>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                            
Query: 427      cactgcttctgaatctttttctgagcacatcttggaaaggttgtttgtatctaacaggat 486
                |||||| ||||||||| | | ||||||||| |||||||| || || ||||||||||||||
Sbjct: 39604068 cactgcctctgaatctctgtttgagcacatgttggaaagatttttcgtatctaacaggat 39604009

                          
Query: 487      acatgcaagc 496
                || |||||||
Sbjct: 39604008 acctgcaagc 39603999



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                      
Query: 324      tgttcttcaggaactcgacaaa-gaatgatcattgtga 360
                ||||||||| | |||||||||| |||||||||||||||
Sbjct: 39604288 tgttcttcaagtactcgacaaaagaatgatcattgtga 39604251

>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0456E05
          Length = 173699

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 427   cactgcttctgaatctttttctgagcacatcttggaaaggttgtttgtatctaacaggat 486
             |||||| ||||||||| | | ||||||||| |||||||| || || ||||||||||||||
Sbjct: 85024 cactgcctctgaatctctgtttgagcacatgttggaaagatttttcgtatctaacaggat 84965

                       
Query: 487   acatgcaagc 496
             || |||||||
Sbjct: 84964 acctgcaagc 84955



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                   
Query: 324   tgttcttcaggaactcgacaaa-gaatgatcattgtga 360
             ||||||||| | |||||||||| |||||||||||||||
Sbjct: 85244 tgttcttcaagtactcgacaaaagaatgatcattgtga 85207

>ref|XM_463596.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1614

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                  
Query: 324  tgttcttcaggaactcgacaaa-gaatgatcattgtga 360
            ||||||||| | |||||||||| |||||||||||||||
Sbjct: 1402 tgttcttcaagtactcgacaaaagaatgatcattgtga 1365

>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence
          Length = 208880

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 453    acatcttggaaaggttgtttgt 474
              ||||||||||||||||||||||
Sbjct: 185804 acatcttggaaaggttgtttgt 185783

>gb|AC122232.3| Mus musculus BAC clone RP23-136G1 from chromosome 7, complete sequence
          Length = 182272

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 453   acatcttggaaaggttgtttgt 474
             ||||||||||||||||||||||
Sbjct: 45713 acatcttggaaaggttgtttgt 45692

>gb|AC105416.3| Homo sapiens BAC clone RP11-310A13 from 4, complete sequence
          Length = 123331

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 430    tgcttctgaatctttttctgag 451
              ||||||||||||||||||||||
Sbjct: 105109 tgcttctgaatctttttctgag 105088

>gb|AC154832.2| Mus musculus BAC clone RP24-568D4 from chromosome 14, complete sequence
          Length = 134900

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 589   aggtagatgttgtaatcatata 610
             ||||||||||||||||||||||
Sbjct: 58049 aggtagatgttgtaatcatata 58028

>emb|AL122016.15|HSJ161C16 Human DNA sequence from clone RP1-161C16 on chromosome 6q14.2-15
             Contains a ribosomal protein L31 (RPL31) pseudogene,
             complete sequence
          Length = 111453

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   ggactacgcgcccgccaccat 142
             |||||||||||||||||||||
Sbjct: 22450 ggactacgcgcccgccaccat 22430

>gb|AC093576.3| Homo sapiens chromosome 1 clone RP11-359C24, complete sequence
          Length = 185461

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   ttgtttgtatctaacaggata 487
             |||||||||||||||||||||
Sbjct: 36538 ttgtttgtatctaacaggata 36558

>gb|AC131244.2| Ciona savignyi, clone XX-4448557J23, complete sequence
          Length = 43713

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 590   ggtagatgttgtaatcatat 609
             ||||||||||||||||||||
Sbjct: 30465 ggtagatgttgtaatcatat 30446

>gb|AC163104.2| Mus musculus BAC clone RP23-332A4 from chromosome 6, complete sequence
          Length = 195179

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    ggaaccattgctccagcagc 120
              ||||||||||||||||||||
Sbjct: 185417 ggaaccattgctccagcagc 185398

>ref|XM_458388.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C17358g)
           partial mRNA
          Length = 672

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 aaagaatgatcattgtgagt 362
           ||||||||||||||||||||
Sbjct: 240 aaagaatgatcattgtgagt 259

>gb|AC127311.3| Mus musculus BAC clone RP23-301C7 from 6, complete sequence
          Length = 224182

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ggaaccattgctccagcagc 120
              ||||||||||||||||||||
Sbjct: 120734 ggaaccattgctccagcagc 120753

>gb|BC061852.1| Rattus norvegicus cDNA clone IMAGE:5621842, partial cds
          Length = 1713

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 429 ctgcttctgaatctttttct 448
           ||||||||||||||||||||
Sbjct: 708 ctgcttctgaatctttttct 727

>emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromosome Xq21, complete
             sequence
          Length = 129249

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   catcaatttttgaaataatt 385
             ||||||||||||||||||||
Sbjct: 58642 catcaatttttgaaataatt 58661

>emb|AL442067.16| Human DNA sequence from clone RP11-128N14 on chromosome 13 Contains the
              3' end of the gene for muscleblind-like protein (MBLL39),
              the RAP2A gene for a member of the RAS oncogene family and
              a CpG island, complete sequence
          Length = 150297

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 388    tgtgtcttatgttcagagct 407
              ||||||||||||||||||||
Sbjct: 108944 tgtgtcttatgttcagagct 108963

>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
               hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     aaagaatgatcattgtgagt 362
               ||||||||||||||||||||
Sbjct: 1427007 aaagaatgatcattgtgagt 1427026

>gb|AC154397.8| Mus musculus chromosome 7, clone RP23-53N23, complete sequence
          Length = 273314

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 494   agcagaaatttacttatgtccagg 517
             |||| |||||||||||||||||||
Sbjct: 89283 agcaaaaatttacttatgtccagg 89306

>emb|AL645970.15| Mouse DNA sequence from clone DN-258M5 on chromosome 3, complete
             sequence
          Length = 141160

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   actgcttctgaatctttttc 447
             ||||||||||||||||||||
Sbjct: 64065 actgcttctgaatctttttc 64084

>gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete sequence
          Length = 237678

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    caggatacatgcaagcagaa 500
              ||||||||||||||||||||
Sbjct: 116568 caggatacatgcaagcagaa 116549

>gb|AC019102.13| Homo sapiens BAC clone RP11-457A20 from 2, complete sequence
          Length = 158242

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 598   ttgtaatcatataaatcctt 617
             ||||||||||||||||||||
Sbjct: 93089 ttgtaatcatataaatcctt 93070

>ref|NM_031626.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 2
           (Nr1h2), mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 429 ctgcttctgaatctttttct 448
           ||||||||||||||||||||
Sbjct: 738 ctgcttctgaatctttttct 719

>dbj|AK183688.1| Mus musculus cDNA, clone:Y0G0126M14, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000055513, based on BLAT search
          Length = 219

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 aaccattgctccagcagctg 122
           ||||||||||||||||||||
Sbjct: 169 aaccattgctccagcagctg 188

>emb|AL806520.36| Mouse DNA sequence from clone RP23-19M23 on chromosome X, complete
             sequence
          Length = 190804

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ctataggtgttcttcaggaa 336
             ||||||||||||||||||||
Sbjct: 31754 ctataggtgttcttcaggaa 31773

>emb|Z84816.1|HS2A2B Human DNA sequence from PAC 2A2 on chromosome X contains ESTs
          Length = 96355

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   catcaatttttgaaataatt 385
             ||||||||||||||||||||
Sbjct: 37714 catcaatttttgaaataatt 37695

>emb|BX927343.16| Zebrafish DNA sequence from clone CH211-57L21 in linkage group 16,
             complete sequence
          Length = 166820

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 585   tataaggtagatgttgtaat 604
             ||||||||||||||||||||
Sbjct: 15534 tataaggtagatgttgtaat 15553

>gb|AC118223.11| Mus musculus chromosome 7, clone RP23-337G6, complete sequence
          Length = 196119

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 494    agcagaaatttacttatgtccagg 517
              |||| |||||||||||||||||||
Sbjct: 139749 agcaaaaatttacttatgtccagg 139772

>gb|AC003112.1|AC003112 Human DNA from chromosome 19 specific cosmid R30292, genomic sequence,
             complete sequence
          Length = 40668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   ggactacgcgcccgccacca 141
             ||||||||||||||||||||
Sbjct: 22151 ggactacgcgcccgccacca 22170

>gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear receptor OR-1 mRNA, complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 429 ctgcttctgaatctttttct 448
           ||||||||||||||||||||
Sbjct: 682 ctgcttctgaatctttttct 663

>gb|M33198.1|HUMIL2A2 Human interleukin 2 (IL-2) gene, 3' flank
          Length = 569

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 ggactacgcgcccgccacca 141
           ||||||||||||||||||||
Sbjct: 226 ggactacgcgcccgccacca 207

>gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA, complete cds
          Length = 1959

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 429 ctgcttctgaatctttttct 448
           ||||||||||||||||||||
Sbjct: 738 ctgcttctgaatctttttct 719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,706,498
Number of Sequences: 3902068
Number of extensions: 5706498
Number of successful extensions: 121730
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121625
Number of HSP's gapped (non-prelim): 107
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)