ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1c21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 543 e-151
2gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 468 e-129
3gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 468 e-129
4gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 387 e-104
5gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 327 1e-86
6emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 264 2e-67
7gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 264 2e-67
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 180 2e-42
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 129 6e-27
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 127 2e-26
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 127 2e-26
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 127 2e-26
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 115 9e-23
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 3e-22
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 96 8e-17
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
26gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 64 3e-07
27gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 64 3e-07
28gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 64 3e-07
29gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 64 3e-07
30gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 64 3e-07
31gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 60 4e-06
32gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 60 4e-06
33gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 60 4e-06
34gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 60 4e-06
35gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 48 0.017
36emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase 48 0.017
37gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.27
38gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.0
39gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 4.1
40gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 4.1
41gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 4.1
42gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 4.1
43ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 4.1
44gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 4.1
45gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co... 40 4.1
46ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 4.1
47gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 4.1
48gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 4.1
49gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 4.1
50gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 4.1
51gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 40 4.1
52ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 4.1
53ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 4.1
54gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 4.1 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  543 bits (274), Expect = e-151
 Identities = 310/318 (97%), Gaps = 4/318 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    gatattaaaagtggcatgcttaaaaggngtaaaggcagctgccgt-cgtcgctccttgcc 59
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1608 gatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgcc 1549

                                                                        
Query: 60   gttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cgggcaaagtacc 118
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1548 gttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgggcaaagtacc 1489

                                                                        
Query: 119  ttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgt-gtatggngaat 177
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 1488 ttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgttgtatggagaat 1429

                                                                        
Query: 178  tntctaaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgc 237
            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1428 tttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 1369

                                                                        
Query: 238  ctggctcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacga 297
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1368 ctggctcatgtaggtgtcagcaagctgcacacgc-ttgacattgtcctgctcctggacga 1310

                              
Query: 298  gcatgtgcccgtactcta 315
            ||||||||||||||||||
Sbjct: 1309 gcatgtgcccgtactcta 1292
to top
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  468 bits (236), Expect = e-129
 Identities = 287/304 (94%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  tggcatgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtag 71
           |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct: 664 tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaag 605

                                                                       
Query: 72  ttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcct 131
           ||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| |||
Sbjct: 604 ttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccct 545

                                                                       
Query: 132 ttacctcctcctatgcagcaagagatggtgggtgtgtatggngaattntctaaccgtaga 191
           ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||
Sbjct: 544 ttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtaga 485

                                                                       
Query: 192 aggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatgtagg 251
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 484 aggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtagg 425

                                                                       
Query: 252 tgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccgtac 311
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgtcagcaagctgcacacgc-ttgacattgtcctgctcctggacgagcatgtgcccgtac 366

               
Query: 312 tcta 315
           ||||
Sbjct: 365 tcta 362
to top
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  468 bits (236), Expect = e-129
 Identities = 287/304 (94%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                        
Query: 12   tggcatgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtag 71
            |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct: 1514 tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaag 1455

                                                                        
Query: 72   ttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcct 131
            ||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| |||
Sbjct: 1454 ttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccct 1395

                                                                        
Query: 132  ttacctcctcctatgcagcaagagatggtgggtgtgtatggngaattntctaaccgtaga 191
            ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||
Sbjct: 1394 ttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtaga 1335

                                                                        
Query: 192  aggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatgtagg 251
            ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1334 aggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtagg 1275

                                                                        
Query: 252  tgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccgtac 311
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 tgtcagcaagctgcacacgc-ttgacattgtcctgctcctggacgagcatgtgcccgtac 1216

                
Query: 312  tcta 315
            ||||
Sbjct: 1215 tcta 1212
to top
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  387 bits (195), Expect = e-104
 Identities = 279/306 (91%), Gaps = 3/306 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaagtggcatgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtc 67
            |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 68   gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 127
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408

                                                                        
Query: 128  tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggngaattntctaaccg 187
            |||||||||||||||||||||||||||||||||||||||  |||  || |  ||||||||
Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350

                                                                        
Query: 188  tagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatg 247
            |||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||
Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290

                                                                        
Query: 248  taggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgccc 307
            || ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct: 1289 taagtgtccgcaagctgcacacgc-ttgacattgtcctgctcctggacaagcatgtggcc 1231

                  
Query: 308  gtactc 313
            ||||||
Sbjct: 1230 gtactc 1225
to top
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  327 bits (165), Expect = 1e-86
 Identities = 178/182 (97%), Gaps = 1/182 (0%)
 Strand = Plus / Minus

                                                                        
Query: 134  acctcctcctatgcagcaagagatggtgggtgtgtatggngaattntctaaccgtagaag 193
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 194  gaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatgtaggtg 253
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 254  tcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccgtactc 313
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgc-ttgacattgtcctgctcctggacgagcatgtgcccgtactc 7177

              
Query: 314  ta 315
            ||
Sbjct: 7176 ta 7175



 Score =  268 bits (135), Expect = 1e-68
 Identities = 137/138 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gatattaaaagtggcatgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccg 60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7660 gatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccg 7601

                                                                        
Query: 61   ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacctt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacctt 7541

                              
Query: 121  gctgtgctcctttacctc 138
            ||||||||||||||||||
Sbjct: 7540 gctgtgctcctttacctc 7523



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 49/54 (90%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 260  agctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccgtactc 313
            |||||||||||||| ||| || |||||||||||||| |||||||| ||||||||
Sbjct: 3961 agctgcacacgctt-gacgttctcctgctcctggaccagcatgtggccgtactc 3909
to top
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  264 bits (133), Expect = 2e-67
 Identities = 149/154 (96%), Gaps = 1/154 (0%)
 Strand = Plus / Minus

                                                                       
Query: 162 ggtgtgtatggngaattntctaaccgtagaaggaaccagtcttcatcgcatcctggntag 221
           ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 222 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgctttgacattg 281
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgc-ttgacattg 190

                                             
Query: 282 tcctgctcctggacgagcatgtgcccgtactcta 315
           ||||||||||||||||||||||||||||||||||
Sbjct: 189 tcctgctcctggacgagcatgtgcccgtactcta 156
to top
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  264 bits (133), Expect = 2e-67
 Identities = 135/136 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gatattaaaagtggcatgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccg 60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1300 gatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccg 1241

                                                                        
Query: 61   ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacctt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacctt 1181

                            
Query: 121  gctgtgctcctttacc 136
            ||||||||||||||||
Sbjct: 1180 gctgtgctcctttacc 1165



 Score =  240 bits (121), Expect = 2e-60
 Identities = 130/132 (98%), Gaps = 1/132 (0%)
 Strand = Plus / Minus

                                                                        
Query: 184  accgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggct 243
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 244  catgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgt 303
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgc-ttgacattgtcctgctcctggacgagcatgt 1049

                        
Query: 304  gcccgtactcta 315
            ||||||||||||
Sbjct: 1048 gcccgtactcta 1037
to top
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  180 bits (91), Expect = 2e-42
 Identities = 121/130 (93%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 184  accgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggct 243
            |||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 244  catgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgt 303
            |||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgc-ttgacattgtcctgctcctggacaagcatgt 1245

                      
Query: 304  gcccgtactc 313
            | ||||||||
Sbjct: 1244 ggccgtactc 1235



 Score =  170 bits (86), Expect = 2e-39
 Identities = 118/129 (91%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaagtggcatgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtc 67
            |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 68   gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 127
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 128  tcctttacc 136
            |||||||||
Sbjct: 1369 tcctttacc 1361
to top
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  129 bits (65), Expect = 6e-27
 Identities = 114/130 (87%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 77   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 133
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 134  acctcctcct 143
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
            ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 243  tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
            ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 1192

                       
Query: 303  tgcccgtactc 313
            |  ||||||||
Sbjct: 1191 tatccgtactc 1181
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  129 bits (65), Expect = 6e-27
 Identities = 114/130 (87%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 77   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 133
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 134  acctcctcct 143
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
            ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 243  tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
            ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 1230

                       
Query: 303  tgcccgtactc 313
            |  ||||||||
Sbjct: 1229 tatccgtactc 1219
to top
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  129 bits (65), Expect = 6e-27
 Identities = 114/130 (87%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 77   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 133
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 134  acctcctcct 143
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
            ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 243  tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
            ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 1229

                       
Query: 303  tgcccgtactc 313
            |  ||||||||
Sbjct: 1228 tatccgtactc 1218
to top
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  129 bits (65), Expect = 6e-27
 Identities = 114/130 (87%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 77   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 133
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 134  acctcctcct 143
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
            ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 243  tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
            ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 1013

                       
Query: 303  tgcccgtactc 313
            |  ||||||||
Sbjct: 1012 tatccgtactc 1002
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  129 bits (65), Expect = 6e-27
 Identities = 114/130 (87%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 77   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 133
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 134  acctcctcct 143
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
            ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 243  tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
            ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 1234

                       
Query: 303  tgcccgtactc 313
            |  ||||||||
Sbjct: 1233 tatccgtactc 1223
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                          
Query: 17     tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
              ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 77     ggcattttggtcggtgcaaccttccggcacgggca 111
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 110/134 (82%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                          
Query: 180    tctaaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcct 239
              |||||||||||||||||||||||||||| || ||   | |||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 240    ggctcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagc 299
               ||||| |||    ||||| |||||||||||| ||||| || ||||||||||  || |||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagc 108424

                            
Query: 300    atgtgcccgtactc 313
              ||||  ||||||||
Sbjct: 108425 atgtatccgtactc 108438



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 35     gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 94
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 95     accttccggcacggg 109
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                         
Query: 17    tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
             ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 77    ggcattttggtcggtgcaaccttccggcacgggca 111
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 110/134 (82%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                         
Query: 180   tctaaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcct 239
             |||||||||||||||||||||||||||| || ||   | |||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 240   ggctcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagc 299
              ||||| |||    ||||| |||||||||||| ||||| || ||||||||||  || |||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagc 30301

                           
Query: 300   atgtgcccgtactc 313
             ||||  ||||||||
Sbjct: 30302 atgtatccgtactc 30315



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 35    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 94
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 95    accttccggcacggg 109
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 77   ggcattttggtcggtgcaaccttccggcacgggca 111
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
            ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 243  tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
            ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 1198

                       
Query: 303  tgcccgtactc 313
            |  ||||||||
Sbjct: 1197 tatccgtactc 1187
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 77   ggcattttggtcggtgcaaccttccggcacgggca 111
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 105/129 (81%), Gaps = 1/129 (0%)
 Strand = Plus / Minus

                                                                        
Query: 185  ccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctc 244
            ||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 245  atgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtg 304
            | |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||| 
Sbjct: 1249 aagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatgta 1191

                     
Query: 305  cccgtactc 313
             ||||||||
Sbjct: 1190 tccgtactc 1182
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 17       tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
                ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 77       ggcattttggtcggtgcaaccttccggcacgggca 111
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 110/134 (82%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                            
Query: 180      tctaaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcct 239
                |||||||||||||||||||||||||||| || ||   | |||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 240      ggctcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagc 299
                 ||||| |||    ||||| |||||||||||| ||||| || ||||||||||  || |||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagc 28303563

                              
Query: 300      atgtgcccgtactc 313
                ||||  ||||||||
Sbjct: 28303564 atgtatccgtactc 28303577



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 35       gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 94
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 95       accttccggcacggg 109
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 17       tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
                ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 77       ggcattttggtcggtgcaaccttccggcacgggca 111
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 110/134 (82%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                            
Query: 180      tctaaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcct 239
                |||||||||||||||||||||||||||| || ||   | |||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 240      ggctcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagc 299
                 ||||| |||    ||||| |||||||||||| ||||| || ||||||||||  || |||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagc 28286012

                              
Query: 300      atgtgcccgtactc 313
                ||||  ||||||||
Sbjct: 28286013 atgtatccgtactc 28286026



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 35       gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 94
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 95       accttccggcacggg 109
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 77   ggcattttggtcggtgcaaccttccggcacgggca 111
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 105/129 (81%), Gaps = 1/129 (0%)
 Strand = Plus / Minus

                                                                        
Query: 185  ccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctc 244
            ||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 245  atgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtg 304
            | |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||| 
Sbjct: 1284 aagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatgta 1226

                     
Query: 305  cccgtactc 313
             ||||||||
Sbjct: 1225 tccgtactc 1217
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  115 bits (58), Expect = 9e-23
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                       
Query: 23  aaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 82
           ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 83  ttggtcggtgcaaccttccggcacgggca 111
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  113 bits (57), Expect = 3e-22
 Identities = 113/130 (86%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 77   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 133
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 134  acctcctcct 143
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
            ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 243  tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
            ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 1241

                       
Query: 303  tgcccgtactc 313
            |  ||||||||
Sbjct: 1240 tatccgtactc 1230
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 17  tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
           ||||||||||   |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 77  ggcattttggtcggtgcaaccttccggcacgggca 111
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                           
Query: 17      tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
               |||||| |||| |||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 77      ggcattttggtcggtgcaaccttccggcacgggca 111
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                         
Query: 17    tgcttaaaaggngtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 76
             |||||| |||| |||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 77    ggcattttggtcggtgcaaccttccggcacgggca 111
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 107/131 (81%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                       
Query: 183 aaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggc 242
           ||||||||||||||||||||||||| || ||   | |||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 243 tcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatg 302
           ||| |||    ||||| |||||||||||| ||||| || ||||||||||  || ||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgc-ttgacgttctcctgctccttcacaagcatg 447

                      
Query: 303 tgcccgtactc 313
           |  ||||||||
Sbjct: 446 tatccgtactc 436
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 33   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 92
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1444 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1385

                    
Query: 93   caaccttc 100
            ||||||||
Sbjct: 1384 caaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 33   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 92
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1269 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1210

                    
Query: 93   caaccttc 100
            ||||||||
Sbjct: 1209 caaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 33   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 92
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1143 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1084

                    
Query: 93   caaccttc 100
            ||||||||
Sbjct: 1083 caaccttc 1076



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 108/133 (81%), Gaps = 1/133 (0%)
 Strand = Plus / Minus

                                                                        
Query: 181  ctaaccgtagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctg 240
            |||||| |||||||| |||||||| ||||| |||||  | || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 241  gctcatgtaggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagca 300
            ||||| |||  |||| || |||||||| | |||  || || ||||||||||| || ||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttc-acgttctcctgctcctgcaccagca 889

                         
Query: 301  tgtgcccgtactc 313
            |||  ||||||||
Sbjct: 888  tgttgccgtactc 876
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 33   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 92
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1299 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1240

                    
Query: 93   caaccttc 100
            ||||||||
Sbjct: 1239 caaccttc 1232



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 102/126 (80%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                        
Query: 188  tagaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatg 247
            |||||||| |||||||| ||||| |||||  | || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 248  taggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgccc 307
            ||  |||| || |||||||| | |||  || || ||||||||||| || |||||||  ||
Sbjct: 1134 tacttgtcggccagctgcaccctcttc-acgttctcctgctcctgcaccagcatgttgcc 1076

                  
Query: 308  gtactc 313
            ||||||
Sbjct: 1075 gtactc 1070
to top
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 102/125 (81%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                       
Query: 189 agaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatgt 248
           ||||||| ||||||||||| || |||| | | || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 249 aggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccg 308
           |  |||||||||||||||||||| ||||| || |||||||||   || |||||||| |||
Sbjct: 859 acttgtcagcaagctgcacacgc-ttgacgttctcctgctccgccaccagcatgtgtccg 801

                
Query: 309 tactc 313
           |||||
Sbjct: 800 tactc 796
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 102/125 (81%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                        
Query: 189  agaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatgt 248
            ||||||| ||||||||||| || |||| | | || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 249  aggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccg 308
            |  |||||||||||||||||||| ||||| || |||||||||   || |||||||| |||
Sbjct: 1254 acttgtcagcaagctgcacacgc-ttgacgttctcctgctccgccaccagcatgtgtccg 1196

                 
Query: 309  tactc 313
            |||||
Sbjct: 1195 tactc 1191
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 102/125 (81%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                        
Query: 189  agaaggaaccagtcttcatcgcatcctggntagcatcacccagagctgcctggctcatgt 248
            ||||||| ||||||||||| || |||| | | || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 249  aggtgtcagcaagctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccg 308
            |  |||||||||||||||||||| ||||| || |||||||||   || |||||||| |||
Sbjct: 1254 acttgtcagcaagctgcacacgc-ttgacgttctcctgctccgccaccagcatgtgtccg 1196

                 
Query: 309  tactc 313
            |||||
Sbjct: 1195 tactc 1191
to top
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 49/54 (90%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 260  agctgcacacgctttgacattgtcctgctcctggacgagcatgtgcccgtactc 313
            |||||||||||||| ||| || |||||||||||||| |||||||| ||||||||
Sbjct: 1392 agctgcacacgctt-gacgttctcctgctcctggaccagcatgtggccgtactc 1340
to top
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 282  tcctgctcctggacgagcatgtgcccgtactc 313
            |||||||||||||| |||||||| ||||||||
Sbjct: 1221 tcctgctcctggaccagcatgtggccgtactc 1190
to top
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 276 acattgtcctgctcctggacgagcatgt 303
           |||||||||||||||||||| |||||||
Sbjct: 49  acattgtcctgctcctggacaagcatgt 22
to top
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 222   catcacccagagctgcctggct 243
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 144   atgcagcaagagatggtgggt 164
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
to top
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   cctttacctcctcctatgca 148
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
to top
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  catcacccagagctgcctggctca 245
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
to top
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  cctttacctcctcctatgca 148
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
to top
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   cctttacctcctcctatgca 148
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
to top
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 253 gtcagcaagctgcacacgct 272
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
to top
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  catcacccagagctgcctggctca 245
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    ttgacattgtcctgctcctg 292
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419
to top
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  catcacccagagctgcctggctca 245
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   cctttacctcctcctatgca 148
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
to top
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  catcacccagagctgcctggctca 245
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
to top
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  catcacccagagctgcctggctca 245
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
to top
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  catcacccagagctgcctggctca 245
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    ttgacattgtcctgctcctg 292
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979
to top
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  catcacccagagctgcctggctca 245
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 cttgctgtgctcctttacctcctc 141
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
to top
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cctttacctcctcctatgca 148
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,036,200
Number of Sequences: 3902068
Number of extensions: 2036200
Number of successful extensions: 37837
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37653
Number of HSP's gapped (non-prelim): 131
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top