Clone Information

BLAST Search Result

Clone Name	rbaal1c22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.2...	70	1e-12
2	FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.2...	67	1e-11
3	FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.2...	65	6e-11
4	FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3....	64	1e-10
5	FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.2...	62	5e-10
6	FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.2...	61	9e-10
7	FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3....	58	8e-09
8	FTSH2_SYNY3 (P73179) Cell division protein ftsH homolog 2 (EC 3....	52	3e-07
9	YME1_CAEEL (P54813) Protein YME1 homolog (EC 3.4.24.-)	49	5e-06
10	YME1_YEAST (P32795) Protein YME1 (EC 3.4.24.-) (TAT-binding homo...	47	1e-05
11	FTSH_AQUAE (O67077) Cell division protein ftsH homolog (EC 3.4.2...	47	2e-05
12	FTSH3_SYNY3 (P73437) Cell division protein ftsH homolog 3 (EC 3....	46	3e-05
13	FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chlor...	44	9e-05
14	FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chlor...	44	1e-04
15	FTSH_BUCAP (Q8K9G8) Cell division protein ftsH (EC 3.4.24.-)	44	2e-04
16	YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4....	43	2e-04
17	YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3....	43	2e-04
18	FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.2...	43	2e-04
19	FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloropl...	43	2e-04
20	YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3....	43	2e-04
21	FTSH_MYCPU (Q98PE4) Cell division protein ftsH homolog (EC 3.4.2...	43	3e-04
22	FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)	43	3e-04
23	FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)	43	3e-04
24	FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)	43	3e-04
25	FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.2...	43	3e-04
26	FTSH_MYCGE (P47695) Cell division protein ftsH homolog (EC 3.4.2...	42	3e-04
27	FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)	42	3e-04
28	FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)	42	3e-04
29	FTSH_MYCPN (P75120) Cell division protein ftsH homolog (EC 3.4.2...	42	4e-04
30	FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloropl...	42	4e-04
31	FTSH_BUCAI (P57462) Cell division protein ftsH (EC 3.4.24.-)	42	4e-04
32	FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.2...	42	6e-04
33	FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.2...	42	6e-04
34	FTSH_MYCTU (P0A4V8) Cell division protein ftsH homolog (EC 3.4.2...	41	8e-04
35	FTSH_MYCBO (P0A4V9) Cell division protein ftsH homolog (EC 3.4.2...	41	8e-04
36	FTSH1_HAEIN (P71377) Cell division protein ftsH homolog 1 (EC 3....	40	0.002
37	YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)	40	0.002
38	FTSH2_HAEIN (P45219) Cell division protein ftsH homolog 2 (EC 3....	40	0.002
39	FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.2...	40	0.002
40	FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloropl...	40	0.002
41	AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Parapleg...	39	0.004
42	FTSH_BUCBP (Q89AF2) Cell division protein ftsH (EC 3.4.24.-)	38	0.006
43	AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)	37	0.011
44	FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.2...	36	0.032
45	FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.2...	36	0.032
46	SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia...	35	0.054
47	RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes as...	35	0.054
48	FTSH_HELFE (O32617) Cell division protein ftsH homolog (EC 3.4.2...	35	0.071
49	FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.2...	34	0.093
50	AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)	34	0.12
51	FTSH_HELPJ (Q9ZM66) Cell division protein ftsH homolog (EC 3.4.2...	33	0.16
52	FTSH_HELPY (P71408) Cell division protein ftsH homolog (EC 3.4.2...	32	0.35
53	AFG3_YEAST (P39925) Mitochondrial respiratory chain complexes as...	31	0.78
54	HNF6_RAT (P70512) Hepatocyte nuclear factor 6 (HNF-6) (One cut d...	30	1.3
55	HNF6_MOUSE (O08755) Hepatocyte nuclear factor 6 (HNF-6) (One cut...	30	1.3
56	HNF6_HUMAN (Q9UBC0) Hepatocyte nuclear factor 6 (HNF-6) (One cut...	30	1.3
57	HRPK_PSESY (P41501) Pathogenicity locus protein hrpK	28	6.6
58	YHCN_BACSU (P54598) Lipoprotein yhcN precursor	28	6.6
59	CX017_MOUSE (Q8C3F2) Protein CXorf17 homolog	28	6.6

>FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 644

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 35/55 (63%), Positives = 44/55 (80%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDAAQSGDVIM 30
           A E+VIFGEPEVTTGA+ DLQQ+T LA+QMV  FGMS+IGP +L D + +G V +
Sbjct: 507 AAEQVIFGEPEVTTGASSDLQQVTNLARQMVTRFGMSNIGPLALEDES-TGQVFL 560

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>FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 631

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 35/62 (56%), Positives = 44/62 (70%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDAAQSGDVIMRMMAR 15
           A EEV+FG PEVTTGA  DLQQ+T +A+QMV  FGMS+IGP SL ++  S   + R M  
Sbjct: 494 AAEEVVFGLPEVTTGAGNDLQQVTSMARQMVTRFGMSNIGPLSL-ESQNSDPFLGRTMGS 552

Query: 14  NS 9
           +S
Sbjct: 553 SS 554

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>FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 628

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 30/44 (68%), Positives = 36/44 (81%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSL 63
           A EE+IFG+ EVTTGA+ DLQQ+T +A+QMV  FGMS IGP SL
Sbjct: 494 AAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSKIGPLSL 537

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>FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3.4.24.-)|
          Length = 627

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 31/55 (56%), Positives = 41/55 (74%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDAAQSGDVIM 30
           A EE +FG+ EVTTGA GDLQQ+T +A+QMV  FGMS++GP SL   +  G+V +
Sbjct: 493 AAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMSNLGPISL--ESSGGEVFL 545

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>FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 614

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 29/64 (45%), Positives = 44/64 (68%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDAAQSGDVIMRMMAR 15
           A EE++FG PEVT GAA D++Q+T +A+QMV  FGMS +GP  L +++    +   +M R
Sbjct: 492 AMEEIVFGLPEVTIGAANDIKQVTFMARQMVTKFGMSKVGPICLENSSSEVFIGRDLMGR 551

Query: 14  NSMS 3
           + +S
Sbjct: 552 HELS 555

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>FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP)|
          Length = 603

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 28/44 (63%), Positives = 33/44 (75%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSL 63
           A EE +FG  EVTTGA+ DLQQ+T LA+QMV  FGMS +GP  L
Sbjct: 475 AAEEAVFGNAEVTTGASNDLQQVTNLARQMVTRFGMSSLGPLCL 518

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>FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3.4.24.-)|
          Length = 616

 Score = 57.8 bits (138), Expect = 8e-09
 Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+IFGE EVTTGA+ DLQQ+  +A+QMV  FGMSD +GP +L    Q G V +
Sbjct: 488 EEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDRLGPVAL--GRQGGGVFL 539

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>FTSH2_SYNY3 (P73179) Cell division protein ftsH homolog 2 (EC 3.4.24.-)|
          Length = 665

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDAAQSGD 39
           EEVIFG+ EVTTGA  D+++IT LA+QMV   GMS +G   L+   + GD
Sbjct: 534 EEVIFGDDEVTTGAGNDIEKITYLARQMVTKLGMSSLG---LVALEEEGD 580

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>YME1_CAEEL (P54813) Protein YME1 homolog (EC 3.4.24.-)|
          Length = 676

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD 81
           EE+IFG+ +VTTGAA DL + T LA QMV  FGMSD
Sbjct: 524 EELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSD 559

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>YME1_YEAST (P32795) Protein YME1 (EC 3.4.24.-) (TAT-binding homolog 11) (OSD1|
           protein)
          Length = 747

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS-DIGPWSLMDAAQSGDVIMRMMARN 12
           EE+I+G+   T+G   DLQ  TG A+ MV  +GMS D+GP +L +  +S    +R +A N
Sbjct: 602 EELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMSDDVGPVNLSENWESWSNKIRDIADN 661

Query: 11  SM 6
            +
Sbjct: 662 EV 663

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>FTSH_AQUAE (O67077) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 634

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAA 51
           A EEV FG+  +TTGA  DLQ+ T LA +MV  +GMSD +GP ++   A
Sbjct: 478 AAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVA 526

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>FTSH3_SYNY3 (P73437) Cell division protein ftsH homolog 3 (EC 3.4.24.-)|
          Length = 628

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDI-GP 72
           A EE++F    +TTGAA DLQ+ T LA+QMV T+GMS + GP
Sbjct: 499 AAEEIVFDS--ITTGAANDLQRATDLAEQMVTTYGMSKVLGP 538

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>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 704

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           EEVIFG+  VTTGA+ D  Q++ +A+QMV  FG S
Sbjct: 577 EEVIFGDENVTTGASNDFMQVSRVARQMVERFGFS 611

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>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 716

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           EEVIFG+  VTTGA+ D  Q++ +A+QM+  FG S
Sbjct: 589 EEVIFGDENVTTGASNDFMQVSRVARQMIERFGFS 623

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>FTSH_BUCAP (Q8K9G8) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 613

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA  D++  T LA+ MV  +G SD +GP  L+ A + G+V +
Sbjct: 476 EEIIYGSQNVSTGAFNDIKVATNLARNMVTQWGFSDKLGP--LLYAEEEGEVFL 527

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>YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4)
          Length = 715

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD 81
           EE+IFG   +TTGA+ D    T +AK+MV  FGMS+
Sbjct: 603 EELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE 638

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>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD 81
           EE+IFG   +TTGA+ D    T +AK+MV  FGMS+
Sbjct: 603 EELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE 638

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>FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+IFGE  V+TGA  D Q+ T +A++MV  FGMS+ +GP      +Q G V +
Sbjct: 485 EEIIFGE--VSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQ-FGQSQGGQVFL 535

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>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (Fragment)
          Length = 662

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           EEVIFGE  VTTGA+ D  Q++ +A+QMV   G S
Sbjct: 557 EEVIFGEDNVTTGASNDFMQVSRVARQMVERLGFS 591

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>YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4) (Presenilin-associated metalloprotease)
           (PAMP)
          Length = 773

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD 81
           EE+IFG   +TTGA+ D    T +AK+MV  FGMS+
Sbjct: 661 EELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSE 696

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>FTSH_MYCPU (Q98PE4) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 725

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 30/41 (73%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGP 72
           A E +I+G+  ++TGA+ D+ + T +A++MV  +GMS +GP
Sbjct: 534 AAEMIIYGKENISTGASDDISRATKIARKMVTEWGMSALGP 574

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>FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA+ D++  T LA+ MV  +G S+ +GP  L+ A + G+V +
Sbjct: 476 EEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527

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>FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA+ D++  T LA+ MV  +G S+ +GP  L+ A + G+V +
Sbjct: 476 EEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527

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>FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA+ D++  T LA+ MV  +G S+ +GP  L+ A + G+V +
Sbjct: 476 EEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527

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>FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 679

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIMRMMARN 12
           EEV FGE  V+TGA  D Q+ TG+A++MV  +GMS+ +GP   + +   G V +    +N
Sbjct: 490 EEVTFGE--VSTGAHNDFQRATGIARKMVTEYGMSEKLGPMQFI-SGSGGQVFLGRDIQN 546

Query: 11  SMS 3
             +
Sbjct: 547 EQN 549

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>FTSH_MYCGE (P47695) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 702

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIG 75
           A EE I+G  E+TTGA+ D  + T +A+ MV   GMS +G
Sbjct: 554 AAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMSKLG 593

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>FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA+ D++  T LA+ MV  +G S+ +GP  L+ A + G+V +
Sbjct: 476 EEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527

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>FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA+ D++  T LA+ MV  +G S+ +GP  L+ A + G+V +
Sbjct: 476 EEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFL 527

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>FTSH_MYCPN (P75120) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 709

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIG 75
           A EE I+G  E+TTGA+ D  + T +A+ MV   GMS +G
Sbjct: 551 AAEEEIYGPLEITTGASSDFYKATNIARAMVTQLGMSKLG 590

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>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (DS9)
          Length = 714

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           EEVIFG+  VTTGA+ D  Q++ +A+QMV   G S
Sbjct: 580 EEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFS 614

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>FTSH_BUCAI (P57462) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 611

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA  D++  T LAK MV  +G S+ +GP  L+ A + G++ +
Sbjct: 476 EEIIYGAKNVSTGAYNDIKIATSLAKNMVTQWGFSEKLGP--LLYAEEEGEIFL 527

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>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGP 72
           EE+IFG  +VT+GA+ D++  T +A+ MV   G+SD IGP
Sbjct: 479 EEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGP 518

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>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGP 72
           EE+IFG  +VT+GA+ D++  T +A+ MV   G+SD IGP
Sbjct: 479 EEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSDLIGP 518

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>FTSH_MYCTU (P0A4V8) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 760

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           A EE++F EP  TTGA  D++Q T +A+ MV  FGMS
Sbjct: 485 AAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMS 519

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>FTSH_MYCBO (P0A4V9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 760

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           A EE++F EP  TTGA  D++Q T +A+ MV  FGMS
Sbjct: 485 AAEELVFREP--TTGAVSDIEQATKIARSMVTEFGMS 519

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>FTSH1_HAEIN (P71377) Cell division protein ftsH homolog 1 (EC 3.4.24.-)|
          Length = 635

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM-RMMAR 15
           E++I+GE  ++TGA+ D++  T +A+ MV  +G S+ +GP  ++     G+V + R MA+
Sbjct: 475 EDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGP--ILYTEDEGEVFLGRSMAK 532

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>YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)|
          Length = 662

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMD 57
           EE++FG  +VT GAA D ++ T LA+ MV  FG S  IGP  + D
Sbjct: 487 EELVFGADKVTNGAADDFRKATILAQNMVKRFGFSSKIGPRVIPD 531

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>FTSH2_HAEIN (P45219) Cell division protein ftsH homolog 2 (EC 3.4.24.-)|
          Length = 381

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGPWSLMDAAQSGDVIM-RMMAR 15
           E++I+GE  ++TGA+ D++  T +A+ MV  +G S+ +GP  ++     G+V + R MA+
Sbjct: 221 EDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGP--ILYTEDEGEVFLGRSMAK 278

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>FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 787

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           A EE++F EP  TTGA  D+++ T +A+ MV  FGMS
Sbjct: 485 AAEELVFREP--TTGAVSDIEKATKIARSMVTEFGMS 519

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>FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-)
          Length = 706

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -1

Query: 185 EVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           E +FG+  VTTGA+ D  Q++ +A+QMV  FG S
Sbjct: 580 EEVFGQDNVTTGASNDFMQVSRVARQMVERFGFS 613

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>AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegin-like|
           protein)
          Length = 797

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDAAQSGDVIM 30
           A EE+ FG   +TTGA  DL+++T  A   +V FGM++       D  + GD+++
Sbjct: 633 ASEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL 685

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>FTSH_BUCBP (Q89AF2) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 610

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS-DIGPWSLMDAAQSGDVIM 30
           EE+I+G   V+TGA  D++  T LA+ MV  +G S  +GP  L+ + + G++ +
Sbjct: 476 EEIIYGVNNVSTGAHNDIKVATNLARNMVTQWGFSKKLGP--LLYSEEEGEIFL 527

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>AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)|
          Length = 802

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDAAQSGDVIM 30
           EE+ FG   +TTGA  DL+++T  A   +V FGM++       D  + GD+++
Sbjct: 634 EEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVL 684

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>FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 652

 Score = 35.8 bits (81), Expect = 0.032
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGP 72
           EE+IF     TTGA+ D +Q T +A+ MV  +GMS+ +GP
Sbjct: 511 EEIIFNVQ--TTGASNDFEQATQMARAMVTEYGMSEKLGP 548

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>FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 652

 Score = 35.8 bits (81), Expect = 0.032
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD-IGP 72
           EE+IF     TTGA+ D +Q T +A+ MV  +GMS+ +GP
Sbjct: 511 EEIIFNVQ--TTGASNDFEQATQMARAMVTEYGMSEKLGP 548

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>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)|
          Length = 795

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -1

Query: 164 EVTTGAAGDLQQITGLAKQMVVTFGMS-DIGPWSLMDAAQ 48
           EVT+GA  DL+++T +A  MV  FGM+  IGP S  +A +
Sbjct: 642 EVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQE 681

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>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes assembly protein|
           RCA1 (EC 3.4.24.-) (TAT-binding homolog 12)
          Length = 825

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPW 69
           EE+ F  P VT+GA+ D +++T +A  MV   GMSD   W
Sbjct: 675 EELHF--PSVTSGASDDFKKVTSMATAMVTELGMSDKIGW 712

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>FTSH_HELFE (O32617) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 638

 Score = 34.7 bits (78), Expect = 0.071
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDI 78
           A E+V     E++TGA+ DL++ T + K MV  +GMSD+
Sbjct: 501 AAEDVFL--QEISTGASNDLERATDIIKGMVSYYGMSDV 537

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>FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 609

 Score = 34.3 bits (77), Expect = 0.093
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD 81
           A E V FGE  V+TGA  D+ + T + ++M+  +GMS+
Sbjct: 463 AAEFVAFGE--VSTGAGNDISRATDIVRKMITDYGMSE 498

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>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)|
          Length = 663

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD 81
           E++ FG+  +TTGA  DL+++T  A   +V FGMS+
Sbjct: 501 EQLFFGQ--ITTGAQDDLRKVTQSAYAQIVQFGMSE 534

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>FTSH_HELPJ (Q9ZM66) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 632

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDI 78
           A EEV     E++TGA+ DL++ T + K MV  +GMS +
Sbjct: 495 AAEEVFL--EEISTGASNDLERATDIIKGMVSYYGMSSV 531

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>FTSH_HELPY (P71408) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 632

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -1

Query: 194 AXEEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDI 78
           A E+V     E++TGA+ DL++ T + K MV  +GMS +
Sbjct: 495 AAEDVFL--EEISTGASNDLERATDIIKGMVSYYGMSSV 531

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>AFG3_YEAST (P39925) Mitochondrial respiratory chain complexes assembly protein|
           AFG3 (EC 3.4.24.-) (TAT-binding homolog 10)
          Length = 761

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -1

Query: 188 EEVIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMS 84
           EE+ F  P VT+GA  D +++T +A  MV + GMS
Sbjct: 620 EELHF--PSVTSGAHDDFKKVTQMANAMVTSLGMS 652

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>HNF6_RAT (P70512) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family|
           member 1)
          Length = 465

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +3

Query: 6   HGVPSHHPHDHVPA-----LCGVHQRPRPDVRHAE 95
           +G+P HHPH H+ A     L G  + P P V  A+
Sbjct: 245 NGLPPHHPHAHLNAQGHGQLLGTAREPNPSVTGAQ 279

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>HNF6_MOUSE (O08755) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family|
           member 1)
          Length = 465

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +3

Query: 6   HGVPSHHPHDHVPA-----LCGVHQRPRPDVRHAE 95
           +G+P HHPH H+ A     L G  + P P V  A+
Sbjct: 245 NGLPPHHPHAHLNAQGHGQLLGTAREPNPSVTGAQ 279

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>HNF6_HUMAN (Q9UBC0) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family|
           member 1)
          Length = 465

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +3

Query: 6   HGVPSHHPHDHVPA-----LCGVHQRPRPDVRHAE 95
           +G+P HHPH H+ A     L G  + P P V  A+
Sbjct: 245 NGLPPHHPHAHLNAQGHGQLLGTAREPNPSVTGAQ 279

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>HRPK_PSESY (P41501) Pathogenicity locus protein hrpK|
          Length = 641

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
 Frame = -1

Query: 161 VTTGAAGDLQQITGLAK-----------QMVVTFGMSDIGPWSLMDAAQSGDVIMRMMAR 15
           V    +G+L   T LAK           Q  V FG ++  P S     QSG  +M ++ R
Sbjct: 15  VNQPTSGELAAETPLAKASLTQSGAGGGQAFVQFGQANDSPSSFSGTEQSGSSLMSLLTR 74

Query: 14  NSMS 3
           +S S
Sbjct: 75  SSSS 78

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>YHCN_BACSU (P54598) Lipoprotein yhcN precursor|
          Length = 189

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 132 ADHRLSQADGGDVRHVGHRAVVSDGRRTERGRDHADD 22
           AD    + D  DVR+V +R   +D  R    RD+ D+
Sbjct: 24  ADQGEGRRDNNDVRNVNYRNPANDDMRNVNNRDNVDN 60

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>CX017_MOUSE (Q8C3F2) Protein CXorf17 homolog|
          Length = 1091

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 3   RHGVPSHHPHDHVPALCGVHQRPRP 77
           RH  P+HH H H  A  G+H  P P
Sbjct: 83  RHHHPAHHFHHHGQAPPGLHPPPPP 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,875,576
Number of Sequences: 219361
Number of extensions: 504935
Number of successful extensions: 1795
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result