| Clone Name | rbags24g01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT024135.1| Zea mays clone EL01N0328B03 mRNA sequence Length = 1500 Score = 75.8 bits (38), Expect = 1e-10 Identities = 116/142 (81%) Strand = Plus / Minus Query: 394 tttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaa 453 ||||||| ||||| |||||||||| |||||||| |||||||| || || || ||||||| Sbjct: 1204 tttagctgaccaattttcttgtcagcctctttgctggagggatatcgtcagacttcccaa 1145 Query: 454 ggaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgc 513 | ||||| |||||| ||| || ||||||| || ||| ||| |||||||||| | | Sbjct: 1144 gaaagtccgacttgccatgtccggccttcatcatgggggcagcaggcttcacagcgctcc 1085 Query: 514 gtgttcgagaggtcacagacat 535 |||||| ||||||||||||||| Sbjct: 1084 gtgttctagaggtcacagacat 1063
>gb|AY109790.1| Zea mays CL76_1 mRNA sequence Length = 1807 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 394 tttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaa 453 ||||||| ||||| ||||| |||| ||||||||||||||||| || || || ||||| | Sbjct: 513 tttagctgaccaattttctcgtcagcctctttgccggagggatatcgtcagacttcccca 572 Query: 454 ggaagtctgacttg 467 |||||||||||||| Sbjct: 573 ggaagtctgacttg 586
>ref|XM_467323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1803 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 1404 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 1345 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 1344 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 1285 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 1284 cgttcgagaggtaacagacatatgag 1259
>ref|XM_467322.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2722 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 2288 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 2229 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 2228 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 2169 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 2168 cgttcgagaggtaacagacatatgag 2143
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 28844665 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 28844606 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 28844605 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 28844546 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 28844545 cgttcgagaggtaacagacatatgag 28844520
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 161238 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 161179 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 161178 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 161119 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 161118 cgttcgagaggtaacagacatatgag 161093
>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_E07 Length = 123613 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 37357 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 37298 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 37297 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 37238 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 37237 cgttcgagaggtaacagacatatgag 37212
>dbj|AK111985.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B03, full insert sequence Length = 1407 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 1162 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 1103 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 1102 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 1043 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 1042 cgttcgagaggtaacagacatatgag 1017
>dbj|AK100966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142H24, full insert sequence Length = 1803 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 1404 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 1345 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 1344 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 1285 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 1284 cgttcgagaggtaacagacatatgag 1259
>dbj|AK100056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158B11, full insert sequence Length = 2722 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Minus Query: 395 ttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaag 454 |||||| || || ||||||||||| |||||||| ||||| ||||| || | ||| || || Sbjct: 2288 ttagcttactaattttcttgtcaacctctttgcaggaggtatttcgtctgtttttcccag 2229 Query: 455 gaagtctgacttgagatgcccagccttcaacagcgggacagggggcttcacagtcgtgcg 514 ||||| |||||| |||||||||||| | |||| ||| ||||| ||| || || Sbjct: 2228 taagtcagacttgccgagcccagccttcagtaacggggcagcaggcttgggagtagtacg 2169 Query: 515 tgttcgagaggtcacagacatatgag 540 ||||||||||| ||||||||||||| Sbjct: 2168 cgttcgagaggtaacagacatatgag 2143
>gb|AC108434.12| Mus musculus chromosome 18, clone RP23-198I24, complete sequence Length = 197080 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 355 catgcctctctgcagccgatcg 376 |||||||||||||||||||||| Sbjct: 28089 catgcctctctgcagccgatcg 28110
>gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, complete sequence Length = 202147 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 cacatgttttgttcatagaca 160 ||||||||||||||||||||| Sbjct: 43896 cacatgttttgttcatagaca 43876
>gb|AC165256.2| Mus musculus BAC clone RP23-216O10 from chromosome 9, complete sequence Length = 231728 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 catgcctctctgcagccgatc 375 ||||||||||||||||||||| Sbjct: 11746 catgcctctctgcagccgatc 11726
>gb|AC128698.4| Mus musculus BAC clone RP24-127J4 from chromosome 9, complete sequence Length = 148461 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 catgcctctctgcagccgatc 375 ||||||||||||||||||||| Sbjct: 114917 catgcctctctgcagccgatc 114897
>gb|AC124531.5| Mus musculus BAC clone RP23-299D2 from 7, complete sequence Length = 191228 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aaggaagtctgacttgagatg 472 ||||||||||||||||||||| Sbjct: 171528 aaggaagtctgacttgagatg 171548
>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence Length = 192092 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aaggaagtctgacttgagatg 472 ||||||||||||||||||||| Sbjct: 1528 aaggaagtctgacttgagatg 1548
>gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 of the complete genome Length = 324746 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 atttcccaaggaagtctgact 465 ||||||||||||||||||||| Sbjct: 118205 atttcccaaggaagtctgact 118185
>ref|XM_967585.1| PREDICTED: Tribolium castaneum similar to CG9357-PA (LOC661428), mRNA Length = 1531 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 429 ggagggatttcatcggatttc 449 ||||||||||||||||||||| Sbjct: 1178 ggagggatttcatcggatttc 1158
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 atttcccaaggaagtctgact 465 ||||||||||||||||||||| Sbjct: 1049371 atttcccaaggaagtctgact 1049391
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 atttcccaaggaagtctgact 465 ||||||||||||||||||||| Sbjct: 1022071 atttcccaaggaagtctgact 1022051
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 atttcccaaggaagtctgact 465 ||||||||||||||||||||| Sbjct: 1021392 atttcccaaggaagtctgact 1021372
>gb|AC123068.4| Mus musculus BAC clone RP23-21P10 from 1, complete sequence Length = 221464 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 agcaagcagggggaggaaac 281 |||||||||||||||||||| Sbjct: 191843 agcaagcagggggaggaaac 191862
>ref|XM_673664.1| Plasmodium berghei strain ANKA hypothetical protein (PB000644.01.0) partial mRNA Length = 7827 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tgttagattgcacatgaaca 73 |||||||||||||||||||| Sbjct: 6250 tgttagattgcacatgaaca 6231
>gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosome 9, complete sequence Length = 182831 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 aaagcaagcagggggaggaa 279 |||||||||||||||||||| Sbjct: 74354 aaagcaagcagggggaggaa 74373
>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete sequence Length = 123020 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gaaacaaccagaaggaccat 296 |||||||||||||||||||| Sbjct: 23563 gaaacaaccagaaggaccat 23582
>gb|AC154448.2| Mus musculus BAC clone RP23-185F24 from chromosome 16, complete sequence Length = 203269 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 ctttcttgtcaatctctttg 426 |||||||||||||||||||| Sbjct: 100956 ctttcttgtcaatctctttg 100937
>gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, complete sequence Length = 182530 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 agcaagcagggggaggaaac 281 |||||||||||||||||||| Sbjct: 157717 agcaagcagggggaggaaac 157698
>gb|AC154421.2| Mus musculus BAC clone RP24-217C15 from 16, complete sequence Length = 188761 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 ctttcttgtcaatctctttg 426 |||||||||||||||||||| Sbjct: 161969 ctttcttgtcaatctctttg 161950
>gb|AC154543.2| Mus musculus BAC clone RP23-228E21 from 12, complete sequence Length = 197876 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gaggtcacagacatatgagc 541 |||||||||||||||||||| Sbjct: 80465 gaggtcacagacatatgagc 80484
>emb|CT010578.16| Mouse DNA sequence from clone RP23-268O1 on chromosome 12, complete sequence Length = 180650 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gaggtcacagacatatgagc 541 |||||||||||||||||||| Sbjct: 86656 gaggtcacagacatatgagc 86675
>emb|CT030709.6| Mouse DNA sequence from clone RP23-268C22 on chromosome 9, complete sequence Length = 206089 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 aaagcaagcagggggaggaa 279 |||||||||||||||||||| Sbjct: 45865 aaagcaagcagggggaggaa 45846
>emb|AJ239059.1|TBR239059 Trypanosoma brucei mRNA for ESAG11 protein Length = 1166 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 aaactcaggacaaacaaaga 136 |||||||||||||||||||| Sbjct: 193 aaactcaggacaaacaaaga 212 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,453,003 Number of Sequences: 3902068 Number of extensions: 4453003 Number of successful extensions: 75132 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75039 Number of HSP's gapped (non-prelim): 93 length of query: 578 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 555 effective length of database: 17,143,297,704 effective search space: 9514530225720 effective search space used: 9514530225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)