>RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1)|
          Length = 408

 Score =  147 bits (372), Expect = 2e-35
 Identities = 74/107 (69%), Positives = 87/107 (81%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           +INSDEVQSVV PI +  KR   +KNPL+    +LKLNPY  TARRM++LAEA RVKA+K
Sbjct: 300 IINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKK 359

Query: 408 DKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEFDVFSKWLGV 268
           +K++ KR  +S EEAS IKAAGKAWYQTMISDSDYTEFD F+KWLGV
Sbjct: 360 EKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGV 406

>RL4B_ARATH (Q9SF40) 60S ribosomal protein L4-2 (L1)|
          Length = 406

 Score =  145 bits (365), Expect = 1e-34
 Identities = 70/106 (66%), Positives = 86/106 (81%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           +INSDE+QSVV PI K+ KR   +KNPLKN   +LKLNPY  TA+RM++LAEA RVKA+K
Sbjct: 298 IINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKK 357

Query: 408 DKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEFDVFSKWLG 271
           +K+  KR  ++ EEA  IKAAGK+WY+TMISDSDYTEFD F+KWLG
Sbjct: 358 EKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLG 403

>RL4A_ARATH (P49691) 60S ribosomal protein L4-1 (L1)|
          Length = 407

 Score =  144 bits (362), Expect = 2e-34
 Identities = 71/106 (66%), Positives = 84/106 (79%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           +INSDEVQSVV PI    KR   +KNPLKN   + KLNPY  TA+RM++LAEA+RVKA+K
Sbjct: 299 IINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKK 358

Query: 408 DKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEFDVFSKWLG 271
           +K+  KR  ++ EEA  IKAAGKAWYQTMISDSDYTEFD F+KWLG
Sbjct: 359 EKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLG 404

>RL4B_XENLA (P02385) 60S ribosomal protein L4-B (L1B) (Fragment)|
          Length = 396

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 32/79 (40%), Positives = 50/79 (63%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           ++ S E+Q  ++  NK+VKRRE +KNPLKN   +++LNPY  TARR A+L +   +KA++
Sbjct: 291 ILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKE 350

Query: 408 DKINSKRTKLSAEEASKIK 352
            K +  + K      +K K
Sbjct: 351 KKPDDGKPKAKKPLDAKTK 369

>RL4A_XENLA (P08429) 60S ribosomal protein L4-A (L1A)|
          Length = 396

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 32/79 (40%), Positives = 50/79 (63%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           ++ S E+Q  ++  NK+VKRRE +KNPLKN   +++LNPY  TARR A+L +   +KA++
Sbjct: 296 ILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKE 355

Query: 408 DKINSKRTKLSAEEASKIK 352
            K +  + K      +K K
Sbjct: 356 KKPDDGKPKAKKPLDAKTK 374

>RL4_HUMAN (P36578) 60S ribosomal protein L4 (L1)|
          Length = 426

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 33/83 (39%), Positives = 46/83 (55%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           ++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY  T RR  +L +A   K R 
Sbjct: 291 ILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRV 350

Query: 408 DKINSKRTKLSAEEASKIKAAGK 340
           DK  +    L A+   K   AGK
Sbjct: 351 DKAAAAAAALQAKSDEKAAVAGK 373

>RL4_MOUSE (Q9D8E6) 60S ribosomal protein L4 (L1)|
          Length = 418

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 30/84 (35%), Positives = 46/84 (54%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           ++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY  T RR  +L +A   K R 
Sbjct: 291 ILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRV 350

Query: 408 DKINSKRTKLSAEEASKIKAAGKA 337
            K+ +  T L+ +    +   G A
Sbjct: 351 KKLEAAATALATKSEKVVPEKGTA 374

>RL4_RAT (P50878) 60S ribosomal protein L4 (L1)|
          Length = 420

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 45/82 (54%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           ++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY  T RR  +L +A   K R 
Sbjct: 291 ILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRV 350

Query: 408 DKINSKRTKLSAEEASKIKAAG 343
            K+ +    L+A+    +   G
Sbjct: 351 KKLEAAAAALAAKSEKIVPEKG 372

>RL4_BOVIN (Q58DW0) 60S ribosomal protein L4|
          Length = 421

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           ++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY  T RR  +L +A   K R 
Sbjct: 291 ILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRM 350

Query: 408 DK 403
           DK
Sbjct: 351 DK 352

>RL4_URECA (P49165) 60S ribosomal protein L4 (L1)|
          Length = 386

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 29/83 (34%), Positives = 49/83 (59%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARK 409
           L+ SDE+Q+ ++   K+  RR  +KNPLKN   +++LNP+ G  +  A   E  R+K ++
Sbjct: 291 LLKSDEIQNALREPKKDKARRLQKKNPLKNYRVMMRLNPFAGAQKAAAKAVEQRRLKEKQ 350

Query: 408 DKINSKRTKLSAEEASKIKAAGK 340
            K++ KR       A+ ++ AGK
Sbjct: 351 AKLDQKR-----GIATPVEGAGK 368

>RL4_CANFA (Q28346) 60S ribosomal protein L4 (L1)|
          Length = 420

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = -1

Query: 543 KEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDK 403
           K++ RR  +KNPLKN   +LKLNPY  T RR  +L +A   K R DK
Sbjct: 306 KKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDK 352

>RL4B_SCHPO (Q9P784) 60S ribosomal protein L4-B|
          Length = 363

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = -1

Query: 588 LINSDEVQSVVKPIN-KEVKRREA-RKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKA 415
           LINSDE+QS+VK      VKR    +KNPLKN A + +LNPY             A+   
Sbjct: 292 LINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPY-------------AKAYK 338

Query: 414 RKDKINSKRTKLSAEE 367
              KINS++T  +A E
Sbjct: 339 ANVKINSEKTPKAAGE 354

>RL4_DROME (P09180) 60S ribosomal protein L4 (L1)|
          Length = 401

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLA----EAARV 421
           L+ S+E++ V++   K V R   R NPL N   ++KLNPY    +R A LA      A+V
Sbjct: 295 LLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKV 354

Query: 420 KARKDKINSKRTKLSAEEASKIKAAGKA 337
            A+  K N +  K      +   AA +A
Sbjct: 355 LAKAKKQNVELAKSHFANVATKAAANRA 382

>RL4A_SCHPO (P35679) 60S ribosomal protein L4-A (L2)|
          Length = 363

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 588 LINSDEVQSVVKPIN-KEVKRREA-RKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKA 415
           LINSDE+QS+VK      VKR    +KNPLKN A + +LNPY    +    L      KA
Sbjct: 292 LINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKLNTGKTPKA 351

Query: 414 RKDK 403
             +K
Sbjct: 352 AGEK 355

>RL4B_YEAST (P49626) 60S ribosomal protein L4-B (L2B) (RP2)|
          Length = 361

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRRE--ARKNPLKNAAAVLKLNPY 469
           +INS E+QS ++P  +  ++R    +KNPLKN   +L+LNPY
Sbjct: 288 IINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPY 329

>RL4A_YEAST (P10664) 60S ribosomal protein L4-A (L2A) (RP2)|
          Length = 361

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRRE--ARKNPLKNAAAVLKLNPY 469
           +INS E+QS ++P  +  ++R    +KNPLKN   +L+LNPY
Sbjct: 288 IINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPY 329

>RL4_XENTR (P14117) 60S ribosomal protein L4 (L1) (Fragment)|
          Length = 96

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKN 499
           ++ S E+Q  ++  NK+VKRRE +KNPLKN
Sbjct: 66  ILKSQEIQRALRAPNKKVKRRELKKNPLKN 95

>RL4_CAEEL (O02056) 60S ribosomal protein L4|
          Length = 344

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVK 418
           +I S+EV   ++   K     +  +NPLK    + KLNPY    R+    A  A VK
Sbjct: 291 IIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRK----ASKANVK 343

>GPMA_STAES (Q8CN61) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 228

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 50  TSNRTIKYATEHVSKKASTDKTLEITSYQNSIRCL 154
           T  R + + T+H+S+    DKT+ ++++ NSIR L
Sbjct: 155 TLERVVPFWTDHISQHLLDDKTVLVSAHGNSIRAL 189

>GPMA_STAEQ (Q5HLI0) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 228

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 50  TSNRTIKYATEHVSKKASTDKTLEITSYQNSIRCL 154
           T  R + + T+H+S+    DKT+ ++++ NSIR L
Sbjct: 155 TLERVVPFWTDHISQHLLDDKTVLVSAHGNSIRAL 189

>TMPB_TREPH (P29720) Treponemal membrane protein B precursor (Antigen tmpB)|
          Length = 384

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -1

Query: 546 NKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKI-NSKRTKLSAE 370
           +K  K + A++   K+ AA  K       A+  A    AA+ KA KDK    +  + +AE
Sbjct: 190 DKAAKEKAAKEKAAKDKAAKEK------AAKEKAAREMAAKEKAAKDKAAKEEAARKAAE 243

Query: 369 EASKIKAAGKA 337
           EA+  KAA +A
Sbjct: 244 EAAARKAAEEA 254

>RL4_PIG (Q29187) 60S ribosomal protein L4 (L1) (Fragment)|
          Length = 101

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 486 LKLNPYFGTARRMAVLAEAARVKARKDKINSKRTK 382
           LKLNPY  T RR  +L +    K R DK  + + K
Sbjct: 1   LKLNPYAKTMRRNTILRQXRXHKIRMDKAAALKAK 35

>PARD3_RAT (Q9Z340) Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical|
            PKC isotype-specific-interacting protein) (ASIP)
            (Atypical PKC-specific-binding protein) (ASBP)
          Length = 1337

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/95 (22%), Positives = 40/95 (42%)
 Frame = -1

Query: 555  KPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKINSKRTKLS 376
            K   KE  + +A+K  LK    + +    FG  R+   + +  R+K +    + +     
Sbjct: 1001 KDREKEKDKLKAKKGMLKGLGDMFR----FGKHRKDDKMEKMGRIKIQDSFTSEEDRVRM 1056

Query: 375  AEEASKIKAAGKAWYQTMISDSDYTEFDVFSKWLG 271
             EE  +I+A  + + +    + DY E   F +  G
Sbjct: 1057 KEEQERIQAKTREFRERQARERDYAEIQDFHRTFG 1091

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
 Frame = -1

Query: 534  KRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKINSK-------RTKLS 376
            K +E ++   +  + + +L      ARR A  AE ARV+A ++   S+       R K S
Sbjct: 2198 KEQELQQTLQQEQSVLDRLRGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQS 2257

Query: 375  AEEASKIKAAGKA 337
            AEE ++ +A  +A
Sbjct: 2258 AEEQAQARAQAQA 2270

>CDC27_HUMAN (P30260) Cell division cycle protein 27 homolog (CDC27Hs) (H-NUC)|
          Length = 824

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 86  VSKKASTDKTLEITSYQNSIRCLRLHNTTR*QNHTLGSQR 205
           + +K   D+T + TS QN   CL    TT+  NH+L  ++
Sbjct: 158 IGEKPDPDQTFKFTSLQNFSNCLPNSCTTQVPNHSLSHRQ 197

>RAD50_CAEEL (O44199) DNA repair protein rad-50 (EC 3.6.-.-)|
          Length = 1298

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
 Frame = -1

Query: 534 KRREARKNPLKNAAAVLKLNPYFGTARRM-------------AVLAEAARVKARKDKINS 394
           K+ E  +  LK   +++++ PYFGT   +             +   E AR++ +  K N 
Sbjct: 272 KKTELERQNLKKQLSLIRVEPYFGTEEELKREIEEFRGSEGRSYGEERARIQKKIGKNNQ 331

Query: 393 KRTKLSAEE 367
           +R +LS ++
Sbjct: 332 ERQELSQKK 340

>PARD3_MOUSE (Q99NH2) Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical|
            PKC isotype-specific-interacting protein) (ASIP)
            (Ephrin-interacting protein) (PHIP)
          Length = 1333

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/95 (22%), Positives = 39/95 (41%)
 Frame = -1

Query: 555  KPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKINSKRTKLS 376
            K   KE  + +A K  LK    + +    FG  R+   + +  R+K +    + +     
Sbjct: 997  KDREKEKDKLKANKGMLKGLGDMFR----FGKHRKDDKMEKMGRIKIQDSFTSEEDRVRM 1052

Query: 375  AEEASKIKAAGKAWYQTMISDSDYTEFDVFSKWLG 271
             EE  +I+A  + + +    + DY E   F +  G
Sbjct: 1053 KEEQERIQAKTREFRERQARERDYAEIQDFHRTFG 1087

>Y1158_ARCFU (O29107) Hypothetical protein AF1158|
          Length = 112

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -1

Query: 588 LINSDEVQSVVKPINKEVKRREA---RKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVK 418
           ++  D  + + K    E+K  EA    +   KN     K+      AR +   AEA  VK
Sbjct: 1   MVTMDRTEILEKIKQAEIKVEEAIRAAEEERKNKILEAKMK-----AREIIESAEAEAVK 55

Query: 417 ARKDKINSKRTKLSAEE 367
            ++D +NS R ++ AE+
Sbjct: 56  VKEDILNSARQQIEAEK 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,640,889
Number of Sequences: 219361
Number of extensions: 1051340
Number of successful extensions: 3039
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3034
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)