA EE Sbjct: 680 FSQRDITDKGQQLRKNQQLQRFIQWLREAEEE 711
>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1| (eIF-5 1) Length = 439 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = -2 Query: 400 ELELIYKVQTQCYE-DAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKA 224 ++ L+ +++ C + A+ K +I+ LYD+D+L ED I+ W+ KG +K Sbjct: 365 QMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGVKS---SPVLKN 421 Query: 223 LEPFVKWLXEAXEE 182 + PF++WL A E Sbjct: 422 VTPFIEWLQNAESE 435
>EI2BE_HUMAN (Q13144) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 45.1 bits (105), Expect = 9e-05 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Frame = -2 Query: 451 VNAWAGLMNAFCTSGKLELELIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLW 272 + AW+ + + LE + ++ E L +++ + Y ++LAE+TIL W Sbjct: 625 LKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAEETILSW 684 Query: 271 F-RKGSNQKGRQ-SFVKALEPFVKWLXEAXEE 182 F ++ + KG+Q + L+ F++WL EA EE Sbjct: 685 FSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEE 716
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 45.1 bits (105), Expect = 9e-05 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Frame = -2 Query: 451 VNAWAGLMNAFCTSGKLELELIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLW 272 + A A L+ + + EL+ +Y +Q + L +LYD+DV+ ED W Sbjct: 1505 LKARAKLLQKYLCDEQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSW 1564 Query: 271 --FRKGSNQKGRQSFVKALEPFVKWLXEAXEE 182 + + Q+G+ +K++ F KWL EA EE Sbjct: 1565 ESSKDPAEQQGKGVALKSVTAFFKWLREAEEE 1596
>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 451 Score = 45.1 bits (105), Expect = 9e-05 Identities = 20/56 (35%), Positives = 32/56 (57%) Frame = -2 Query: 346 MKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWLXEAXEEE 179 +K P ++++LYD D+L E+TI+ W+ VK +PFV+WL A +E Sbjct: 391 LKEVPVVLKALYDGDILDEETIVDWYNDAVAAGKDSQVVKNAKPFVEWLQSAESDE 446
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%) Frame = -2 Query: 439 AGLMNAFCTSGKLELELIYKVQTQCY---EDAKLMKLFPEIIRSLYDQDVLAEDTILLW- 272 A L+ + + EL+ +Y +Q + A L+++F + +LYD+DV+ ED W Sbjct: 1508 ARLLQKYLCDEQKELQALYALQALVVTLEQPANLLRMFFD---ALYDEDVVKEDAFYSWE 1564 Query: 271 -FRKGSNQKGRQSFVKALEPFVKWLXEAXEEE 179 + + Q+G+ +K++ F WL EA +EE Sbjct: 1565 SSKDPAEQQGKGVALKSVTAFFNWLREAEDEE 1596
>EI2BE_CANAL (P87163) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD6) (GCD complex subunit GCD6) (Fragment) Length = 189 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = -2 Query: 325 IRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWLXEAXEEE 179 ++S YD +V+ E+ IL W+ G N + R K F+ WL EA EE+ Sbjct: 136 VKSFYDMEVVEEENILKWWNDGENDEVRTLAAK----FITWLQEADEED 180
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 40.4 bits (93), Expect = 0.002 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%) Frame = -2 Query: 400 ELELIYKVQTQCY---EDAKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQS 236 EL+ +Y +Q + A L+++F + LYD++V++ED W + + Q G+ Sbjct: 1507 ELQALYALQASIVKLDQPANLLRMFFDC---LYDEEVISEDAFYKWESSKDPAEQNGKGV 1563 Query: 235 FVKALEPFVKWLXEAXEE 182 +K++ F WL EA EE Sbjct: 1564 ALKSVTAFFTWLREAEEE 1581
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Frame = -2 Query: 361 EDAKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEPFVKWLXEAX 188 + A L+++F + +LYD+DV+ E+ W + + Q+G+ +K++ F KWL E Sbjct: 1339 QPANLLRMFFD---ALYDEDVVKEEAFYSWESSKDPAEQQGKGVALKSVTAFFKWLREVE 1395 Query: 187 EEE 179 EEE Sbjct: 1396 EEE 1398
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%) Frame = -2 Query: 400 ELELIYKVQTQCY---EDAKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQS 236 EL+ +Y +Q + A L+++F + LYD++V++ED W + + Q G+ Sbjct: 1501 ELQALYALQASIVKLDQPANLLRMFFDC---LYDEEVISEDAFYKWESSKDPAEQAGKGV 1557 Query: 235 FVKALEPFVKWLXEAXEE 182 +K++ F WL EA EE Sbjct: 1558 ALKSVTAFFTWLREAEEE 1575
>IF5_SCHPO (Q09689) Probable eukaryotic translation initiation factor 5| (eIF-5) Length = 395 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 6/90 (6%) Frame = -2 Query: 433 LMNAFCTSGKLELELIYKVQTQCYEDAKLMKL--FPEIIRSLYDQDVLAEDTILLWFRKG 260 L CT+ K E L+ + + E+ +L+ + P+++ +Y D++++D W K Sbjct: 292 LFKKLCTTDKHERALLGGFE-RLMENTELVHIDVVPKVLLEIYQNDLVSDDMFEKWGAKA 350 Query: 259 S----NQKGRQSFVKALEPFVKWLXEAXEE 182 S +++ + +A EPF+ WL EA +E Sbjct: 351 SKKYVSRETSKKIHEAAEPFLTWLAEASDE 380
>EI2BE_YEAST (P32501) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD6) (GCD complex subunit GCD6) Length = 712 Score = 37.4 bits (85), Expect = 0.019 Identities = 22/70 (31%), Positives = 35/70 (50%) Frame = -2 Query: 391 LIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPF 212 ++ K+ Q ++ L+ LF ++ SLYD D++ ED I W+ S K + Sbjct: 639 IMEKIVEQSFDKPDLI-LFSALV-SLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKW 696 Query: 211 VKWLXEAXEE 182 V+WL A EE Sbjct: 697 VEWLQNADEE 706
>IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 405 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = -2 Query: 361 EDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSN----QKGRQSFVKALEPFVKWLXE 194 E L+ L P+I+ LY+ D+++E+ I+ + K S ++ + +A +PF+ WL Sbjct: 335 EHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLET 394 Query: 193 AXEEE 179 A ++ Sbjct: 395 AESDD 399
>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 464 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Frame = -2 Query: 349 LMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALE----PFVKWLXEAXEE 182 LM I + YD D+L E IL W +K S + ++ + PFV WL A EE Sbjct: 352 LMSKVAGIFKLFYDLDILDEAVILEWAQKVSKRHVSKNIAAEIHEKAMPFVLWLKNAEEE 411
>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 906 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -2 Query: 403 LELELIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQ-KGRQSFVK 227 L++ +Y +Q CY + + YD +++ E+ L W + + G+ + Sbjct: 825 LQVSALYALQVHCYNSSFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALF 884 Query: 226 ALEPFVKWLXEAXEEE 179 + ++ WL A EEE Sbjct: 885 QVNQWLTWLETAEEEE 900
>NADE_MYCLE (Q9CBZ6) Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+)| synthase [glutamine-hydrolyzing]) Length = 680 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = -2 Query: 388 IYKVQTQCYEDAKLMKLFPEIIRSLYD-QDVLAEDTIL 278 + ++ QC++D + +FPE+ S Y +D+L +D +L Sbjct: 33 VLRLARQCHDDGVAVAVFPELTLSGYSIEDILLQDLLL 70
>SIL1_DEBHA (Q6BTV5) Nucleotide exchange factor SIL1 precursor| Length = 427 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -2 Query: 316 LYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWLXEAXEEE*RG 170 L D V +ED L+F K S + +K + F++WL + E +G Sbjct: 338 LADSGVASEDQFKLYFNKLSEVHSQDKSLKPSKAFMEWLSKEAELRSKG 386
>ARGC_SYNP6 (Q5N5V5) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 352 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -2 Query: 367 CYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL 221 CY A L+ L P + + L D D TI++ + G++ GRQ+ AL Sbjct: 155 CYPTASLLALAPALKQGLIDPD-----TIVIDAKSGTSGAGRQAKTNAL 198
>TALA_SV40 (P03070) Large T antigen| Length = 708 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 362 ITLCLDLVYEFQF*LSTCAKCIHKTSPS 445 + L L + EFQ+ C KCI K PS Sbjct: 285 VLLLLGMYLEFQYSFEMCLKCIKKEQPS 312
>FANCC_RAT (O35870) Fanconi anemia group C protein homolog (Protein FACC)| Length = 557 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -2 Query: 247 GRQSFVKALEPFVKWLXEAXEEE*RGTVLALK*VFPYT-PCL 125 G + + AL+ F L EA +E + ALK FPY+ PCL Sbjct: 308 GAPAVLAALQIFTSCLVEALRKENKQLKFALKTYFPYSAPCL 349
>DVA1_DICVI (Q24702) DVA-1 polyprotein precursor (Antigen 1) (Allergen 1)| (Nematode polyprotein allergen DVA-1) (NPA DVA-1) [Contains: DVA-1 unit A; DVA-1 unit B; DVA-1 unit C; DVA-1 unit D; DVA-1 unit E; DVA-1 unit F; DVA-1 unit G; DVA-1 unit H; DVA-1 un Length = 1557 Score = 28.5 bits (62), Expect = 9.1 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 27/101 (26%) Frame = -2 Query: 400 ELELIYKVQTQCYEDAK----------------------LMKLFPEIIRSLYDQ-----D 302 ++EL K ++QCY+ K LMK E+ L + + Sbjct: 469 KIELKAKFKSQCYDWVKEVATSEEMNDIMKMHESKNHSDLMKRLTELENRLTEDQKHTIE 528 Query: 301 VLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWLXEAXEEE 179 + E + LW + +N++ +QS +A++ ++ W+ + +E+ Sbjct: 529 HVREVCLGLWEVQNTNKQHKQSLEEAMDAYLSWMTDEDKEK 569 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,632,522 Number of Sequences: 219361 Number of extensions: 1249253 Number of successful extensions: 2760 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2751 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)