| Clone Name | rbags24g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466987.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1102 Score = 44.1 bits (22), Expect = 0.19 Identities = 28/30 (93%) Strand = Plus / Minus Query: 101 gcgccttcctccacggtcagatccccggtg 130 |||||||||||||| ||||| ||||||||| Sbjct: 927 gcgccttcctccaccgtcagctccccggtg 898
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.19 Identities = 28/30 (93%) Strand = Plus / Minus Query: 101 gcgccttcctccacggtcagatccccggtg 130 |||||||||||||| ||||| ||||||||| Sbjct: 25754805 gcgccttcctccaccgtcagctccccggtg 25754776
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0010C01 Length = 186185 Score = 44.1 bits (22), Expect = 0.19 Identities = 28/30 (93%) Strand = Plus / Minus Query: 101 gcgccttcctccacggtcagatccccggtg 130 |||||||||||||| ||||| ||||||||| Sbjct: 157481 gcgccttcctccaccgtcagctccccggtg 157452
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 44.1 bits (22), Expect = 0.19 Identities = 28/30 (93%) Strand = Plus / Minus Query: 101 gcgccttcctccacggtcagatccccggtg 130 |||||||||||||| ||||| ||||||||| Sbjct: 1411 gcgccttcctccaccgtcagctccccggtg 1382
>dbj|AK069956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036L11, full insert sequence Length = 2747 Score = 44.1 bits (22), Expect = 0.19 Identities = 28/30 (93%) Strand = Plus / Minus Query: 101 gcgccttcctccacggtcagatccccggtg 130 |||||||||||||| ||||| ||||||||| Sbjct: 2401 gcgccttcctccaccgtcagctccccggtg 2372
>dbj|AK061368.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D09, full insert sequence Length = 1102 Score = 44.1 bits (22), Expect = 0.19 Identities = 28/30 (93%) Strand = Plus / Minus Query: 101 gcgccttcctccacggtcagatccccggtg 130 |||||||||||||| ||||| ||||||||| Sbjct: 927 gcgccttcctccaccgtcagctccccggtg 898
>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete sequence Length = 198193 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tacaatggctacaggaaggat 25 ||||||||||||||||||||| Sbjct: 24281 tacaatggctacaggaaggat 24301
>gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome 14, complete sequence Length = 195696 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tacaatggctacaggaaggat 25 ||||||||||||||||||||| Sbjct: 184811 tacaatggctacaggaaggat 184831
>gb|AC098885.3| Mus musculus BAC clone RP23-122L17 from 5, complete sequence Length = 211112 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 ttgatgtctgtcttaacatatcca 160 |||||||||||||| ||||||||| Sbjct: 188662 ttgatgtctgtcttgacatatcca 188639
>gb|DQ127563.1| Emiliania huxleyi virus 163 clone new49.seq partial sequence Length = 4132 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gatgcttctactgtgccgtt 42 |||||||||||||||||||| Sbjct: 3709 gatgcttctactgtgccgtt 3690
>gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, complete sequence Length = 157682 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ttgatgtctgtcttaacatatcca 160 |||||||||||||| ||||||||| Sbjct: 121795 ttgatgtctgtcttgacatatcca 121818
>gb|AC149054.3| Mus musculus BAC clone RP23-443H21 from 18, complete sequence Length = 210613 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 atggctacaggaaggatgct 28 |||||||||||||||||||| Sbjct: 87669 atggctacaggaaggatgct 87650 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,426,671 Number of Sequences: 3902068 Number of extensions: 1426671 Number of successful extensions: 26126 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26101 Number of HSP's gapped (non-prelim): 25 length of query: 228 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 206 effective length of database: 17,147,199,772 effective search space: 3532323153032 effective search space used: 3532323153032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)