ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1c21 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 95.1 bits (235), Expect = 4e-20 Identities = 56/97 (57%), Positives = 59/97 (60%) Frame = -3 Query: 313 EYGHMLVQEQDNVKACAAC*HLHEPGSSG*CXPGCDEDWFLLRLXNSPYTPTISCCIGGG 134 EYGHMLVQEQDNVK L + S ++D S Y G Sbjct: 385 EYGHMLVQEQDNVKRV----QLADTYMSQAALGDANQD---AMKTGSFY----------G 427 Query: 133 KGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYXF 23 KGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY F Sbjct: 428 KGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464 Score = 60.5 bits (145), Expect = 1e-09 Identities = 29/30 (96%), Positives = 29/30 (96%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFYG 184 KRVQLADTYMSQAALGDA QDAMKTGSFYG Sbjct: 398 KRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 72.4 bits (176), Expect = 3e-13 Identities = 42/97 (43%), Positives = 49/97 (50%) Frame = -3 Query: 313 EYGHMLVQEQDNVKACAAC*HLHEPGSSG*CXPGCDEDWFLLRLXNSPYTPTISCCIGGG 134 EYG+MLV EQ+NVK E + I G Sbjct: 395 EYGNMLVMEQENVKRVQLA-----------------ETYLSQAALGDANADAIGRGTFYG 437 Query: 133 KGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYXF 23 KGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 438 KGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFYG 184 KRVQLA+TY+SQAALGDA DA+ G+FYG Sbjct: 408 KRVQLAETYLSQAALGDANADAIGRGTFYG 437
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 70.9 bits (172), Expect = 8e-13 Identities = 43/96 (44%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Frame = -3 Query: 313 EYGHMLVQEQDNVKACAAC*HLHEPGSSG*CXPGC-DEDWFLLRLXNSPYTPTISCCIGG 137 EYG+MLVQEQ+NVK + G D F Sbjct: 393 EYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFF------------------ 434 Query: 136 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 29 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470 Score = 45.8 bits (107), Expect = 3e-05 Identities = 21/30 (70%), Positives = 25/30 (83%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFYG 184 KRVQLAD YMS AALGDA +DA+ G+F+G Sbjct: 406 KRVQLADQYMSSAALGDANKDAIDRGTFFG 435
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 69.7 bits (169), Expect = 2e-12 Identities = 43/97 (44%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = -3 Query: 310 YGHMLVQEQDNVKACAAC*HLHEPGSSG*CXPGCDEDWFLLRLXNSPYTPTISCCIGGGK 131 YG MLVQEQ+NVK D+ L ++ GG+ Sbjct: 396 YGGMLVQEQENVKRVQLA----------------DKYMSEAALGDANNDAIKRGTFYGGQ 439 Query: 130 GAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYXF 23 AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 440 AAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/30 (76%), Positives = 26/30 (86%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFYG 184 KRVQLAD YMS+AALGDA DA+K G+FYG Sbjct: 408 KRVQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 50.4 bits (119), Expect(2) = 3e-10 Identities = 23/30 (76%), Positives = 26/30 (86%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFYG 184 KRVQLAD Y+S+AALG A DAMKTG+FYG Sbjct: 395 KRVQLADKYLSEAALGQANDDAMKTGAFYG 424 Score = 32.0 bits (71), Expect(2) = 3e-10 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYGHMLVQEQ+NVK Sbjct: 382 EYGHMLVQEQENVK 395
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 52.4 bits (124), Expect(2) = 1e-09 Identities = 24/30 (80%), Positives = 27/30 (90%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFYG 184 KRVQLA+ Y+S+AALGDA DAMKTGSFYG Sbjct: 398 KRVQLAEQYLSEAALGDANSDAMKTGSFYG 427 Score = 28.1 bits (61), Expect(2) = 1e-09 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYG+MLV+EQ+NVK Sbjct: 385 EYGYMLVKEQENVK 398
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 50.8 bits (120), Expect(2) = 1e-09 Identities = 23/30 (76%), Positives = 26/30 (86%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFYG 184 KRVQLAD Y+S+AALGDA DAM TG+FYG Sbjct: 408 KRVQLADKYLSEAALGDANSDAMNTGTFYG 437 Score = 29.3 bits (64), Expect(2) = 1e-09 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYG+MLVQEQ+NVK Sbjct: 395 EYGNMLVQEQENVK 408
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 48.1 bits (113), Expect(2) = 6e-09 Identities = 21/29 (72%), Positives = 27/29 (93%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFY 187 KRVQLAD Y+++AALG+A +DAMKTGSF+ Sbjct: 404 KRVQLADKYLNEAALGEANEDAMKTGSFF 432 Score = 29.6 bits (65), Expect(2) = 6e-09 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYGHMLV EQ+NVK Sbjct: 391 EYGHMLVAEQENVK 404
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 47.0 bits (110), Expect(2) = 8e-08 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSF 190 KRVQLAD YMS+AALGDA QDA+K G+F Sbjct: 408 KRVQLADKYMSEAALGDANQDAIKRGTF 435 Score = 26.9 bits (58), Expect(2) = 8e-08 Identities = 10/14 (71%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 +YG+MLV+EQ+NVK Sbjct: 395 QYGNMLVEEQENVK 408
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 44.7 bits (104), Expect(2) = 2e-07 Identities = 19/29 (65%), Positives = 27/29 (93%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFY 187 KRVQLAD Y+++AALG+A +DA+K+GSF+ Sbjct: 410 KRVQLADKYLNEAALGNANEDAIKSGSFF 438 Score = 28.1 bits (61), Expect(2) = 2e-07 Identities = 11/14 (78%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 +YG+MLVQEQ+NVK Sbjct: 397 QYGNMLVQEQENVK 410
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 43.1 bits (100), Expect(2) = 2e-07 Identities = 19/28 (67%), Positives = 24/28 (85%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSF 190 KRVQLA+TY+ +AALGDA DA+ TG+F Sbjct: 412 KRVQLAETYLKEAALGDANADAINTGNF 439 Score = 29.3 bits (64), Expect(2) = 2e-07 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYG+MLVQEQ+NVK Sbjct: 399 EYGNMLVQEQENVK 412
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 42.7 bits (99), Expect(2) = 3e-07 Identities = 19/29 (65%), Positives = 23/29 (79%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFY 187 KRVQLAD Y+ +AALGDA DA+ GSF+ Sbjct: 412 KRVQLADKYLKEAALGDANADAINNGSFF 440 Score = 29.3 bits (64), Expect(2) = 3e-07 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYG+MLVQEQ+NVK Sbjct: 399 EYGNMLVQEQENVK 412
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 40.4 bits (93), Expect(2) = 1e-06 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTG 196 KRVQLA+TY+ +AALGDA DA+ TG Sbjct: 407 KRVQLAETYLKEAALGDANADAINTG 432 Score = 29.3 bits (64), Expect(2) = 1e-06 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYG+MLVQEQ+NVK Sbjct: 394 EYGNMLVQEQENVK 407
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 44.7 bits (104), Expect(2) = 2e-06 Identities = 19/29 (65%), Positives = 27/29 (93%) Frame = -1 Query: 273 KRVQLADTYMSQAALGDAXQDAMKTGSFY 187 KRVQLAD Y+++AALG+A +DA+K+GSF+ Sbjct: 412 KRVQLADQYLNEAALGNANEDAIKSGSFF 440 Score = 24.3 bits (51), Expect(2) = 2e-06 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -3 Query: 310 YGHMLVQEQDNVK 272 Y MLVQEQ+NVK Sbjct: 400 YASMLVQEQENVK 412
>YKAB_BACPF (P30268) Probable aminotransferase in katA 3'region (EC 2.6.-.-)| (ORF B) Length = 445 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +2 Query: 194 EPVFIASWXASPRAAWLM*VSASCTRFDIVLLLDE 298 EPV P A+WL V C R DI+L+ DE Sbjct: 218 EPVLGEGGYIIPPASWLAKVREICNRHDILLIFDE 252
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -3 Query: 196 FLLRLXNSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 38 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +1 Query: 40 CRRRSLPLGRSSWHFGRCNLP 102 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 24.3 bits (51), Expect(2) = 4.6 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = -1 Query: 273 KRVQLADTYMSQAAL 229 KRVQLAD Y+S A L Sbjct: 380 KRVQLADAYLSGAEL 394 Score = 22.7 bits (47), Expect(2) = 4.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 +YG LV EQ+NVK Sbjct: 367 KYGKSLVDEQENVK 380
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 Query: 110 ARAGRLHRPKCQELRPNGKERRR 42 A+ R R K Q LRPNG E+RR Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169
>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic| region Length = 1764 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 106 VPEGCTDQNAKNYDPTARSD 47 VPE TD N NYD T R D Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402
>COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Collagen alpha-1(Y)| chain) Length = 1142 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -3 Query: 205 EDWFLLRLXNSPYTPTISCCIGGGKGAQQGTLPVPEG 95 E WFL ++ N P IS + GGK + EG Sbjct: 115 ERWFLWQVLNQQNIPQISIVVDGGKKVVEFMFQATEG 151
>ACS2L_MOUSE (Q99NB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial| precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) (AceCS2) (Acyl-CoA synthetase short-chain family member 1) Length = 682 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/54 (35%), Positives = 21/54 (38%) Frame = +2 Query: 80 ILVGATFRHGQSTLLCSFTSSYAARDGGCVWXIX*P*KEPVFIASWXASPRAAW 241 +L G R GQS S + S A R GCV P P A P A W Sbjct: 13 LLRGLQGRSGQSGWSLSVSRSTATRLPGCVPAAAQPGSYPALSAQAAQEPAAFW 66
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -3 Query: 313 EYGHMLVQEQDNVK 272 EYG+MLV EQ+NVK Sbjct: 392 EYGNMLVMEQENVK 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,477,347 Number of Sequences: 219361 Number of extensions: 876930 Number of successful extensions: 2314 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2254 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2313 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
