| Clone Name | rbags23p16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/132 (83%) Strand = Plus / Plus Query: 121 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||| ||||| Sbjct: 4215833 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215892 Query: 181 tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240 ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 4215893 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215952 Query: 241 tttcgagaaatc 252 ||| |||||||| Sbjct: 4215953 tttggagaaatc 4215964
>dbj|AK058937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F07, full insert sequence Length = 848 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/132 (83%) Strand = Plus / Minus Query: 121 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||| ||||| Sbjct: 605 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 546 Query: 181 tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240 ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 545 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 486 Query: 241 tttcgagaaatc 252 ||| |||||||| Sbjct: 485 tttggagaaatc 474
>gb|U33283.1|OSU33283 Oryza sativa Ca2+ sensitive 3'(2'),5-diphosphonucleoside 3'(2') phosphohydrolase mRNA, complete cds Length = 1480 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/132 (83%) Strand = Plus / Minus Query: 121 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||| ||||| Sbjct: 1236 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 1177 Query: 181 tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240 ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 1176 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 1117 Query: 241 tttcgagaaatc 252 ||| |||||||| Sbjct: 1116 tttggagaaatc 1105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/132 (83%) Strand = Plus / Plus Query: 121 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||| ||||| Sbjct: 4215820 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215879 Query: 181 tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240 ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 4215880 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215939 Query: 241 tttcgagaaatc 252 ||| |||||||| Sbjct: 4215940 tttggagaaatc 4215951
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/132 (83%) Strand = Plus / Minus Query: 121 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180 |||||| ||||||| |||||| ||| |||||||||||| || || |||| ||| ||||| Sbjct: 67950 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 67891 Query: 181 tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240 ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| ||| Sbjct: 67890 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 67831 Query: 241 tttcgagaaatc 252 ||| |||||||| Sbjct: 67830 tttggagaaatc 67819
>gb|AF288075.1|AF288075 Zea mays diphosphonucleotide phosphatase 1 mRNA, complete cds Length = 1453 Score = 56.0 bits (28), Expect = 6e-05 Identities = 78/95 (82%) Strand = Plus / Minus Query: 158 gcctcctggacagacttgaggagtgatggcntcaactgcttatttgtggcaatgatgcct 217 ||||| ||||||| || ||||| || ||| |||||| ||| || || || ||||||||| Sbjct: 1137 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 1078 Query: 218 gtgtcaacatcaagaaatcgccctttcgagaaatc 252 ||||| | ||| ||||||| |||||| |||||||| Sbjct: 1077 gtgtcgagatccagaaatctccctttggagaaatc 1043
>gb|AY111987.1| Zea mays CL10219_1 mRNA sequence Length = 771 Score = 56.0 bits (28), Expect = 6e-05 Identities = 78/95 (82%) Strand = Plus / Plus Query: 158 gcctcctggacagacttgaggagtgatggcntcaactgcttatttgtggcaatgatgcct 217 ||||| ||||||| || ||||| || ||| |||||| ||| || || || ||||||||| Sbjct: 389 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 448 Query: 218 gtgtcaacatcaagaaatcgccctttcgagaaatc 252 ||||| | ||| ||||||| |||||| |||||||| Sbjct: 449 gtgtcgagatcgagaaatctccctttggagaaatc 483
>gb|AC163706.2| Gallus gallus BAC clone CH261-71A16 from chromosome w, complete sequence Length = 206206 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 cctggacagacttgaggagtg 182 ||||||||||||||||||||| Sbjct: 74868 cctggacagacttgaggagtg 74888
>ref|XM_530362.1| PREDICTED: Pan troglodytes LOC458671 (LOC458671), mRNA Length = 694 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctggacagacttgaggag 180 |||||||||||||||||||| Sbjct: 632 tcctggacagacttgaggag 613
>ref|XM_534124.2| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (LC64P), transcript variant 1 (LOC476921), mRNA Length = 3110 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tgtgtcaacatcaagaaatc 236 |||||||||||||||||||| Sbjct: 2579 tgtgtcaacatcaagaaatc 2560
>ref|XM_843311.1| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (LC64P), transcript variant 2 (LOC476921), mRNA Length = 3116 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tgtgtcaacatcaagaaatc 236 |||||||||||||||||||| Sbjct: 2585 tgtgtcaacatcaagaaatc 2566
>gb|BC028231.1| Homo sapiens similar to chromosome 14 open reading frame 166B, mRNA (cDNA clone IMAGE:5240379), with apparent retained intron Length = 2945 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctggacagacttgaggag 180 |||||||||||||||||||| Sbjct: 2116 tcctggacagacttgaggag 2097
>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence Length = 152722 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tggcaatgatgcctgtgtca 223 |||||||||||||||||||| Sbjct: 5073 tggcaatgatgcctgtgtca 5092
>dbj|AK128646.1| Homo sapiens cDNA FLJ46805 fis, clone TRACH3033535 Length = 3226 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctggacagacttgaggag 180 |||||||||||||||||||| Sbjct: 2431 tcctggacagacttgaggag 2412
>ref|NM_001013675.1| Homo sapiens similar to chromosome 14 open reading frame 166B (LOC400891), mRNA Length = 3226 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctggacagacttgaggag 180 |||||||||||||||||||| Sbjct: 2431 tcctggacagacttgaggag 2412
>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region, complete sequence Length = 147086 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctggacagacttgaggag 180 |||||||||||||||||||| Sbjct: 101312 tcctggacagacttgaggag 101293
>gb|AC007664.12| Homo sapiens chromosome 22 clone b453h4 map 22q11, complete sequence Length = 162470 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctggacagacttgaggag 180 |||||||||||||||||||| Sbjct: 57398 tcctggacagacttgaggag 57379
>gb|AC002049.4| Homo sapiens Chromosome 22q11.2 Cosmid Clone 107d7 In BCRL2-GGT Region, complete sequence Length = 19026 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctggacagacttgaggag 180 |||||||||||||||||||| Sbjct: 747 tcctggacagacttgaggag 728
>gb|AC073874.4| Homo sapiens BAC clone RP11-586M15 from 2, complete sequence Length = 18461 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 tacacataaacagtgtgaat 49 |||||||||||||||||||| Sbjct: 15207 tacacataaacagtgtgaat 15226
>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence Length = 211981 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tggcaatgatgcctgtgtca 223 |||||||||||||||||||| Sbjct: 202694 tggcaatgatgcctgtgtca 202713 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,906,950 Number of Sequences: 3902068 Number of extensions: 1906950 Number of successful extensions: 30923 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30867 Number of HSP's gapped (non-prelim): 56 length of query: 255 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 233 effective length of database: 17,147,199,772 effective search space: 3995297546876 effective search space used: 3995297546876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)