ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466987.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.19
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.19
3dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.19
4dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.19
5dbj|AK069956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.19
6dbj|AK061368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.19
7gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosom... 42 0.74
8gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome... 42 0.74
9gb|AC098885.3| Mus musculus BAC clone RP23-122L17 from 5, comple... 40 2.9
10gb|DQ127563.1| Emiliania huxleyi virus 163 clone new49.seq parti... 40 2.9
11gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, com... 40 2.9
12gb|AC149054.3| Mus musculus BAC clone RP23-443H21 from 18, compl... 40 2.9

>ref|XM_466987.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1102

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 101 gcgccttcctccacggtcagatccccggtg 130
           |||||||||||||| ||||| |||||||||
Sbjct: 927 gcgccttcctccaccgtcagctccccggtg 898



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 101      gcgccttcctccacggtcagatccccggtg 130
                |||||||||||||| ||||| |||||||||
Sbjct: 25754805 gcgccttcctccaccgtcagctccccggtg 25754776



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>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0010C01
          Length = 186185

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 101    gcgccttcctccacggtcagatccccggtg 130
              |||||||||||||| ||||| |||||||||
Sbjct: 157481 gcgccttcctccaccgtcagctccccggtg 157452



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>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1112_G03
          Length = 106401

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 101  gcgccttcctccacggtcagatccccggtg 130
            |||||||||||||| ||||| |||||||||
Sbjct: 1411 gcgccttcctccaccgtcagctccccggtg 1382



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>dbj|AK069956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036L11, full
            insert sequence
          Length = 2747

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 101  gcgccttcctccacggtcagatccccggtg 130
            |||||||||||||| ||||| |||||||||
Sbjct: 2401 gcgccttcctccaccgtcagctccccggtg 2372



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>dbj|AK061368.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D09, full
           insert sequence
          Length = 1102

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 101 gcgccttcctccacggtcagatccccggtg 130
           |||||||||||||| ||||| |||||||||
Sbjct: 927 gcgccttcctccaccgtcagctccccggtg 898



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>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete
             sequence
          Length = 198193

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     tacaatggctacaggaaggat 25
             |||||||||||||||||||||
Sbjct: 24281 tacaatggctacaggaaggat 24301



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>gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome 14, complete sequence
          Length = 195696

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      tacaatggctacaggaaggat 25
              |||||||||||||||||||||
Sbjct: 184811 tacaatggctacaggaaggat 184831



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>gb|AC098885.3| Mus musculus BAC clone RP23-122L17 from 5, complete sequence
          Length = 211112

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 137    ttgatgtctgtcttaacatatcca 160
              |||||||||||||| |||||||||
Sbjct: 188662 ttgatgtctgtcttgacatatcca 188639



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>gb|DQ127563.1| Emiliania huxleyi virus 163 clone new49.seq partial sequence
          Length = 4132

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   gatgcttctactgtgccgtt 42
            ||||||||||||||||||||
Sbjct: 3709 gatgcttctactgtgccgtt 3690



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>gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, complete sequence
          Length = 157682

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 137    ttgatgtctgtcttaacatatcca 160
              |||||||||||||| |||||||||
Sbjct: 121795 ttgatgtctgtcttgacatatcca 121818



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>gb|AC149054.3| Mus musculus BAC clone RP23-443H21 from 18, complete sequence
          Length = 210613

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     atggctacaggaaggatgct 28
             ||||||||||||||||||||
Sbjct: 87669 atggctacaggaaggatgct 87650


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,426,671
Number of Sequences: 3902068
Number of extensions: 1426671
Number of successful extensions: 26126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26101
Number of HSP's gapped (non-prelim): 25
length of query: 228
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 206
effective length of database: 17,147,199,772
effective search space: 3532323153032
effective search space used: 3532323153032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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