ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009550.1| Triticum aestivum clone wr1.pk164.h10:fis, full i... 143 3e-31
2gb|AY618693.1| Avena strigosa strain CI3815 cycloartenol synthas... 80 4e-12
3emb|AJ311790.1|AST311790 Avena strigosa mRNA for cycloartenol sy... 80 4e-12
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 80 4e-12
5dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 80 4e-12
6dbj|AK103080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 4e-12
7gb|BT018875.1| Zea mays clone EL01N0563E07.d mRNA sequence 74 3e-10
8gb|AY108167.1| Zea mays PCO144257 mRNA sequence 74 3e-10
9gb|AY618694.1| Avena ventricosa strain CAV2835 cycloartenol synt... 72 1e-09
10gb|AY618692.1| Avena prostrata strain CC7060 cycloartenol syntha... 72 1e-09
11gb|AY618691.1| Avena longiglumis strain CC7250 cycloartenol synt... 72 1e-09
12gb|AY618690.1| Avena longiglumis strain CC4719 cycloartenol synt... 72 1e-09
13gb|AY618689.1| Avena clauda strain CAV5566/1 cycloartenol syntha... 72 1e-09
14gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
16dbj|AK068026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
17dbj|AK066327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
19gb|AY109591.1| Zea mays CL201_1 mRNA sequence 60 4e-06
20ref|XM_531506.1| PREDICTED: Pan troglodytes LOC474058 (LOC474058... 48 0.014
21gb|BC035638.1| Homo sapiens lanosterol synthase (2,3-oxidosquale... 48 0.014
22ref|NM_001001438.1| Homo sapiens lanosterol synthase (2,3-oxidos... 48 0.014
23ref|NM_002340.3| Homo sapiens lanosterol synthase (2,3-oxidosqua... 48 0.014
24dbj|AK096769.1| Homo sapiens cDNA FLJ39450 fis, clone PROST2008770 48 0.014
25dbj|AK092334.1| Homo sapiens cDNA FLJ35015 fis, clone OCBBF2014229 48 0.014
26dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, ... 48 0.014
27dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, ... 48 0.014
28emb|AJ239031.1|HSA239031 Homo sapiens LSS gene, partial, exons 2... 48 0.014
29dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 48 0.014
30gb|U22526.1|HSU22526 Human 2,3-oxidosqualene-lanosterol cyclase ... 48 0.014
31dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 48 0.014
32dbj|D63807.1|HUMLASY Human mRNA for lanosterol synthase, complet... 48 0.014
33ref|XM_464088.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.88
34gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, comp... 42 0.88
35dbj|AK121211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.88
36gb|AF169966.1|AF169966 Oryza sativa putative cycloartenol syntha... 42 0.88
37gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosom... 40 3.5
38gb|AC134392.5| Mus musculus chromosome 16, clone RP24-346N12, co... 40 3.5
39gb|S81221.1| lanosterol synthase [human, fetal liver, mRNA Parti... 40 3.5
40gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome ... 40 3.5
41gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 3.5
42emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 40 3.5
43emb|AL928952.15| Zebrafish DNA sequence from clone CH211-225G23,... 40 3.5 
>gb|BT009550.1| Triticum aestivum clone wr1.pk164.h10:fis, full insert mRNA sequence
          Length = 1300

 Score =  143 bits (72), Expect = 3e-31
 Identities = 162/191 (84%), Gaps = 4/191 (2%)
 Strand = Plus / Minus

                                                                        
Query: 79   tctatacggctaccagatctccacctgcatctagctacattattgcaaacatacactgtt 138
            ||||||||||||||||||||||||||||| ||||| |||||||| || | | ||||||||
Sbjct: 1136 tctatacggctaccagatctccacctgcacctagcaacattattacagaaacacactgtt 1077

                                                                        
Query: 139  ccagcacgtaaaccgcaagccaaaaaagaaggaacatggtactatttcttgcccaccccc 198
            ||||||||||| |||   ||| ||| |||||||| | ||||||| |||||| || | |||
Sbjct: 1076 ccagcacgtaacccg---gcc-aaagagaaggaagacggtactacttcttggccgcgccc 1021

                                                                        
Query: 199  aagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactgggaa 258
            |  || |||||||||||||   | ||||||||||| |||||||||||||  |||||||| 
Sbjct: 1020 agcacccggcagcggtactcgccaagcgcccagatagggaagatgttccgatactgggag 961

                       
Query: 259  tagctgatcat 269
            |||||||||||
Sbjct: 960  tagctgatcat 950
to top
>gb|AY618693.1| Avena strigosa strain CI3815 cycloartenol synthase gene, complete cds
          Length = 2280

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 197  ccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggg 256
            ||||||||||||| ||||||| | |||| |||||||  |||||||||| |||||||||||
Sbjct: 2266 ccaagactcggcaacggtactctccgagtgcccagacagggaagatgtccctgtactggg 2207

                         
Query: 257  aatagctgatcat 269
            | || ||||||||
Sbjct: 2206 agtaactgatcat 2194
to top
>emb|AJ311790.1|AST311790 Avena strigosa mRNA for cycloartenol synthase (cs1 gene)
          Length = 2280

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 197  ccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggg 256
            ||||||||||||| ||||||| | |||| |||||||  |||||||||| |||||||||||
Sbjct: 2266 ccaagactcggcaacggtactctccgagtgcccagacagggaagatgtccctgtactggg 2207

                         
Query: 257  aatagctgatcat 269
            | || ||||||||
Sbjct: 2206 agtaactgatcat 2194
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                           
Query: 198     caagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggga 257
               |||||||||||||||||||| | |||| ||||| || ||||| |||||||||||||| ||
Sbjct: 2111140 caagactcggcagcggtactctccgagagcccaaatagggaatatgttcctgtactgaga 2111199

                        
Query: 258     atagctgat 266
                ||||||||
Sbjct: 2111200 gtagctgat 2111208



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 226     gcccagatngggaagatgttcctgtactgggaatagctgatcat 269
               ||||| || ||||||||||| || |||| ||| |||||||||||
Sbjct: 2128703 gcccaaatagggaagatgtttctatactcggagtagctgatcat 2128746
to top
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1679_B08
          Length = 142529

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                         
Query: 198   caagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggga 257
             |||||||||||||||||||| | |||| ||||| || ||||| |||||||||||||| ||
Sbjct: 25833 caagactcggcagcggtactctccgagagcccaaatagggaatatgttcctgtactgaga 25892

                      
Query: 258   atagctgat 266
              ||||||||
Sbjct: 25893 gtagctgat 25901



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 226   gcccagatngggaagatgttcctgtactgggaatagctgatcat 269
             ||||| || ||||||||||| || |||| ||| |||||||||||
Sbjct: 43396 gcccaaatagggaagatgtttctatactcggagtagctgatcat 43439
to top
>dbj|AK103080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118E24, full
            insert sequence
          Length = 2458

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  caagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggga 257
            |||||||||||||||||||| | |||| ||||| || ||||| |||||||||||||| ||
Sbjct: 2282 caagactcggcagcggtactctccgagagcccaaatagggaatatgttcctgtactgaga 2223

                     
Query: 258  atagctgat 266
             ||||||||
Sbjct: 2222 gtagctgat 2214
to top
>gb|BT018875.1| Zea mays clone EL01N0563E07.d mRNA sequence
          Length = 1716

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 196  cccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactgg 255
            |||| ||||||||| ||||||| | | || |||||||| |||||| ||||||||||||||
Sbjct: 1538 cccaggactcggcaccggtactctcccagagcccagatcgggaaggtgttcctgtactgg 1479

                          
Query: 256  gaatagctgatcat 269
            || || ||||||||
Sbjct: 1478 gagtaactgatcat 1465
to top
>gb|AY108167.1| Zea mays PCO144257 mRNA sequence
          Length = 764

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 196 cccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactgg 255
           |||| ||||||||| ||||||| | | || |||||||| |||||| ||||||||||||||
Sbjct: 453 cccaggactcggcaccggtactctcccagagcccagatcgggaaggtgttcctgtactgg 394

                         
Query: 256 gaatagctgatcat 269
           || || ||||||||
Sbjct: 393 gagtaactgatcat 380
to top
>gb|AY618694.1| Avena ventricosa strain CAV2835 cycloartenol synthase gene, complete
            cds
          Length = 2280

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggg 256
            ||||||||||||| ||||||| | |||| ||||| |  |||||||||| |||||||||||
Sbjct: 2266 ccaagactcggcaacggtactctccgagtgcccacacagggaagatgtccctgtactggg 2207

                         
Query: 257  aatagctgatcat 269
            | || ||||||||
Sbjct: 2206 agtaactgatcat 2194
to top
>gb|AY618692.1| Avena prostrata strain CC7060 cycloartenol synthase gene, complete
            cds
          Length = 2280

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggg 256
            ||||||||||||| ||||||| | |||| |||||||  ||||| |||| |||||||||||
Sbjct: 2266 ccaagactcggcaacggtactctccgagtgcccagacagggaatatgtccctgtactggg 2207

                         
Query: 257  aatagctgatcat 269
            | || ||||||||
Sbjct: 2206 agtaactgatcat 2194
to top
>gb|AY618691.1| Avena longiglumis strain CC7250 cycloartenol synthase gene, complete
            cds
          Length = 2280

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggg 256
            ||||||||||||| ||||||| | |||| ||||| |  |||||||||| |||||||||||
Sbjct: 2266 ccaagactcggcaacggtactctccgagtgcccacacagggaagatgtccctgtactggg 2207

                         
Query: 257  aatagctgatcat 269
            | || ||||||||
Sbjct: 2206 agtaactgatcat 2194
to top
>gb|AY618690.1| Avena longiglumis strain CC4719 cycloartenol synthase gene, complete
            cds
          Length = 2280

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggg 256
            ||||||||||||| ||||||| | |||| ||||| |  |||||||||| |||||||||||
Sbjct: 2266 ccaagactcggcaacggtactctccgagtgcccacacagggaagatgtccctgtactggg 2207

                         
Query: 257  aatagctgatcat 269
            | || ||||||||
Sbjct: 2206 agtaactgatcat 2194
to top
>gb|AY618689.1| Avena clauda strain CAV5566/1 cycloartenol synthase gene, complete
            cds
          Length = 2280

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ccaagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactggg 256
            ||||||||||||| ||||||| | |||| ||||| |  |||||||||| |||||||||||
Sbjct: 2266 ccaagactcggcaacggtactctccgagtgcccacacagggaagatgtccctgtactggg 2207

                         
Query: 257  aatagctgatcat 269
            | || ||||||||
Sbjct: 2206 agtaactgatcat 2194
to top
>gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040G18,
              complete sequence
          Length = 172281

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 235    gggaagatgttcctgtactgggaatagctgatcat 269
              |||||||||||||||||||||||||| ||||||||
Sbjct: 125076 gggaagatgttcctgtactgggaataactgatcat 125110
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                  
Query: 235     gggaagatgttcctgtactgggaatagctgatcat 269
               |||||||||||||||||||||||||| ||||||||
Sbjct: 4527326 gggaagatgttcctgtactgggaataactgatcat 4527292
to top
>dbj|AK068026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131K12, full
            insert sequence
          Length = 2558

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 235  gggaagatgttcctgtactgggaatagctgatcat 269
            |||||||||||||||||||||||||| ||||||||
Sbjct: 2272 gggaagatgttcctgtactgggaataactgatcat 2238
to top
>dbj|AK066327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062J12, full
            insert sequence
          Length = 2578

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 235  gggaagatgttcctgtactgggaatagctgatcat 269
            |||||||||||||||||||||||||| ||||||||
Sbjct: 2327 gggaagatgttcctgtactgggaataactgatcat 2293
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                  
Query: 235     gggaagatgttcctgtactgggaatagctgatcat 269
               |||||||||||||||||||||||||| ||||||||
Sbjct: 4546717 gggaagatgttcctgtactgggaataactgatcat 4546683
to top
>gb|AY109591.1| Zea mays CL201_1 mRNA sequence
          Length = 2920

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 199  aagactcggcagcggtactntncgagcgcccagatngggaagatgttcctgtactgggaa 258
            |||||||| || |||||||   | || ||||| || ||||||||||||||||||||||| 
Sbjct: 2499 aagactcgacaccggtactcacccagagcccaaatcgggaagatgttcctgtactgggag 2440

                       
Query: 259  tagctgatcat 269
            ||||| |||||
Sbjct: 2439 tagcttatcat 2429
to top
>ref|XM_531506.1| PREDICTED: Pan troglodytes LOC474058 (LOC474058), mRNA
          Length = 3778

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 3728 cgagggcccagatggggaagatgttcctgta 3698
to top
>gb|BC035638.1| Homo sapiens lanosterol synthase (2,3-oxidosqualene-lanosterol
            cyclase), transcript variant 1, mRNA (cDNA clone
            MGC:46212 IMAGE:5547173), complete cds
          Length = 4236

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 2191 cgagggcccagatggggaagatgttcctgta 2161
to top
>ref|NM_001001438.1| Homo sapiens lanosterol synthase (2,3-oxidosqualene-lanosterol
            cyclase) (LSS), transcript variant 2, mRNA
          Length = 2658

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 2181 cgagggcccagatggggaagatgttcctgta 2151
to top
>ref|NM_002340.3| Homo sapiens lanosterol synthase (2,3-oxidosqualene-lanosterol
            cyclase) (LSS), transcript variant 1, mRNA
          Length = 4225

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 2181 cgagggcccagatggggaagatgttcctgta 2151
to top
>dbj|AK096769.1| Homo sapiens cDNA FLJ39450 fis, clone PROST2008770
          Length = 2414

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 1965 cgagggcccagatggggaagatgttcctgta 1935
to top
>dbj|AK092334.1| Homo sapiens cDNA FLJ35015 fis, clone OCBBF2014229
          Length = 3600

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 1578 cgagggcccagatggggaagatgttcctgta 1548
to top
>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete
             sequences
          Length = 224098

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 221   cgagcgcccagatngggaagatgttcctgta 251
             |||| |||||||| |||||||||||||||||
Sbjct: 47810 cgagggcccagatggggaagatgttcctgta 47840
to top
>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete
             sequences
          Length = 102671

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 221   cgagcgcccagatngggaagatgttcctgta 251
             |||| |||||||| |||||||||||||||||
Sbjct: 84681 cgagggcccagatggggaagatgttcctgta 84711
to top
>emb|AJ239031.1|HSA239031 Homo sapiens LSS gene, partial, exons 22, 23 and joined CDS
          Length = 1900

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 221 cgagcgcccagatngggaagatgttcctgta 251
           |||| |||||||| |||||||||||||||||
Sbjct: 994 cgagggcccagatggggaagatgttcctgta 964
to top
>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105
          Length = 340000

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 221    cgagcgcccagatngggaagatgttcctgta 251
              |||| |||||||| |||||||||||||||||
Sbjct: 208882 cgagggcccagatggggaagatgttcctgta 208912
to top
>gb|U22526.1|HSU22526 Human 2,3-oxidosqualene-lanosterol cyclase mRNA, complete cds
          Length = 3206

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 2300 cgagggcccagatggggaagatgttcctgta 2270
to top
>dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:21B35B20, telomere
             region, complete sequence
          Length = 67332

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 221   cgagcgcccagatngggaagatgttcctgta 251
             |||| |||||||| |||||||||||||||||
Sbjct: 36685 cgagggcccagatggggaagatgttcctgta 36715
to top
>dbj|D63807.1|HUMLASY Human mRNA for lanosterol synthase, complete cds
          Length = 2631

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| |||||||||||||||||
Sbjct: 2167 cgagggcccagatggggaagatgttcctgta 2137
to top
>ref|XM_464088.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2651

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 226  gcccagatngggaagatgttcctgtactgggaatagctgatcat 269
            ||||| || ||||||||||| || |||| ||| |||||||||||
Sbjct: 2376 gcccaaatagggaagatgtttctatactcggagtagctgatcat 2333
to top
>gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, complete sequence
          Length = 200074

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    ctacattattgcaaacataca 133
              |||||||||||||||||||||
Sbjct: 118774 ctacattattgcaaacataca 118794
to top
>dbj|AK121211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089G09, full
            insert sequence
          Length = 2651

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 226  gcccagatngggaagatgttcctgtactgggaatagctgatcat 269
            ||||| || ||||||||||| || |||| ||| |||||||||||
Sbjct: 2376 gcccaaatagggaagatgtttctatactcggagtagctgatcat 2333
to top
>gb|AF169966.1|AF169966 Oryza sativa putative cycloartenol synthase (CAS1) mRNA, partial cds
          Length = 2413

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 226  gcccagatngggaagatgttcctgtactgggaatagctgatcat 269
            ||||| || ||||||||||| || |||| ||| |||||||||||
Sbjct: 2232 gcccaaatagggaagatgtttctatactcggagtagctgatcat 2189
to top
>gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosome 6, complete sequence
          Length = 186704

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    aaaaaagaaggaacatggta 179
              ||||||||||||||||||||
Sbjct: 181615 aaaaaagaaggaacatggta 181634
to top
>gb|AC134392.5| Mus musculus chromosome 16, clone RP24-346N12, complete sequence
          Length = 170666

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ccacctgcatctagctacat 118
             ||||||||||||||||||||
Sbjct: 83034 ccacctgcatctagctacat 83053
to top
>gb|S81221.1| lanosterol synthase [human, fetal liver, mRNA Partial, 2637 nt]
          Length = 2637

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 221  cgagcgcccagatngggaagatgttcctgta 251
            |||| |||||||| || ||||||||||||||
Sbjct: 2167 cgagggcccagatgggaaagatgttcctgta 2137
to top
>gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome 6, complete sequence
          Length = 203187

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   aaaaaagaaggaacatggta 179
             ||||||||||||||||||||
Sbjct: 42326 aaaaaagaaggaacatggta 42345
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 76      tattctatacggctaccaga 95
               ||||||||||||||||||||
Sbjct: 3652226 tattctatacggctaccaga 3652207
to top
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    aaaaaagaaggaacatggta 179
              ||||||||||||||||||||
Sbjct: 223715 aaaaaagaaggaacatggta 223696
to top
>emb|AL928952.15| Zebrafish DNA sequence from clone CH211-225G23, complete sequence
          Length = 182212

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 113    ctacattattgcaaacatacactg 136
              ||||||||||||||| ||||||||
Sbjct: 173613 ctacattattgcaaaaatacactg 173636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,036,165
Number of Sequences: 3902068
Number of extensions: 2036165
Number of successful extensions: 31164
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31065
Number of HSP's gapped (non-prelim): 98
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top