ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23p21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474215.1| Oryza sativa (japonica cultivar-group), predic... 224 3e-55
2dbj|AK103942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
3dbj|AK070723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
4ref|XM_465987.1| Oryza sativa (japonica cultivar-group), mRNA 184 2e-43
5dbj|AK072024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
6dbj|AK064445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
8dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
9emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4,... 123 7e-25
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
11gb|AY110119.1| Zea mays CL23324_1 mRNA sequence 92 3e-15
12gb|AY098525.1| Ananas comosus putative ATP/GTP binding protein m... 62 2e-06
13emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chro... 46 0.14
14gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, comple... 44 0.54
15gb|AC140782.4| Mus musculus BAC clone RP24-417N13 from chromosom... 44 0.54
16gb|AC025778.8| Homo sapiens chromosome 16 clone CTD-2504F3, comp... 44 0.54
17gb|AC003026.1|HUAC003026 Human Chromosome 16 BAC clone CIT987SK-... 44 0.54
18emb|AL034404.1|HS417C12 Human DNA sequence from clone RP3-417C12... 44 0.54
19gb|AC136624.3| Homo sapiens chromosome 16 clone RP11-517A5, comp... 44 0.54
20gb|AC165080.4| Mus musculus BAC clone RP24-93F20 from chromosome... 42 2.1
21gb|AC079763.7| Homo sapiens BAC clone RP11-153N17 from 7, comple... 42 2.1
22gb|AC141325.1| Pan troglodytes BAC clone RP43-168D7 from 7, comp... 42 2.1
23gb|AC016885.16| Homo sapiens chromosome 8, clone RP11-388K12, co... 42 2.1
24dbj|AB077117.1| Prunus persica mRNA, microsatellite marker M15a 42 2.1
25gb|AC007938.1|AC007938 Homo sapiens clone RP11-2E11 from 7q31, c... 42 2.1
26gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq... 42 2.1
27gb|AC164092.3| Mus musculus BAC clone RP23-366E4 from chromosome... 42 2.1
28emb|AL928846.4| Human DNA sequence from clone RP11-9I7 on chromo... 42 2.1
29ref|NM_123181.3| Arabidopsis thaliana unknown protein AT5G38200 ... 40 8.4
30gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete... 40 8.4
31gb|AC154051.2| Drosophila melanogaster clone BACR17E02, complete... 40 8.4
32gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, com... 40 8.4
33emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, comple... 40 8.4
34gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clon... 40 8.4
35gb|AC130313.3| Homo sapiens chromosome 8, clone RP11-460A11, com... 40 8.4
36gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Can... 40 8.4
37gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, compl... 40 8.4
38gb|S82464.1| vacuolar H(+)-ATPase subunit=13.7 kda F-ATPases sub... 40 8.4
39gb|BC110010.1| Bos taurus ATPase, H+ transporting, lysosomal (va... 40 8.4
40gb|AC010350.5|AC010350 Homo sapiens chromosome 5 clone CTD-2020P... 40 8.4
41emb|BX470076.3| Zebrafish DNA sequence from clone DKEY-103E21 in... 40 8.4
42gb|AC068712.6|AC068712 Homo sapiens chromosome 15 clone CTD-3203... 40 8.4
43ref|NM_174245.2| Bos taurus ATPase, H+ transporting, lysosomal (... 40 8.4
44gb|AC011198.2|AC011198 Homo sapiens chromosome 8 clone RP11-18K2... 40 8.4
45gb|AC044791.6|AC044791 Homo sapiens chromosome 15 clone RP11-209... 40 8.4
46gb|AC016254.14|AC016254 Homo sapiens 12 BAC RP11-394C19 (Roswell... 40 8.4
47gb|AC068570.23| Homo sapiens chromosome 8, clone RP11-126N1, com... 40 8.4
48dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 8.4
49dbj|BS000120.2| Pan troglodytes chromosome 22 clone:RP43-007D11,... 40 8.4
50dbj|AB005247.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.4
51dbj|AK130314.1| Homo sapiens cDNA FLJ26804 fis, clone PRS05848 40 8.4
52gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 ... 40 8.4
53dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.4
54dbj|AP001429.2| Homo sapiens genomic DNA, chromosome 21q22.2, cl... 40 8.4
55gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 8.4
56dbj|AP000150.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 8.4
57dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 8.4
58dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 c... 40 8.4
59emb|AL732545.10| Mouse DNA sequence from clone RP23-258D11 on ch... 40 8.4 
>ref|XM_474215.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score =  224 bits (113), Expect = 3e-55
 Identities = 191/217 (88%)
 Strand = Plus / Minus

                                                                        
Query: 398  tatctattaatgtacttcgcctgtacttggctcacatcaggagtgtcatcggtttttaca 457
            |||||||| |||||||| |||| ||| | ||| |||||||| |||||    |||||||||
Sbjct: 1013 tatctattgatgtactttgcctttacgttgcttacatcaggggtgtctggagtttttaca 954

                                                                        
Query: 458  ggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttggatccatatca 517
            |||||||||||||||||   |||||||| |||||||||||| | ||| || |||||||||
Sbjct: 953  ggataaaatttgtaaaatttgatattttcaaatgcctctttgaccttagggtccatatca 894

                                                                        
Query: 518  tcaatagctttctttctggcttctttagcctgcttcagctctctcttcctttctctaacc 577
            ||||||||||||||||| ||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 893  tcaatagctttctttcttgcttccttagcctgttttagctctcttttcctttctctaacc 834

                                                 
Query: 578  ctctcctttatgaagtccttaaatttgtctttctcat 614
            |||||||||||||| ||||||||||| ||||||||||
Sbjct: 833  ctctcctttatgaattccttaaatttttctttctcat 797
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>dbj|AK103942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G11, full
            insert sequence
          Length = 1469

 Score =  224 bits (113), Expect = 3e-55
 Identities = 191/217 (88%)
 Strand = Plus / Minus

                                                                        
Query: 398  tatctattaatgtacttcgcctgtacttggctcacatcaggagtgtcatcggtttttaca 457
            |||||||| |||||||| |||| ||| | ||| |||||||| |||||    |||||||||
Sbjct: 1088 tatctattgatgtactttgcctttacgttgcttacatcaggggtgtctggagtttttaca 1029

                                                                        
Query: 458  ggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttggatccatatca 517
            |||||||||||||||||   |||||||| |||||||||||| | ||| || |||||||||
Sbjct: 1028 ggataaaatttgtaaaatttgatattttcaaatgcctctttgaccttagggtccatatca 969

                                                                        
Query: 518  tcaatagctttctttctggcttctttagcctgcttcagctctctcttcctttctctaacc 577
            ||||||||||||||||| ||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 968  tcaatagctttctttcttgcttccttagcctgttttagctctcttttcctttctctaacc 909

                                                 
Query: 578  ctctcctttatgaagtccttaaatttgtctttctcat 614
            |||||||||||||| ||||||||||| ||||||||||
Sbjct: 908  ctctcctttatgaattccttaaatttttctttctcat 872
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>dbj|AK070723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059N04, full
            insert sequence
          Length = 1509

 Score =  224 bits (113), Expect = 3e-55
 Identities = 191/217 (88%)
 Strand = Plus / Minus

                                                                        
Query: 398  tatctattaatgtacttcgcctgtacttggctcacatcaggagtgtcatcggtttttaca 457
            |||||||| |||||||| |||| ||| | ||| |||||||| |||||    |||||||||
Sbjct: 1175 tatctattgatgtactttgcctttacgttgcttacatcaggggtgtctggagtttttaca 1116

                                                                        
Query: 458  ggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttggatccatatca 517
            |||||||||||||||||   |||||||| |||||||||||| | ||| || |||||||||
Sbjct: 1115 ggataaaatttgtaaaatttgatattttcaaatgcctctttgaccttagggtccatatca 1056

                                                                        
Query: 518  tcaatagctttctttctggcttctttagcctgcttcagctctctcttcctttctctaacc 577
            ||||||||||||||||| ||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 1055 tcaatagctttctttcttgcttccttagcctgttttagctctcttttcctttctctaacc 996

                                                 
Query: 578  ctctcctttatgaagtccttaaatttgtctttctcat 614
            |||||||||||||| ||||||||||| ||||||||||
Sbjct: 995  ctctcctttatgaattccttaaatttttctttctcat 959
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>ref|XM_465987.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1729

 Score =  184 bits (93), Expect = 2e-43
 Identities = 186/217 (85%)
 Strand = Plus / Minus

                                                                        
Query: 398  tatctattaatgtacttcgcctgtacttggctcacatcaggagtgtcatcggtttttaca 457
            |||||||| |||||| | |||| ||| | ||| ||||||||||| ||    |||||||||
Sbjct: 1015 tatctattgatgtaccttgcctttacgttgcttacatcaggagtatctagagtttttaca 956

                                                                        
Query: 458  ggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttggatccatatca 517
            |||||||||||||||||  ||||||||| |||||||||||| | ||| ||||||||||||
Sbjct: 955  ggataaaatttgtaaaattggatattttcaaatgcctctttgatcttaggatccatatca 896

                                                                        
Query: 518  tcaatagctttctttctggcttctttagcctgcttcagctctctcttcctttctctaacc 577
            ||||||||||||||||| ||||| |||||||| ||||||||||| || || |||||||||
Sbjct: 895  tcaatagctttctttctagcttccttagcctgtttcagctctctttttctctctctaacc 836

                                                 
Query: 578  ctctcctttatgaagtccttaaatttgtctttctcat 614
             ||||||||| ||| ||||| | ||| ||| ||||||
Sbjct: 835  ttctcctttaggaattccttcattttttctctctcat 799
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>dbj|AK072024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100E02, full
            insert sequence
          Length = 1830

 Score =  184 bits (93), Expect = 2e-43
 Identities = 186/217 (85%)
 Strand = Plus / Minus

                                                                        
Query: 398  tatctattaatgtacttcgcctgtacttggctcacatcaggagtgtcatcggtttttaca 457
            |||||||| |||||| | |||| ||| | ||| ||||||||||| ||    |||||||||
Sbjct: 1169 tatctattgatgtaccttgcctttacgttgcttacatcaggagtatctagagtttttaca 1110

                                                                        
Query: 458  ggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttggatccatatca 517
            |||||||||||||||||  ||||||||| |||||||||||| | ||| ||||||||||||
Sbjct: 1109 ggataaaatttgtaaaattggatattttcaaatgcctctttgatcttaggatccatatca 1050

                                                                        
Query: 518  tcaatagctttctttctggcttctttagcctgcttcagctctctcttcctttctctaacc 577
            ||||||||||||||||| ||||| |||||||| ||||||||||| || || |||||||||
Sbjct: 1049 tcaatagctttctttctagcttccttagcctgtttcagctctctttttctctctctaacc 990

                                                 
Query: 578  ctctcctttatgaagtccttaaatttgtctttctcat 614
             ||||||||| ||| ||||| | ||| ||| ||||||
Sbjct: 989  ttctcctttaggaattccttcattttttctctctcat 953
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>dbj|AK064445.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-E12, full
            insert sequence
          Length = 1729

 Score =  184 bits (93), Expect = 2e-43
 Identities = 186/217 (85%)
 Strand = Plus / Minus

                                                                        
Query: 398  tatctattaatgtacttcgcctgtacttggctcacatcaggagtgtcatcggtttttaca 457
            |||||||| |||||| | |||| ||| | ||| ||||||||||| ||    |||||||||
Sbjct: 1015 tatctattgatgtaccttgcctttacgttgcttacatcaggagtatctagagtttttaca 956

                                                                        
Query: 458  ggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttggatccatatca 517
            |||||||||||||||||  ||||||||| |||||||||||| | ||| ||||||||||||
Sbjct: 955  ggataaaatttgtaaaattggatattttcaaatgcctctttgatcttaggatccatatca 896

                                                                        
Query: 518  tcaatagctttctttctggcttctttagcctgcttcagctctctcttcctttctctaacc 577
            ||||||||||||||||| ||||| |||||||| ||||||||||| || || |||||||||
Sbjct: 895  tcaatagctttctttctagcttccttagcctgtttcagctctctttttctctctctaacc 836

                                                 
Query: 578  ctctcctttatgaagtccttaaatttgtctttctcat 614
             ||||||||| ||| ||||| | ||| ||| ||||||
Sbjct: 835  ttctcctttaggaattccttcattttttctctctcat 799
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  139 bits (70), Expect = 1e-29
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                            
Query: 449      gtttttacaggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttgga 508
                ||||||||||||||||||||||||||  ||||||||| |||||||||||| | ||| |||
Sbjct: 18910185 gtttttacaggataaaatttgtaaaattggatattttcaaatgcctctttgatcttagga 18910244

                                                          
Query: 509      tccatatcatcaatagctttctttctggcttctttagcctgc 550
                |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 18910245 tccatatcatcaatagctttctttctagcttccttagcctgc 18910286



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 546      cctgcttcagctctctcttcctttctctaaccctctcctttatgaagtcct 596
                |||| ||||||||||| || || ||||||||| ||||||||| ||| ||||
Sbjct: 18910372 cctgtttcagctctctttttctctctctaaccttctcctttaggaattcct 18910422
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>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461D06
          Length = 112895

 Score =  139 bits (70), Expect = 1e-29
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                         
Query: 449   gtttttacaggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttgga 508
             ||||||||||||||||||||||||||  ||||||||| |||||||||||| | ||| |||
Sbjct: 73718 gtttttacaggataaaatttgtaaaattggatattttcaaatgcctctttgatcttagga 73777

                                                       
Query: 509   tccatatcatcaatagctttctttctggcttctttagcctgc 550
             |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 73778 tccatatcatcaatagctttctttctagcttccttagcctgc 73819



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 546   cctgcttcagctctctcttcctttctctaaccctctcctttatgaagtcct 596
             |||| ||||||||||| || || ||||||||| ||||||||| ||| ||||
Sbjct: 73905 cctgtttcagctctctttttctctctctaaccttctcctttaggaattcct 73955
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>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
              complete sequence
          Length = 153623

 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                          
Query: 449    gtttttacaggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttgga 508
              ||||||||||||||||||||||||||   |||||||| |||||||||||| | ||| || 
Sbjct: 125168 gtttttacaggataaaatttgtaaaatttgatattttcaaatgcctctttgaccttaggg 125227

                                                        
Query: 509    tccatatcatcaatagctttctttctggcttctttagcctgc 550
              |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 125228 tccatatcatcaatagctttctttcttgcttccttagcctgc 125269



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                         
Query: 554    agctctctcttcctttctctaaccctctcctttatgaagtcct 596
              |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 125357 agctctcttttcctttctctaaccctctcctttatgaattcct 125399
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  123 bits (62), Expect = 7e-25
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                            
Query: 449      gtttttacaggataaaatttgtaaaaccggatattttgaaatgcctctttcaactttgga 508
                ||||||||||||||||||||||||||   |||||||| |||||||||||| | ||| || 
Sbjct: 33774725 gtttttacaggataaaatttgtaaaatttgatattttcaaatgcctctttgaccttaggg 33774784

                                                          
Query: 509      tccatatcatcaatagctttctttctggcttctttagcctgc 550
                |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 33774785 tccatatcatcaatagctttctttcttgcttccttagcctgc 33774826



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                           
Query: 554      agctctctcttcctttctctaaccctctcctttatgaagtcct 596
                |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 33774914 agctctcttttcctttctctaaccctctcctttatgaattcct 33774956
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>gb|AY110119.1| Zea mays CL23324_1 mRNA sequence
          Length = 1433

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                        
Query: 488  aatgcctctttcaactttggatccatatcatcaatagctttctttctggcttctttagcc 547
            ||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1071 aatgcctctttcaccttaggatccatatcatcaatagctttcctcctggcttctttagcc 1012

              
Query: 548  tg 549
            ||
Sbjct: 1011 tg 1010
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>gb|AY098525.1| Ananas comosus putative ATP/GTP binding protein mRNA, complete cds
          Length = 1606

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 502  ctttggatccatatcatcaatagctttctttctggcttctttagcctgctt 552
            ||||||||||||||| |||||||||||  | ||||||||| ||||||||||
Sbjct: 1099 ctttggatccatatcttcaatagcttttctcctggcttctctagcctgctt 1049
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>emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chromosome 14, complete
             sequence
          Length = 200375

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 550   cttcagctctctcttcctttctctaac 576
             |||||||||| ||||||||||||||||
Sbjct: 55005 cttcagctctttcttcctttctctaac 54979
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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 552    tcagctctctcttcctttctct 573
              ||||||||||||||||||||||
Sbjct: 201760 tcagctctctcttcctttctct 201739
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>gb|AC140782.4| Mus musculus BAC clone RP24-417N13 from chromosome 7, complete
            sequence
          Length = 196282

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 552  tcagctctctcttcctttctct 573
            ||||||||||||||||||||||
Sbjct: 3754 tcagctctctcttcctttctct 3733
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>gb|AC025778.8| Homo sapiens chromosome 16 clone CTD-2504F3, complete sequence
          Length = 208417

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 48    gaaagggaacaaactgttccta 69
             ||||||||||||||||||||||
Sbjct: 96772 gaaagggaacaaactgttccta 96793
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>gb|AC003026.1|HUAC003026 Human Chromosome 16 BAC clone CIT987SK-118F2, complete sequence
          Length = 68355

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 48    gaaagggaacaaactgttccta 69
             ||||||||||||||||||||||
Sbjct: 37976 gaaagggaacaaactgttccta 37955
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>emb|AL034404.1|HS417C12 Human DNA sequence from clone RP3-417C12 on chromosome Xp22.11-22.2,
            complete sequence
          Length = 11663

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 560  ctcttcctttctctaaccctct 581
            ||||||||||||||||||||||
Sbjct: 5413 ctcttcctttctctaaccctct 5392
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>gb|AC136624.3| Homo sapiens chromosome 16 clone RP11-517A5, complete sequence
          Length = 211896

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 48     gaaagggaacaaactgttccta 69
              ||||||||||||||||||||||
Sbjct: 209122 gaaagggaacaaactgttccta 209143
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>gb|AC165080.4| Mus musculus BAC clone RP24-93F20 from chromosome 9, complete sequence
          Length = 194427

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 553   cagctctctcttcctttctct 573
             |||||||||||||||||||||
Sbjct: 58767 cagctctctcttcctttctct 58787
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>gb|AC079763.7| Homo sapiens BAC clone RP11-153N17 from 7, complete sequence
          Length = 157848

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    aaatgggtgaaagaaactgta 200
              |||||||||||||||||||||
Sbjct: 131440 aaatgggtgaaagaaactgta 131420
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>gb|AC141325.1| Pan troglodytes BAC clone RP43-168D7 from 7, complete sequence
          Length = 195031

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   ccaaaggaagagattactcag 177
             |||||||||||||||||||||
Sbjct: 81440 ccaaaggaagagattactcag 81420
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>gb|AC016885.16| Homo sapiens chromosome 8, clone RP11-388K12, complete sequence
          Length = 210008

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 585    ttatgaagtccttaaatttgt 605
              |||||||||||||||||||||
Sbjct: 184574 ttatgaagtccttaaatttgt 184554
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>dbj|AB077117.1| Prunus persica mRNA, microsatellite marker M15a
          Length = 862

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 551 ttcagctctctcttcctttct 571
           |||||||||||||||||||||
Sbjct: 165 ttcagctctctcttcctttct 185
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>gb|AC007938.1|AC007938 Homo sapiens clone RP11-2E11 from 7q31, complete sequence
          Length = 167237

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   ccaaaggaagagattactcag 177
             |||||||||||||||||||||
Sbjct: 48217 ccaaaggaagagattactcag 48237
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>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence
          Length = 1332022

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 512     atatcatcaatagctttcttt 532
               |||||||||||||||||||||
Sbjct: 1070843 atatcatcaatagctttcttt 1070863
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>gb|AC164092.3| Mus musculus BAC clone RP23-366E4 from chromosome 9, complete sequence
          Length = 203636

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 553    cagctctctcttcctttctct 573
              |||||||||||||||||||||
Sbjct: 187593 cagctctctcttcctttctct 187613
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>emb|AL928846.4| Human DNA sequence from clone RP11-9I7 on chromosome 9, complete
             sequence
          Length = 146621

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 585   ttatgaagtccttaaatttgt 605
             |||||||||||||||||||||
Sbjct: 54336 ttatgaagtccttaaatttgt 54356
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>ref|NM_123181.3| Arabidopsis thaliana unknown protein AT5G38200 mRNA, complete cds
          Length = 1699

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 ttcaactttggatccatatc 516
           ||||||||||||||||||||
Sbjct: 139 ttcaactttggatccatatc 120
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>gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete sequence
          Length = 186002

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 553    cagctctctcttcctttctc 572
              ||||||||||||||||||||
Sbjct: 157732 cagctctctcttcctttctc 157751
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>gb|AC154051.2| Drosophila melanogaster clone BACR17E02, complete sequence
          Length = 168158

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   cagctctctcttcctttctc 572
             ||||||||||||||||||||
Sbjct: 86328 cagctctctcttcctttctc 86347
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>gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, complete sequence
          Length = 167235

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   tttcaactttggatccatat 515
             ||||||||||||||||||||
Sbjct: 46248 tttcaactttggatccatat 46229
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>emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, complete sequence
          Length = 39483

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   aaagaaactgtactacaata 208
             ||||||||||||||||||||
Sbjct: 33647 aaagaaactgtactacaata 33628
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>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete
             sequence
          Length = 106476

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 511   catatcatcaatagctttctttctggcttctttagcctgc 550
             |||||| |||||||||||| |||  |||||| ||||||||
Sbjct: 16435 catatcttcaatagctttccttcgagcttctctagcctgc 16396
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>gb|AC130313.3| Homo sapiens chromosome 8, clone RP11-460A11, complete sequence
          Length = 148476

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 556   ctctctcttcctttctctaaccctctcc 583
             ||||||||||||||||||  ||||||||
Sbjct: 24438 ctctctcttcctttctctttccctctcc 24411
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>gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 223675

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    gcaacaaagctatccattgg 238
              ||||||||||||||||||||
Sbjct: 219117 gcaacaaagctatccattgg 219136
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>gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, complete sequence
          Length = 133668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 579    tctcctttatgaagtcctta 598
              ||||||||||||||||||||
Sbjct: 132826 tctcctttatgaagtcctta 132807
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>gb|S82464.1| vacuolar H(+)-ATPase subunit=13.7 kda F-ATPases subunit b homolog
           [cattle, adrenal medulla, chromaffin granules, mRNA,
           1050 nt]
          Length = 1050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 537 cttctttagcctgcttcagc 556
           ||||||||||||||||||||
Sbjct: 261 cttctttagcctgcttcagc 242
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>gb|BC110010.1| Bos taurus ATPase, H+ transporting, lysosomal (vacuolar proton
           pump), member J, mRNA (cDNA clone MGC:133844
           IMAGE:8043047), complete cds
          Length = 1122

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 537 cttctttagcctgcttcagc 556
           ||||||||||||||||||||
Sbjct: 217 cttctttagcctgcttcagc 198
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>gb|AC010350.5|AC010350 Homo sapiens chromosome 5 clone CTD-2020P22, complete sequence
          Length = 92725

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   tctcctttatgaagtcctta 598
             ||||||||||||||||||||
Sbjct: 78131 tctcctttatgaagtcctta 78150
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>emb|BX470076.3| Zebrafish DNA sequence from clone DKEY-103E21 in linkage group 5,
             complete sequence
          Length = 112637

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   tacaggataaaatttgtaaa 473
             ||||||||||||||||||||
Sbjct: 39648 tacaggataaaatttgtaaa 39629
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>gb|AC068712.6|AC068712 Homo sapiens chromosome 15 clone CTD-3203H14 map 15q21.3, complete
            sequence
          Length = 176645

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 522  tagctttctttctggcttct 541
            ||||||||||||||||||||
Sbjct: 2695 tagctttctttctggcttct 2714
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>ref|NM_174245.2| Bos taurus ATPase, H+ transporting, lysosomal (vacuolar proton
           pump), member J (ATP6J), mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 537 cttctttagcctgcttcagc 556
           ||||||||||||||||||||
Sbjct: 261 cttctttagcctgcttcagc 242
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>gb|AC011198.2|AC011198 Homo sapiens chromosome 8 clone RP11-18K20, complete sequence
          Length = 191233

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 556    ctctctcttcctttctctaaccctctcc 583
              ||||||||||||||||||  ||||||||
Sbjct: 149263 ctctctcttcctttctctttccctctcc 149290
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>gb|AC044791.6|AC044791 Homo sapiens chromosome 15 clone RP11-209E8 map 15q21, complete
             sequence
          Length = 171245

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   tagctttctttctggcttct 541
             ||||||||||||||||||||
Sbjct: 44744 tagctttctttctggcttct 44763
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>gb|AC016254.14|AC016254 Homo sapiens 12 BAC RP11-394C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 164331

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcaacaaagctatccattgg 238
             ||||||||||||||||||||
Sbjct: 22778 gcaacaaagctatccattgg 22797
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>gb|AC068570.23| Homo sapiens chromosome 8, clone RP11-126N1, complete sequence
          Length = 148783

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 556  ctctctcttcctttctctaaccctctcc 583
            ||||||||||||||||||  ||||||||
Sbjct: 4211 ctctctcttcctttctctttccctctcc 4238
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   atggcggtagtatctattaa 407
             ||||||||||||||||||||
Sbjct: 67730 atggcggtagtatctattaa 67711
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>dbj|BS000120.2| Pan troglodytes chromosome 22 clone:RP43-007D11, map 22, complete
              sequences
          Length = 219802

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    actacaatagagttcagagg 219
              ||||||||||||||||||||
Sbjct: 124641 actacaatagagttcagagg 124622
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>dbj|AB005247.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXA21
          Length = 87841

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   ttcaactttggatccatatc 516
             ||||||||||||||||||||
Sbjct: 44011 ttcaactttggatccatatc 43992
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>dbj|AK130314.1| Homo sapiens cDNA FLJ26804 fis, clone PRS05848
          Length = 2814

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  gcaacaaagctatccattgg 238
            ||||||||||||||||||||
Sbjct: 1351 gcaacaaagctatccattgg 1370
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>gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 of 74 of the complete
             sequence
          Length = 203546

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   cagctctctcttcctttctc 572
             ||||||||||||||||||||
Sbjct: 32613 cagctctctcttcctttctc 32594
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>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   actacaatagagttcagagg 219
             ||||||||||||||||||||
Sbjct: 20937 actacaatagagttcagagg 20918
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>dbj|AP001429.2| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T1212, LB7T-ERG
             region, complete sequences
          Length = 85691

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   actacaatagagttcagagg 219
             ||||||||||||||||||||
Sbjct: 72394 actacaatagagttcagagg 72375
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 445     atcggtttttacaggataaa 464
               ||||||||||||||||||||
Sbjct: 2162122 atcggtttttacaggataaa 2162141
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>dbj|AP000150.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 2/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   actacaatagagttcagagg 219
             ||||||||||||||||||||
Sbjct: 90354 actacaatagagttcagagg 90335
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>dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 2/13
          Length = 152345

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   actacaatagagttcagagg 219
             ||||||||||||||||||||
Sbjct: 90354 actacaatagagttcagagg 90335
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>dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 clone: T1212 and
             T1601, complete sequence
          Length = 110174

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   actacaatagagttcagagg 219
             ||||||||||||||||||||
Sbjct: 72390 actacaatagagttcagagg 72371
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>emb|AL732545.10| Mouse DNA sequence from clone RP23-258D11 on chromosome 4, complete
            sequence
          Length = 116754

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  ctggcttctttagcctgctt 552
            ||||||||||||||||||||
Sbjct: 8828 ctggcttctttagcctgctt 8847


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,337,281
Number of Sequences: 3902068
Number of extensions: 6337281
Number of successful extensions: 133847
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133583
Number of HSP's gapped (non-prelim): 261
length of query: 614
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 591
effective length of database: 17,143,297,704
effective search space: 10131688943064
effective search space used: 10131688943064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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