| Clone Name | rbags24f03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105327.1| Zea mays PCO147247 mRNA sequence Length = 1954 Score = 163 bits (82), Expect = 8e-37 Identities = 178/210 (84%) Strand = Plus / Minus Query: 338 gaagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaag 397 ||||||| | |||||||| ||||| || |||||||| || ||||| ||||| ||||| || Sbjct: 1593 gaagatgtacgccttcacttcctcgaagcgctcctcggagagagagacctcggcgaggag 1534 Query: 398 cctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtg 457 |||| || || | ||| || |||||||| ||||| ||||||||||||| || ||||| Sbjct: 1533 tttccacgcggaggtttcagatgcctcctcatagtccatcctccgtttcagcaccatgtg 1474 Query: 458 tccactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttc 517 ||||||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 1473 tccactgatctcccacacagctgggttcacctgagtgtccagcagctcctggctcacttc 1414 Query: 518 accaagagcctgtttctcagcatagcactg 547 ||| |||||||| ||||| || |||||||| Sbjct: 1413 acccagagcctgcttctctgcgtagcactg 1384
>dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M14, full insert sequence Length = 2088 Score = 153 bits (77), Expect = 7e-34 Identities = 188/225 (83%) Strand = Plus / Minus Query: 339 aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 398 |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || Sbjct: 1631 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 1572 Query: 399 ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 458 ||||| || || |||||||| ||||||||| | || |||| |||||||| || ||||| Sbjct: 1571 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 1512 Query: 459 ccactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttca 518 |||||||||||||| || || ||||| |||||||||||||| || |||||||||||||| Sbjct: 1511 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 1452 Query: 519 ccaagagcctgtttctcagcatagcactgaggaaaaacgaagatc 563 || |||||||| ||||| |||||||||||||| || | ||||||| Sbjct: 1451 cccagagcctgcttctcggcatagcactgagggaagaggaagatc 1407
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 145 bits (73), Expect = 2e-31 Identities = 175/209 (83%) Strand = Plus / Plus Query: 339 aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 398 |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || Sbjct: 4532519 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 4532578 Query: 399 ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 458 ||||| || || |||||||| ||||||||| | || |||| |||||||| || ||||| Sbjct: 4532579 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 4532638 Query: 459 ccactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttca 518 |||||||||||||| || || ||||| |||||||||||||| || |||||||||||||| Sbjct: 4532639 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 4532698 Query: 519 ccaagagcctgtttctcagcatagcactg 547 || |||||||| ||||| ||||||||||| Sbjct: 4532699 cccagagcctgcttctcggcatagcactg 4532727
>dbj|AK059556.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G08, full insert sequence Length = 1295 Score = 145 bits (73), Expect = 2e-31 Identities = 187/225 (83%) Strand = Plus / Minus Query: 339 aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 398 |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || Sbjct: 873 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 814 Query: 399 ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 458 ||||| || || |||||||| ||||||||| | || |||| |||||||| || ||||| Sbjct: 813 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 754 Query: 459 ccactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttca 518 |||||||||||||| || || ||||| |||||||||||||| || ||||||| |||||| Sbjct: 753 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggcccacttct 694 Query: 519 ccaagagcctgtttctcagcatagcactgaggaaaaacgaagatc 563 || |||||||| ||||| |||||||||||||| || | ||||||| Sbjct: 693 cccagagcctgcttctcggcatagcactgagggaagaggaagatc 649
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 145 bits (73), Expect = 2e-31 Identities = 175/209 (83%) Strand = Plus / Plus Query: 339 aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 398 |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || Sbjct: 4532500 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 4532559 Query: 399 ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 458 ||||| || || |||||||| ||||||||| | || |||| |||||||| || ||||| Sbjct: 4532560 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 4532619 Query: 459 ccactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttca 518 |||||||||||||| || || ||||| |||||||||||||| || |||||||||||||| Sbjct: 4532620 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 4532679 Query: 519 ccaagagcctgtttctcagcatagcactg 547 || |||||||| ||||| ||||||||||| Sbjct: 4532680 cccagagcctgcttctcggcatagcactg 4532708
>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129155 Score = 145 bits (73), Expect = 2e-31 Identities = 175/209 (83%) Strand = Plus / Minus Query: 339 aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 398 |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || Sbjct: 72259 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 72200 Query: 399 ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 458 ||||| || || |||||||| ||||||||| | || |||| |||||||| || ||||| Sbjct: 72199 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 72140 Query: 459 ccactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttca 518 |||||||||||||| || || ||||| |||||||||||||| || |||||||||||||| Sbjct: 72139 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 72080 Query: 519 ccaagagcctgtttctcagcatagcactg 547 || |||||||| ||||| ||||||||||| Sbjct: 72079 cccagagcctgcttctcggcatagcactg 72051
>gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, complete sequence Length = 1732 Score = 131 bits (66), Expect = 3e-27 Identities = 174/210 (82%) Strand = Plus / Minus Query: 338 gaagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaag 397 ||||||| | |||||||| ||||| || |||||||| || || || ||||| || || || Sbjct: 1335 gaagatgtacgccttcacttcctcgaagcgctcctcagagagggagacctcagcaaggag 1276 Query: 398 cctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtg 457 | |||| || || | ||| || |||||||| |||| ||||||| ||||| || ||||| Sbjct: 1275 cttccacgcggaggtttcagatgcctcctcatagtcgttcctccgcttcagcacgatgtg 1216 Query: 458 tccactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttc 517 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 1215 gccactgatctcccacacagctgggttcacctgagtgtccagcagctcctggctcacttc 1156 Query: 518 accaagagcctgtttctcagcatagcactg 547 ||| |||||||| ||||| ||||| ||||| Sbjct: 1155 acccagagcctgcttctctgcataacactg 1126
>gb|AY570979.1| Xerophyta humilis clone HC437 unknown mRNA Length = 1266 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 465 atctcccatactgcagggttcacctgcgtgtccagcagatcctggctcacttcaccaaga 524 ||||||||||| ||||| || || || |||||||||| || |||||||||| ||||| Sbjct: 783 atctcccatacggcaggattaacttgagtgtccagcaactcttggctcacttgcccaagt 724 Query: 525 gcctgtttctcagcatagcactgagg 550 ||||| ||||| ||||| |||||||| Sbjct: 723 gcctgcttctctgcataacactgagg 698
>ref|NM_118819.2| Arabidopsis thaliana VTC2 (VITAMIN C DEFECTIVE 2) AT4G26850 (VTC2) mRNA, complete cds Length = 2084 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 1573 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 1514 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 1513 tccgggctcacttcacctagagcctgtttctc 1482
>gb|BT013858.1| Lycopersicon esculentum clone 132824R, mRNA sequence Length = 2013 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 456 tgtccactgatctcccatactgcagggttcacctgcgtgtccag 499 |||||||| || |||||||| |||||||||||||| |||||||| Sbjct: 1502 tgtccactaatttcccatacagcagggttcacctgagtgtccag 1459
>gb|AY056134.1| Arabidopsis thaliana unknown protein (At4g26850) mRNA, complete cds Length = 2097 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 1571 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 1512 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 1511 tccgggctcacttcacctagagcctgtttctc 1480
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 3376 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 3435 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 3436 tccgggctcacttcacctagagcctgtttctc 3467
>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65 Length = 198320 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 196696 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 196755 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 196756 tccgggctcacttcacctagagcctgtttctc 196787
>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project) Length = 128574 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 47533 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 47592 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 47593 tccgggctcacttcacctagagcctgtttctc 47624
>gb|AF508793.1| Arabidopsis thaliana VTC2 (VTC2) gene, complete cds Length = 1884 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 1625 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 1566 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 1565 tccgggctcacttcacctagagcctgtttctc 1534
>gb|AY093138.1| Arabidopsis thaliana putative protein (At4g26850) mRNA, complete cds Length = 2045 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 1571 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 1512 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 1511 tccgggctcacttcacctagagcctgtttctc 1480
>gb|BT006589.1| Arabidopsis thaliana At4g26850 mRNA, complete cds Length = 1329 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 444 ttcagaacaatgtgtccactgatctcccatactgcagggttcacctgcgtgtccagcaga 503 ||||| || ||||| ||||| |||||||| || || |||||||| || || |||| | Sbjct: 1070 ttcagtaccatgtgaccacttatctcccacacggctgggttcacttgtgtttccaatacc 1011 Query: 504 tcctggctcacttcaccaagagcctgtttctc 535 ||| ||||||||||||| |||||||||||||| Sbjct: 1010 tccgggctcacttcacctagagcctgtttctc 979
>ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; PAM; rpm 1 (LOC418808), mRNA Length = 16077 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 284 aggtggctcgttggattcctcttcttcatca 314 ||||||||| ||||||||||||||||||||| Sbjct: 900 aggtggctctttggattcctcttcttcatca 870
>emb|CR353672.1| Gallus gallus finished cDNA, clone ChEST231o13 Length = 1096 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 284 aggtggctcgttggattcctcttcttcatca 314 ||||||||| ||||||||||||||||||||| Sbjct: 568 aggtggctctttggattcctcttcttcatca 538
>ref|NM_015057.2| Homo sapiens MYC binding protein 2 (MYCBP2), mRNA Length = 14734 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 288 ggctcgttggattcctcttcttcatca 314 ||||| ||||||||||||||||||||| Sbjct: 552 ggctctttggattcctcttcttcatca 526
>emb|AL159158.12| Human DNA sequence from clone RP11-81G4 on chromosome 13 Contains the 5' end of a novel gene (KIAA0916) and two CpG islands, complete sequence Length = 154682 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 288 ggctcgttggattcctcttcttcatca 314 ||||| ||||||||||||||||||||| Sbjct: 15043 ggctctttggattcctcttcttcatca 15069
>gb|AF075587.1|AF075587 Homo sapiens protein associated with Myc mRNA, complete cds Length = 14807 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 288 ggctcgttggattcctcttcttcatca 314 ||||| ||||||||||||||||||||| Sbjct: 607 ggctctttggattcctcttcttcatca 581
>gb|AY579201.1| Tetrahymena thermophila DNA topoisomerase type 2 (TOP2A) mRNA, complete cds Length = 4430 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 299 ttcctcttcttcatcagattca 320 |||||||||||||||||||||| Sbjct: 4222 ttcctcttcttcatcagattca 4201
>ref|XM_809076.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein (Tc00.1047053511215.119) partial mRNA Length = 1803 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 350 cttcacctcctcaaatcgctcc 371 |||||||||||||||||||||| Sbjct: 1089 cttcacctcctcaaatcgctcc 1068
>ref|XM_797553.1| Trypanosoma cruzi strain CL Brener paraxonemal rod protein PAR2 (Tc00.1047053434931.10) partial mRNA Length = 795 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 350 cttcacctcctcaaatcgctcc 371 |||||||||||||||||||||| Sbjct: 81 cttcacctcctcaaatcgctcc 60
>ref|XM_802852.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein (Tc00.1047053508961.79) partial mRNA Length = 1080 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 350 cttcacctcctcaaatcgctcc 371 |||||||||||||||||||||| Sbjct: 366 cttcacctcctcaaatcgctcc 345
>gb|M97548.1|TRBPAR2A Trypanosoma cruzi major paraflagellar rod protein (PAR2) mRNA, complete cds Length = 2057 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 350 cttcacctcctcaaatcgctcc 371 |||||||||||||||||||||| Sbjct: 1137 cttcacctcctcaaatcgctcc 1116
>gb|AC136523.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0018C06, complete sequence Length = 179695 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 ttggattcctcttcttcatca 314 ||||||||||||||||||||| Sbjct: 27655 ttggattcctcttcttcatca 27675
>emb|Z49131.1|CEZC373 Caenorhabditis elegans Cosmid ZC373, complete sequence Length = 27030 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 487 cctgcgtgtccagcagatcctggct 511 |||| |||||||||||||||||||| Sbjct: 23716 cctgggtgtccagcagatcctggct 23692
>emb|Z82182.2|HSE90C2 Human DNA sequence from clone LL22NC01-90C2 on chromosome 22 Contains an STSs and GSSs, complete sequence Length = 39004 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 tttcagaacaatgtgtccact 463 ||||||||||||||||||||| Sbjct: 24888 tttcagaacaatgtgtccact 24908
>gb|AC145338.7| Pan troglodytes clone rp43-47g15, complete sequence Length = 202653 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 tttcagaacaatgtgtccact 463 ||||||||||||||||||||| Sbjct: 28242 tttcagaacaatgtgtccact 28262
>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence Length = 114031 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 gattcctcttcttcatcagat 317 ||||||||||||||||||||| Sbjct: 8255 gattcctcttcttcatcagat 8275
>gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, complete sequence Length = 198052 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 ggtaactaatcagaggcagaa 100 ||||||||||||||||||||| Sbjct: 95865 ggtaactaatcagaggcagaa 95885
>ref|NM_077291.2| Caenorhabditis elegans COLlagen family member (col-176) (col-176) mRNA, complete cds Length = 939 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 487 cctgcgtgtccagcagatcctggct 511 |||| |||||||||||||||||||| Sbjct: 559 cctgggtgtccagcagatcctggct 535
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 ttggattcctcttcttcatca 314 ||||||||||||||||||||| Sbjct: 7050851 ttggattcctcttcttcatca 7050831
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 ttggattcctcttcttcatca 314 ||||||||||||||||||||| Sbjct: 11944841 ttggattcctcttcttcatca 11944861
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 tcctcttcttcatcagattca 320 ||||||||||||||||||||| Sbjct: 17929939 tcctcttcttcatcagattca 17929919
>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0520B06 Length = 142667 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 tcctcttcttcatcagattca 320 ||||||||||||||||||||| Sbjct: 49774 tcctcttcttcatcagattca 49754
>dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1165C09 Length = 202985 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 ttggattcctcttcttcatca 314 ||||||||||||||||||||| Sbjct: 168899 ttggattcctcttcttcatca 168879
>dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0674B07 Length = 192191 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 ttggattcctcttcttcatca 314 ||||||||||||||||||||| Sbjct: 96337 ttggattcctcttcttcatca 96317
>gb|U91900.1|DBU91900 Dunaliella bardawil phytoene synthase mRNA, complete cds Length = 1278 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gatgcatgccttcacctcctc 361 ||||||||||||||||||||| Sbjct: 984 gatgcatgccttcacctcctc 964
>gb|AY833719.1| Canis familiaris TERT gene, promoter region and partial CDS Length = 2054 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 caagagcctgtttctcagca 539 |||||||||||||||||||| Sbjct: 1044 caagagcctgtttctcagca 1063
>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence Length = 198815 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 acacatacctgtgcttaata 35 |||||||||||||||||||| Sbjct: 62708 acacatacctgtgcttaata 62727
>gb|AC131083.8| Mus musculus chromosome 1, clone RP23-444L13, complete sequence Length = 182591 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cctccaggccgatgcttctg 417 |||||||||||||||||||| Sbjct: 172560 cctccaggccgatgcttctg 172541
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gtgaggccggcggcctggaa 340 |||||||||||||||||||| Sbjct: 2138822 gtgaggccggcggcctggaa 2138803
>ref|NM_001031001.1| Gallus gallus serpin peptidase inhibitor, clade B (ovalbumin), member 3 (SERPINB3), mRNA Length = 1972 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 attcctcttcttcatcagat 317 |||||||||||||||||||| Sbjct: 1162 attcctcttcttcatcagat 1181
>gb|AY563633.1| Canis familiaris telomerase reverse transcriptase subunit gene, promoter region, 5'UTR, exons 1, 2 and partial cds Length = 5729 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 caagagcctgtttctcagca 539 |||||||||||||||||||| Sbjct: 4424 caagagcctgtttctcagca 4443
>ref|XR_005345.1| PREDICTED: Mus musculus RIKEN cDNA A930024E05 gene (A930024E05Rik), misc RNA Length = 1890 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 cacacacatacctgtgcttaataataaa 40 ||||||||||||||||| ||| |||||| Sbjct: 1850 cacacacatacctgtgcgtaaaaataaa 1877
>ref|XR_005251.1| PREDICTED: Mus musculus RIKEN cDNA A930024E05 gene (A930024E05Rik), misc RNA Length = 1890 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 cacacacatacctgtgcttaataataaa 40 ||||||||||||||||| ||| |||||| Sbjct: 1850 cacacacatacctgtgcgtaaaaataaa 1877
>gb|DQ465931.1| Fusarium oxysporum isolate SAT75 translation elongation factor 1a gene, partial sequence Length = 686 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ccagagtcgacttggccgat 201 |||||||||||||||||||| Sbjct: 48 ccagagtcgacttggccgat 29
>gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complete sequence Length = 190110 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 cacacacatacctgtgcttaataataaa 40 ||||||||||||||||| ||| |||||| Sbjct: 41197 cacacacatacctgtgcgtaaaaataaa 41170
>gb|AC121917.2| Mus musculus BAC clone RP24-194F23 from 5, complete sequence Length = 178113 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 taataataaactgcacagta 50 |||||||||||||||||||| Sbjct: 77669 taataataaactgcacagta 77688
>gb|AC025774.5| Homo sapiens chromosome 5 clone CTD-2292N2, complete sequence Length = 155092 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 ctcagcatagcactgaggaa 552 |||||||||||||||||||| Sbjct: 11920 ctcagcatagcactgaggaa 11939
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gccggcggcctggaagatgc 345 |||||||||||||||||||| Sbjct: 3489405 gccggcggcctggaagatgc 3489386
>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains the 5' end of the Osbp2 gene for oxysterol binding protein 2, a novel pseudogene, two novel genes, the Dusp18 gene for dual specificity phosphatase 18 and five CpG islands, complete sequence Length = 205509 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 188086 tcaccaagagcctgtttatcagca 188109
>gb|J00922.1|CHKY Gallus gallus ovalbumin (oval-Y) gene, complete cds Length = 8372 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 attcctcttcttcatcagat 317 |||||||||||||||||||| Sbjct: 7457 attcctcttcttcatcagat 7476
>dbj|AK042918.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730039H10 product:hypothetical protein, full insert sequence Length = 1891 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 cacacacatacctgtgcttaataataaa 40 ||||||||||||||||| ||| |||||| Sbjct: 1850 cacacacatacctgtgcgtaaaaataaa 1877
>dbj|AK081916.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130087D18 product:hypothetical Dual specificity protein phosphatase containing protein, full insert sequence Length = 2613 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 374 tcaccaagagcctgtttatcagca 397
>dbj|AK080729.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930024E05 product:hypothetical protein, full insert sequence Length = 1800 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 cacacacatacctgtgcttaataataaa 40 ||||||||||||||||| ||| |||||| Sbjct: 1766 cacacacatacctgtgcgtaaaaataaa 1793
>dbj|AK079664.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330102O14 product:weakly similar to BA386N14.1 (NOVEL PROTEIN SIMILAR TO A DUAL SPECIFICITY PHOSPHATASE) [Homo sapiens], full insert sequence Length = 2680 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 411 tcaccaagagcctgtttatcagca 434
>dbj|AK015917.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930527G07 product:weakly similar to DUAL SPECIFICITY PROTEIN PHOSPHATASE 14 (EC 3.1.3.48) (EC 3.1.3.16) (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 6) (MAP KINASE PHOSPHATASE 6) (MKP-6) [Mus musculus], full insert sequence Length = 1161 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 399 tcaccaagagcctgtttatcagca 422
>gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete sequence Length = 173956 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 attttcattgctctctcact 219 |||||||||||||||||||| Sbjct: 96917 attttcattgctctctcact 96898
>gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, complete sequence Length = 192542 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cctccaggccgatgcttctg 417 |||||||||||||||||||| Sbjct: 20950 cctccaggccgatgcttctg 20931
>gb|AC116340.3| Homo sapiens chromosome 5 clone RP11-118I21, complete sequence Length = 160144 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 ctcagcatagcactgaggaa 552 |||||||||||||||||||| Sbjct: 145799 ctcagcatagcactgaggaa 145818
>ref|NM_173745.4| Mus musculus dual specificity phosphatase 18 (Dusp18), mRNA Length = 4589 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 374 tcaccaagagcctgtttatcagca 397
>gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromosome unknown, complete sequence Length = 184521 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gtaactaatcagaggcagaa 100 |||||||||||||||||||| Sbjct: 87780 gtaactaatcagaggcagaa 87761
>gb|BC079285.1| Rattus norvegicus dual specificity phosphatase 18, mRNA (cDNA clone MGC:94414 IMAGE:7134264), complete cds Length = 1367 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 275 tcaccaagagcctgtttatcagca 298
>gb|AC164107.3| Mus musculus BAC clone RP23-461D6 from chromosome 14, complete sequence Length = 181095 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 agcagccacagataatgcgaacct 176 ||||||||||||||||| |||||| Sbjct: 23334 agcagccacagataatgagaacct 23311
>ref|NM_001013128.1| Rattus norvegicus dual specificity phosphatase 18 (Dusp18), mRNA Length = 1367 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 275 tcaccaagagcctgtttatcagca 298
>gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromosome unknown, complete sequence Length = 207137 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 attcctcttcttcatcagat 317 |||||||||||||||||||| Sbjct: 177383 attcctcttcttcatcagat 177402
>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete sequence Length = 205302 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 attcctcttcttcatcagat 317 |||||||||||||||||||| Sbjct: 54146 attcctcttcttcatcagat 54165
>gb|BC020036.1| Mus musculus dual specificity phosphatase 18, mRNA (cDNA clone MGC:28218 IMAGE:3990751), complete cds Length = 2681 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tcaccaagagcctgtttctcagca 539 ||||||||||||||||| |||||| Sbjct: 409 tcaccaagagcctgtttatcagca 432 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,094,114 Number of Sequences: 3902068 Number of extensions: 5094114 Number of successful extensions: 94059 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93803 Number of HSP's gapped (non-prelim): 256 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)