ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxid... 30 4.3
2GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxid... 30 4.3
3PLA2R_RABIT (P49260) 180 kDa secretory phospholipase A2 receptor... 30 7.4
4TECTA_CHICK (Q9YH85) Alpha-tectorin precursor 29 9.7
5PCCA_CAEBR (Q612F5) Propionyl-CoA carboxylase alpha chain, mitoc... 29 9.7

>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC|
           1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain
           alpha-hydroxy acid oxidase 2)
          Length = 367

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 114 QQLDYAPATISSLEEAQRCT 173
           +QLDY PATIS+LEE  + T
Sbjct: 257 RQLDYVPATISALEEVVKAT 276



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>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC|
           1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain
           alpha-hydroxy acid oxidase 1)
          Length = 367

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 114 QQLDYAPATISSLEEAQRCT 173
           +QLDY PATIS+LEE  + T
Sbjct: 257 RQLDYVPATISALEEVVKAT 276



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>PLA2R_RABIT (P49260) 180 kDa secretory phospholipase A2 receptor precursor|
            (PLA2-R)
          Length = 1458

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 425  HTASESFSEHILERLFVSNRIHAS-RNLLMSRLGNAHWGGL 544
            + A +S   H  E + ++++ H S   +++SRLG+AHW GL
Sbjct: 1134 YAAIKSCQLHGAELVSITDQYHQSFLTVILSRLGHAHWIGL 1174



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>TECTA_CHICK (Q9YH85) Alpha-tectorin precursor|
          Length = 2120

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 132 PATISSLEEAQRCTAPCP 185
           PAT S L    RCTAPCP
Sbjct: 591 PATCSDLTAPLRCTAPCP 608



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>PCCA_CAEBR (Q612F5) Propionyl-CoA carboxylase alpha chain, mitochondrial|
           precursor (EC 6.4.1.3) (PCCase alpha subunit)
           (Propanoyl-CoA:carbon dioxide ligase alpha subunit)
          Length = 738

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 401 QSYRTRGDHTASESFSEHILERLFVSNRIHASRNLLMSRLGNAHWGGLCKLNSPRRKKQV 580
           + YR      AS    + +L   F+ N  H    +L  + GNA W    + +  RR ++V
Sbjct: 240 EGYRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQILCDKHGNALWLNERECSIQRRNQKV 299


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,614,442
Number of Sequences: 219361
Number of extensions: 1754841
Number of successful extensions: 4505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4504
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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