ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24f07 |
|---|---|
| Clone Library Name | barley_pub |
>RL9_ORYSA (P49210) 60S ribosomal protein L9| Length = 190 Score = 150 bits (379), Expect(2) = 6e-49 Identities = 75/83 (90%), Positives = 79/83 (95%) Frame = -1 Query: 375 ANRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHV 196 +N IEIRNFLGEKKVRKVDML+GVTILRSEKVKDE+VLDGNDIELVSRSAALINQKCHV Sbjct: 107 SNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHV 166 Query: 195 KNKDIRKFLDGIYVSDKGAIKEE 127 KNKDIRKFLDGIYVSDKG I E+ Sbjct: 167 KNKDIRKFLDGIYVSDKGTITED 189 Score = 62.8 bits (151), Expect(2) = 6e-49 Identities = 29/31 (93%), Positives = 30/31 (96%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASITAS 374 QNLITGVTKG+RYKMRFVYAHFPINASIT S Sbjct: 77 QNLITGVTKGYRYKMRFVYAHFPINASITNS 107
>RL9_PEA (P30707) 60S ribosomal protein L9 (Gibberellin-regulated protein| GA) Length = 193 Score = 143 bits (361), Expect(2) = 1e-45 Identities = 70/82 (85%), Positives = 77/82 (93%) Frame = -1 Query: 372 NRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVK 193 N+ IEIRNFLGEKKVRKVD+LDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK Sbjct: 111 NKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVK 170 Query: 192 NKDIRKFLDGIYVSDKGAIKEE 127 KDIRKFLDGIYVS+KGA+ E Sbjct: 171 KKDIRKFLDGIYVSEKGAVVVE 192 Score = 58.5 bits (140), Expect(2) = 1e-45 Identities = 27/29 (93%), Positives = 28/29 (96%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASIT 380 +NLITGVTKGFRYKMRFVYA FPINASIT Sbjct: 80 ENLITGVTKGFRYKMRFVYADFPINASIT 108
>RL9_ARATH (P49209) 60S ribosomal protein L9| Length = 194 Score = 141 bits (355), Expect(2) = 3e-44 Identities = 71/81 (87%), Positives = 75/81 (92%) Frame = -1 Query: 369 RGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKN 190 + IEIRNFLGEKKVRKV+MLDGVTI+RSEKVKDEIVLDGNDIELVSRS ALINQKCHVK Sbjct: 113 KSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKK 172 Query: 189 KDIRKFLDGIYVSDKGAIKEE 127 KDIRKFLDGIYVS+K I EE Sbjct: 173 KDIRKFLDGIYVSEKSKIVEE 193 Score = 56.6 bits (135), Expect(2) = 3e-44 Identities = 25/27 (92%), Positives = 27/27 (100%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASI 383 NLI+GVT+GFRYKMRFVYAHFPINASI Sbjct: 82 NLISGVTRGFRYKMRFVYAHFPINASI 108
>RL9A_YEAST (P05738) 60S ribosomal protein L9-A (L8) (YL11) (RP25)| Length = 191 Score = 102 bits (254), Expect(2) = 2e-31 Identities = 52/79 (65%), Positives = 62/79 (78%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 IE+RNFLG+KK+R V + DGVTI S VKDEIVL GN +E VS++AA + Q C V+NKD Sbjct: 112 IEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKD 171 Query: 183 IRKFLDGIYVSDKGAIKEE 127 IRKFLDGIYVS KG I E+ Sbjct: 172 IRKFLDGIYVSHKGFITED 190 Score = 52.4 bits (124), Expect(2) = 2e-31 Identities = 21/27 (77%), Positives = 26/27 (96%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASI 383 N+ITGVTKG++YKMR+VYAHFPIN +I Sbjct: 77 NMITGVTKGYKYKMRYVYAHFPINVNI 103
>RL9B_YEAST (P51401) 60S ribosomal protein L9-B (L8) (YL11) (RP25)| Length = 191 Score = 102 bits (253), Expect(2) = 2e-31 Identities = 52/79 (65%), Positives = 62/79 (78%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 IE+RNFLG+KK+R V + DGVTI S VKDEIVL GN +E VS++AA + Q C V+NKD Sbjct: 112 IEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKD 171 Query: 183 IRKFLDGIYVSDKGAIKEE 127 IRKFLDGIYVS KG I E+ Sbjct: 172 IRKFLDGIYVSHKGFIVED 190 Score = 52.4 bits (124), Expect(2) = 2e-31 Identities = 21/27 (77%), Positives = 26/27 (96%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASI 383 N+ITGVTKG++YKMR+VYAHFPIN +I Sbjct: 77 NMITGVTKGYKYKMRYVYAHFPINVNI 103
>RL9_RAT (P17077) 60S ribosomal protein L9| Length = 192 Score = 102 bits (255), Expect(2) = 2e-30 Identities = 51/78 (65%), Positives = 62/78 (79%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGEK +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKD Sbjct: 112 VEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKD 171 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS+KG +++ Sbjct: 172 IRKFLDGIYVSEKGTVQQ 189 Score = 48.5 bits (114), Expect(2) = 2e-30 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 QN+I GVT GFRYKMR VYAHFPIN I Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVI 105
>RL9_MOUSE (P51410) 60S ribosomal protein L9| Length = 192 Score = 102 bits (255), Expect(2) = 2e-30 Identities = 51/78 (65%), Positives = 62/78 (79%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGEK +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKD Sbjct: 112 VEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKD 171 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS+KG +++ Sbjct: 172 IRKFLDGIYVSEKGTVQQ 189 Score = 48.5 bits (114), Expect(2) = 2e-30 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 QN+I GVT GFRYKMR VYAHFPIN I Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVI 105
>RL9_MACFA (Q5IFJ7) 60S ribosomal protein L9| Length = 192 Score = 102 bits (255), Expect(2) = 2e-30 Identities = 51/78 (65%), Positives = 62/78 (79%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGEK +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKD Sbjct: 112 VEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKD 171 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS+KG +++ Sbjct: 172 IRKFLDGIYVSEKGTVQQ 189 Score = 48.5 bits (114), Expect(2) = 2e-30 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 QN+I GVT GFRYKMR VYAHFPIN I Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVI 105
>RL9_ICTPU (Q90YW0) 60S ribosomal protein L9| Length = 192 Score = 102 bits (255), Expect(2) = 2e-30 Identities = 53/78 (67%), Positives = 60/78 (76%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGEK +R+V M GV S KDE+VL+GNDIELVS SAALI Q VKNKD Sbjct: 112 VEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKD 171 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS+KG + E Sbjct: 172 IRKFLDGIYVSEKGTVVE 189 Score = 48.5 bits (114), Expect(2) = 2e-30 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 QN+I GVT GFRYKMR VYAHFPIN I Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVI 105
>RL9_HUMAN (P32969) 60S ribosomal protein L9| Length = 192 Score = 102 bits (255), Expect(2) = 2e-30 Identities = 51/78 (65%), Positives = 62/78 (79%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGEK +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKD Sbjct: 112 VEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKD 171 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS+KG +++ Sbjct: 172 IRKFLDGIYVSEKGTVQQ 189 Score = 48.5 bits (114), Expect(2) = 2e-30 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 QN+I GVT GFRYKMR VYAHFPIN I Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVI 105
>RL9_BOVIN (Q3SYR7) 60S ribosomal protein L9| Length = 192 Score = 102 bits (255), Expect(2) = 2e-30 Identities = 51/78 (65%), Positives = 62/78 (79%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGEK +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKD Sbjct: 112 VEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKD 171 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS+KG +++ Sbjct: 172 IRKFLDGIYVSEKGTVQQ 189 Score = 48.5 bits (114), Expect(2) = 2e-30 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 QN+I GVT GFRYKMR VYAHFPIN I Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVI 105
>RL9_SPOFR (Q963B7) 60S ribosomal protein L9| Length = 190 Score = 100 bits (250), Expect(2) = 8e-30 Identities = 49/82 (59%), Positives = 63/82 (76%) Frame = -1 Query: 378 QANRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCH 199 + N IEIRNFLGEK +R+V M GVT++ S K KDE++++GN +E VS SAALI Q Sbjct: 105 EGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 164 Query: 198 VKNKDIRKFLDGIYVSDKGAIK 133 VKNKDIRKFLDG+YVS+K ++ Sbjct: 165 VKNKDIRKFLDGLYVSEKTTVE 186 Score = 48.5 bits (114), Expect(2) = 8e-30 Identities = 21/29 (72%), Positives = 24/29 (82%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASIT 380 +N+I GVTKGF+YKMR VYAHFPIN T Sbjct: 76 ENMIKGVTKGFQYKMRSVYAHFPINCVTT 104
>RL9A_SCHPO (Q10232) 60S ribosomal protein L9-A| Length = 190 Score = 99.0 bits (245), Expect(2) = 8e-30 Identities = 49/78 (62%), Positives = 62/78 (79%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGE+ R + L GVT+ S VKDEI+L+GN +E VS+SAA I Q C+V+NKD Sbjct: 110 VEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKD 169 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS++G I+E Sbjct: 170 IRKFLDGIYVSERGNIEE 187 Score = 50.4 bits (119), Expect(2) = 8e-30 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASIT 380 N+I GVT+GFRYKMR VYAHFPIN ++T Sbjct: 77 NMIIGVTQGFRYKMRLVYAHFPININLT 104
>RL9B_SCHPO (O74905) 60S ribosomal protein L9-B| Length = 189 Score = 98.2 bits (243), Expect(2) = 1e-29 Identities = 48/78 (61%), Positives = 62/78 (79%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 +EIRNFLGE+ R + L GVT+ S VKDEI+++GN +E VS+SAA I Q C+V+NKD Sbjct: 110 VEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKD 169 Query: 183 IRKFLDGIYVSDKGAIKE 130 IRKFLDGIYVS++G I+E Sbjct: 170 IRKFLDGIYVSERGNIEE 187 Score = 50.4 bits (119), Expect(2) = 1e-29 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASIT 380 N+I GVT+GFRYKMR VYAHFPIN ++T Sbjct: 77 NMIIGVTQGFRYKMRLVYAHFPININLT 104
>RL9_DROME (P50882) 60S ribosomal protein L9| Length = 190 Score = 101 bits (252), Expect(2) = 6e-29 Identities = 50/79 (63%), Positives = 62/79 (78%) Frame = -1 Query: 372 NRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVK 193 N IEIRNFLGEK +R+V+M GVT++ S KDE++++GNDIE VS SAALI Q VK Sbjct: 107 NTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVK 166 Query: 192 NKDIRKFLDGIYVSDKGAI 136 NKDIRKFLDG+YVS+K + Sbjct: 167 NKDIRKFLDGLYVSEKTTV 185 Score = 44.7 bits (104), Expect(2) = 6e-29 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPIN 392 +N+I GVT GF+YKMR VYAHFPIN Sbjct: 76 ENMIKGVTFGFQYKMRAVYAHFPIN 100
>RL9_CAEEL (Q95Y90) 60S ribosomal protein L9| Length = 189 Score = 93.2 bits (230), Expect(2) = 3e-27 Identities = 48/79 (60%), Positives = 59/79 (74%) Frame = -1 Query: 372 NRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVK 193 NR +EIRNFLGEK VR+V + +GV S KDEIV++GND++ VS++AA I Q VK Sbjct: 107 NRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVK 166 Query: 192 NKDIRKFLDGIYVSDKGAI 136 KDIRKFLDGIYVS+K I Sbjct: 167 EKDIRKFLDGIYVSEKTTI 185 Score = 47.4 bits (111), Expect(2) = 3e-27 Identities = 20/28 (71%), Positives = 24/28 (85%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 +N+I GVT GFRYKMR VYAHFPIN ++ Sbjct: 76 KNMIKGVTVGFRYKMRSVYAHFPINVTL 103
>RL6_AERPE (Q9YF91) 50S ribosomal protein L6P| Length = 182 Score = 56.2 bits (134), Expect(2) = 2e-14 Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Frame = -1 Query: 357 IRNFLGEKKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDI 181 I NFLGEK +R ++ GV + +VK +++++G D+E V+++AA I VK+KD Sbjct: 111 ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDR 166 Query: 180 RKFLDGIYVSDKGAI 136 RKF+DGIY+ ++ I Sbjct: 167 RKFMDGIYIYEREVI 181 Score = 41.2 bits (95), Expect(2) = 2e-14 Identities = 15/28 (53%), Positives = 22/28 (78%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 +N+I GV GFRYK++ +Y+HFPIN + Sbjct: 77 RNMIKGVQGGFRYKLKIMYSHFPINVKV 104
>RL6_METJA (P54042) 50S ribosomal protein L6P| Length = 182 Score = 55.5 bits (132), Expect(2) = 6e-14 Identities = 29/71 (40%), Positives = 45/71 (63%) Frame = -1 Query: 357 IRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIR 178 I NFLGEK R+ +++GVT+ S +++++ G D E V ++AA I Q +K +D R Sbjct: 110 IENFLGEKHPRRARIMEGVTVKIS---GEDVIVTGIDKEKVGQTAANIEQATRIKGRDPR 166 Query: 177 KFLDGIYVSDK 145 F DGIY+ +K Sbjct: 167 VFQDGIYIVEK 177 Score = 40.4 bits (93), Expect(2) = 6e-14 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASITASQ 371 N+I GVT+GF YK++ YAHFP+ S+ ++ Sbjct: 77 NMIKGVTEGFTYKLKIRYAHFPMKVSVKGNE 107
>RL6_METVA (P14030) 50S ribosomal protein L6P| Length = 182 Score = 55.1 bits (131), Expect(2) = 1e-12 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = -1 Query: 357 IRNFLGEKKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDI 181 I NFLGEK R +++GVT+ KV +E+++ G + E V ++AA I Q VK +D Sbjct: 110 IDNFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDT 165 Query: 180 RKFLDGIYVSDK 145 R F DGIY+ +K Sbjct: 166 RIFQDGIYIVEK 177 Score = 36.2 bits (82), Expect(2) = 1e-12 Identities = 14/27 (51%), Positives = 20/27 (74%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINAS 386 QN+I GV++GF YK+ YAHFP+ + Sbjct: 76 QNMIKGVSEGFEYKLVIRYAHFPMKVT 102
>RL6_SULSO (Q9UX91) 50S ribosomal protein L6P| Length = 181 Score = 48.5 bits (114), Expect(2) = 2e-12 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNK 187 ++I N +GEK R+ +L+GV + VK ++IV++G ++E V+++AA I + Sbjct: 108 VQITNLIGEKNTRRAQILEGVKV----TVKGEDIVVEGPNLEAVAQTAANIESASKISGF 163 Query: 186 DIRKFLDGIYVSDKGAIK 133 D R F DGI++ K I+ Sbjct: 164 DRRIFSDGIFIYKKEVIE 181 Score = 42.4 bits (98), Expect(2) = 2e-12 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASITASQ 371 +N+ITGVTKG+RY ++ +Y HFP + + ++ Sbjct: 76 KNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE 107
>RL6_METTH (O26127) 50S ribosomal protein L6P| Length = 177 Score = 46.2 bits (108), Expect(2) = 4e-11 Identities = 17/31 (54%), Positives = 25/31 (80%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASITASQ 371 N+ITGVT+GFRY+M+ VYAHFP++ + + Sbjct: 76 NMITGVTEGFRYRMKIVYAHFPMSVKVAGDK 106 Score = 40.0 bits (92), Expect(2) = 4e-11 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNK 187 + I NFLGE+ R + + +VK DE+ + G + E V ++ A I Q +K + Sbjct: 107 VVIENFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGR 162 Query: 186 DIRKFLDGIYVSDK 145 D R F DGIY+ K Sbjct: 163 DPRVFQDGIYLVSK 176
>RL6_SULAC (O05637) 50S ribosomal protein L6P| Length = 189 Score = 49.3 bits (116), Expect(2) = 2e-10 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDE-IVLDGNDIELVSRSAALINQKCHVKNK 187 +++ N +GEK +R+ +L GV + VK E IV++G+DI V+++AA I + Sbjct: 111 VQVSNLIGEKNIRRAKILPGVKVT----VKGEDIVVEGSDIYNVAQTAANIESSTKIVGY 166 Query: 186 DIRKFLDGIYVSDKGAI 136 D R F DGIY+ K I Sbjct: 167 DRRIFSDGIYIYKKEVI 183 Score = 34.7 bits (78), Expect(2) = 2e-10 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASITASQ 371 +N+ITG G+RY ++ + HFPI+ ++ + Sbjct: 79 KNMITGTINGYRYYLKVISTHFPISVKVSGDE 110
>RL6_HALMA (P14135) 50S ribosomal protein L6P (Hmal6) (Hl10)| Length = 177 Score = 50.4 bits (119), Expect(2) = 2e-10 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 + I NFLGEK R+ + + E +E+ + G DIE V ++AA I Q + +KD Sbjct: 102 VVIENFLGEKAPRRTTIHGDTDV---EIDGEELTVSGPDIEAVGQTAADIEQLTRINDKD 158 Query: 183 IRKFLDGIYVSDK 145 +R F DG+Y++ K Sbjct: 159 VRVFQDGVYITRK 171 Score = 33.1 bits (74), Expect(2) = 2e-10 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASITASQ 371 +N+ GVT+G+ Y M Y+HFP+ ++ + Sbjct: 70 ENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDE 101
>RL6_HALSA (Q9HPB8) 50S ribosomal protein L6P (HL10)| Length = 177 Score = 51.2 bits (121), Expect(2) = 5e-10 Identities = 28/75 (37%), Positives = 43/75 (57%) Frame = -1 Query: 363 IEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKD 184 + I+NFLGEK R+ + ++ + +E+ L G IE V ++AA I Q V +KD Sbjct: 102 VVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKD 158 Query: 183 IRKFLDGIYVSDKGA 139 R F DG+Y+ +K A Sbjct: 159 TRVFQDGVYIVEKPA 173 Score = 31.2 bits (69), Expect(2) = 5e-10 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASITASQ 371 N+ GV++G+ YK+ Y+HFP+ + + Sbjct: 71 NMFHGVSEGWEYKLEVHYSHFPMQVDVEGEE 101
>RL9_HAECO (O02376) 60S ribosomal protein L9 (Fragment)| Length = 141 Score = 51.6 bits (122), Expect(2) = 3e-09 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASI 383 QN+I GVTKGFRYKMR VYAHFPIN ++ Sbjct: 76 QNMIKGVTKGFRYKMRSVYAHFPINVTL 103 Score = 28.5 bits (62), Expect(2) = 3e-09 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -1 Query: 369 RGIEIRNFLGEKKVRKVDM 313 R +EIRNFLGEK VR V + Sbjct: 108 RTVEIRNFLGEKIVRPVPL 126
>RL6_PYRAB (Q9V1V1) 50S ribosomal protein L6P| Length = 184 Score = 55.1 bits (131), Expect = 9e-08 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = -1 Query: 357 IRNFLGEKKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDI 181 I NFLGEK R+ +L GVT+ KVK EI+++G D E V ++AA I Q + D Sbjct: 110 IENFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDR 165 Query: 180 RKFLDGIYVSDK 145 R F DGIY+ +K Sbjct: 166 RVFQDGIYIVEK 177 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASITASQ---PRHRDQELPRRKK 332 N+I GVT+GF YK++ VY+HFPI + + ++ PRR K Sbjct: 77 NMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAK 123
>RL6_PYRHO (O59433) 50S ribosomal protein L6P| Length = 184 Score = 53.5 bits (127), Expect = 3e-07 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = -1 Query: 357 IRNFLGEKKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDI 181 I NFLGEK R+ +L GVT+ KVK EI+++G D E ++AA I Q + D Sbjct: 110 IENFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDR 165 Query: 180 RKFLDGIYVSDK 145 R F DGIY+ +K Sbjct: 166 RVFQDGIYIVEK 177 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%) Frame = -3 Query: 463 NLITGVTKGFRYKMRFVYAHFPINASITASQ---PRHRDQELPRRKK 332 N+I GVT+GF YK++ VY+HFPI + + ++ PRR K Sbjct: 77 NMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAK 123
>RL6_ARCFU (O28370) 50S ribosomal protein L6P| Length = 196 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/71 (36%), Positives = 38/71 (53%) Frame = -1 Query: 357 IRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIR 178 I NF+GEK R+ ++ + E +I + G DIE ++AA + Q +K KD R Sbjct: 128 IENFIGEKHPRRAKIVGRAQV---EISGQDIYVRGIDIEECGQTAANLEQATKIKRKDPR 184 Query: 177 KFLDGIYVSDK 145 F DGIY+ K Sbjct: 185 VFQDGIYIVKK 195 Score = 42.0 bits (97), Expect = 8e-04 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = -3 Query: 466 QNLITGVTKGFRYKMRFVYAHFPINASITASQ---PRHRDQELPRRKK 332 +NLITGV +GF Y ++ VYAHFPI + ++ ++ PRR K Sbjct: 94 ENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIENFIGEKHPRRAK 141
>CRIM1_MOUSE (Q9JLL0) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| (Fragment) Length = 1028 Score = 30.4 bits (67), Expect = 2.3 Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 15/96 (15%) Frame = -3 Query: 304 CDNPAVREGQGRDRPGWQ*H*ACLPLCCPD----QPEMPREEQGHQEVPGRHL------- 158 C NP +R GQ C P C D +PE+ H PG Sbjct: 639 CGNPTIRSGQ------------CCPSCTDDFVVQKPELSTPSICH--APGGEYFVEGETW 684 Query: 157 ----CQRQGRHQGRVVLSPPILPQLLCSR*QKLSES 62 C + H GRV+ + P LLC + +S Sbjct: 685 NIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRTQDS 720
>VE1_HPV58 (P26543) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 644 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 324 KVDMLDGVTILRSEKVKDEI--VLDGNDIELVSRSAALINQKC 202 K+ M+D VT + + D + LDGNDI + + AL+ KC Sbjct: 510 KLGMIDDVTAISWTYIDDYMRNALDGNDISIDVKHRALVQLKC 552
>MTERF_HUMAN (Q99551) Transcription termination factor, mitochondrial precursor| (mTERF) (Mitochondrial transcription termination factor 1) Length = 399 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -1 Query: 348 FLGEKKVR-KVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDI 181 FL EKK K+D L I S+ +++ VLD + L SR L+N C++ +I Sbjct: 322 FLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLSTLNI 378
>MTERF_PONPY (Q5R9U8) Transcription termination factor, mitochondrial precursor| (mTERF) (Mitochondrial transcription termination factor 1) Length = 398 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -1 Query: 348 FLGEKKVR-KVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDI 181 FL EKK K+D L I S+ +++ VLD + L SR L+N C++ +I Sbjct: 321 FLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLSTLNI 377
>CRIM1_BRARE (Q7T3Q2) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| Length = 1027 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 14/86 (16%) Frame = -3 Query: 304 CDNPAVREGQGRDRPGWQ*H*ACLPLCCPDQPEMPREEQGHQEV---PGRHL-------- 158 CDNP +R G C P C P++ + E V PG Sbjct: 643 CDNPTIRPGH------------CCPTC-PEESSSHKPELSEASVCLAPGGEYFVEGETWN 689 Query: 157 ---CQRQGRHQGRVVLSPPILPQLLC 89 C + H GRV+ + P LLC Sbjct: 690 IDSCTQCTCHSGRVLCETEVCPPLLC 715
>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7071 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 187 LVLHVAFLVDQGSRAGDKLNVIAIQDDLVLDLLGPQDCHTVKHVNFPYLF 336 +V+ V L G + + AIQD + D++ DC KH F F Sbjct: 2764 IVMPVHILSVHGGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWF 2813
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = -3 Query: 199 REEQGHQEVPGRHLCQRQGRHQGRVVLSPPILPQLLCSR*QKLSESSWSLSKQRSETVFL 20 +E Q EVP R Q G + P+L +LLC++ + E W++S + + L Sbjct: 298 QEAQDLNEVPAR---QNHGFARAAAADILPVLLKLLCNQDEDADEDDWNISMAAATCLQL 354 Query: 19 F 17 F Sbjct: 355 F 355
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 28.9 bits (63), Expect = 6.8 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Frame = -3 Query: 379 ASQPRHRDQELPRRKKGKES*HA*RCDNPAVR---EGQGRDRPGWQ*H*ACLPLCCPDQP 209 A +PR R R +G H + PAVR E Q R+ G + P P Sbjct: 166 AGRPRRRQPPRRGRSRGTHRRHLRQAPRPAVRGPDEDQAREFRGPRHRRERHP---PTAR 222 Query: 208 EMPREEQGHQEVPGRHLCQRQG--RHQGR 128 ++ R E GH + G HL R+G R QGR Sbjct: 223 DVLRGEPGHGD--GHHLEGRRGRPRPQGR 249
>VE1_HPV52 (P36730) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 647 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 324 KVDMLDGVTILRSEKVKDEI--VLDGNDIELVSRSAALINQKC 202 KV M+D VT + + D + LDGNDI + + AL+ KC Sbjct: 513 KVGMIDDVTPICWTYIDDYMRNALDGNDISVDVKHRALVQIKC 555
>PDR10_YEAST (P51533) ATP-dependent permease PDR10| Length = 1564 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +2 Query: 227 ERETSSMSLPSRTISSLTFSDRRIVTPSSMSTFLTFFSPRKFLISMPR 370 + +T S+ PS + TFSD P+ ++T +TF P FLI++ R Sbjct: 607 KHKTYSLYRPSADAFASTFSD----VPTKLATAVTFNIPYYFLINLKR 650
>CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| (Cysteine-rich repeat-containing protein S52) Length = 1036 Score = 28.5 bits (62), Expect = 8.9 Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 15/96 (15%) Frame = -3 Query: 304 CDNPAVREGQGRDRPGWQ*H*ACLPLCCPD----QPEMPREEQGHQEVPGRHL------- 158 C NP + GQ C P C D +PE+ H PG Sbjct: 648 CGNPTIHPGQ------------CCPSCADDFVVQKPELSTPSICH--APGGEYFVEGETW 693 Query: 157 ----CQRQGRHQGRVVLSPPILPQLLCSR*QKLSES 62 C + H GRV+ + P LLC + +S Sbjct: 694 NIDSCTQCTCHSGRVLCETEVCPPLLCQNPSRTQDS 729
>VE1_HPV33 (P06421) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 644 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 324 KVDMLDGVTILRSEKVKDEI--VLDGNDIELVSRSAALINQKC 202 K+ M+D VT + + D + LDGN+I + + AL+ KC Sbjct: 510 KIGMIDDVTPISWTYIDDYMRNALDGNEISIDVKHRALVQLKC 552 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,959,488 Number of Sequences: 219361 Number of extensions: 1211036 Number of successful extensions: 4064 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4058 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
