ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23p16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 90 4e-15
2dbj|AK058937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 4e-15
3gb|U33283.1|OSU33283 Oryza sativa Ca2+ sensitive 3'(2'),5-diphos... 90 4e-15
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 90 4e-15
5emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial se... 90 4e-15
6gb|AF288075.1|AF288075 Zea mays diphosphonucleotide phosphatase ... 56 6e-05
7gb|AY111987.1| Zea mays CL10219_1 mRNA sequence 56 6e-05
8gb|AC163706.2| Gallus gallus BAC clone CH261-71A16 from chromoso... 42 0.83
9ref|XM_530362.1| PREDICTED: Pan troglodytes LOC458671 (LOC458671... 40 3.3
10ref|XM_534124.2| PREDICTED: Canis familiaris similar to L-plasti... 40 3.3
11ref|XM_843311.1| PREDICTED: Canis familiaris similar to L-plasti... 40 3.3
12gb|BC028231.1| Homo sapiens similar to chromosome 14 open readin... 40 3.3
13gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 40 3.3
14dbj|AK128646.1| Homo sapiens cDNA FLJ46805 fis, clone TRACH3033535 40 3.3
15ref|NM_001013675.1| Homo sapiens similar to chromosome 14 open r... 40 3.3
16gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In... 40 3.3
17gb|AC007664.12| Homo sapiens chromosome 22 clone b453h4 map 22q1... 40 3.3
18gb|AC002049.4| Homo sapiens Chromosome 22q11.2 Cosmid Clone 107d... 40 3.3
19gb|AC073874.4| Homo sapiens BAC clone RP11-586M15 from 2, comple... 40 3.3
20gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, c... 40 3.3

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                           
Query: 121     ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180
               |||||| |||||||  |||||| ||| |||||||||||| || || |||| ||| |||||
Sbjct: 4215833 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215892

                                                                           
Query: 181     tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240
               ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 4215893 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215952

                           
Query: 241     tttcgagaaatc 252
               ||| ||||||||
Sbjct: 4215953 tttggagaaatc 4215964



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>dbj|AK058937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F07, full
           insert sequence
          Length = 848

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 121 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180
           |||||| |||||||  |||||| ||| |||||||||||| || || |||| ||| |||||
Sbjct: 605 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 546

                                                                       
Query: 181 tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240
           ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 545 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 486

                       
Query: 241 tttcgagaaatc 252
           ||| ||||||||
Sbjct: 485 tttggagaaatc 474



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>gb|U33283.1|OSU33283 Oryza sativa Ca2+ sensitive 3'(2'),5-diphosphonucleoside 3'(2')
            phosphohydrolase mRNA, complete cds
          Length = 1480

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                        
Query: 121  ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180
            |||||| |||||||  |||||| ||| |||||||||||| || || |||| ||| |||||
Sbjct: 1236 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 1177

                                                                        
Query: 181  tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240
            ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 1176 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 1117

                        
Query: 241  tttcgagaaatc 252
            ||| ||||||||
Sbjct: 1116 tttggagaaatc 1105



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                           
Query: 121     ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180
               |||||| |||||||  |||||| ||| |||||||||||| || || |||| ||| |||||
Sbjct: 4215820 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215879

                                                                           
Query: 181     tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240
               ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 4215880 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215939

                           
Query: 241     tttcgagaaatc 252
               ||| ||||||||
Sbjct: 4215940 tttggagaaatc 4215951



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>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09
             of library OSJNBb from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 104999

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                         
Query: 121   ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttgaggag 180
             |||||| |||||||  |||||| ||| |||||||||||| || || |||| ||| |||||
Sbjct: 67950 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 67891

                                                                         
Query: 181   tgatggcntcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 240
             ||| ||| ||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 67890 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 67831

                         
Query: 241   tttcgagaaatc 252
             ||| ||||||||
Sbjct: 67830 tttggagaaatc 67819



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>gb|AF288075.1|AF288075 Zea mays diphosphonucleotide phosphatase 1 mRNA, complete cds
          Length = 1453

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 158  gcctcctggacagacttgaggagtgatggcntcaactgcttatttgtggcaatgatgcct 217
            ||||| |||||||  || ||||| || ||| |||||| ||| || || || |||||||||
Sbjct: 1137 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 1078

                                               
Query: 218  gtgtcaacatcaagaaatcgccctttcgagaaatc 252
            ||||| | ||| ||||||| |||||| ||||||||
Sbjct: 1077 gtgtcgagatccagaaatctccctttggagaaatc 1043



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>gb|AY111987.1| Zea mays CL10219_1 mRNA sequence
          Length = 771

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 158 gcctcctggacagacttgaggagtgatggcntcaactgcttatttgtggcaatgatgcct 217
           ||||| |||||||  || ||||| || ||| |||||| ||| || || || |||||||||
Sbjct: 389 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 448

                                              
Query: 218 gtgtcaacatcaagaaatcgccctttcgagaaatc 252
           ||||| | ||| ||||||| |||||| ||||||||
Sbjct: 449 gtgtcgagatcgagaaatctccctttggagaaatc 483



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>gb|AC163706.2| Gallus gallus BAC clone CH261-71A16 from chromosome w, complete
             sequence
          Length = 206206

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   cctggacagacttgaggagtg 182
             |||||||||||||||||||||
Sbjct: 74868 cctggacagacttgaggagtg 74888



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>ref|XM_530362.1| PREDICTED: Pan troglodytes LOC458671 (LOC458671), mRNA
          Length = 694

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 tcctggacagacttgaggag 180
           ||||||||||||||||||||
Sbjct: 632 tcctggacagacttgaggag 613



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>ref|XM_534124.2| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte
            cytosolic protein 1) (LCP-1) (LC64P), transcript variant
            1 (LOC476921), mRNA
          Length = 3110

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  tgtgtcaacatcaagaaatc 236
            ||||||||||||||||||||
Sbjct: 2579 tgtgtcaacatcaagaaatc 2560



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>ref|XM_843311.1| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte
            cytosolic protein 1) (LCP-1) (LC64P), transcript variant
            2 (LOC476921), mRNA
          Length = 3116

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  tgtgtcaacatcaagaaatc 236
            ||||||||||||||||||||
Sbjct: 2585 tgtgtcaacatcaagaaatc 2566



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>gb|BC028231.1| Homo sapiens similar to chromosome 14 open reading frame 166B, mRNA
            (cDNA clone IMAGE:5240379), with apparent retained intron
          Length = 2945

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  tcctggacagacttgaggag 180
            ||||||||||||||||||||
Sbjct: 2116 tcctggacagacttgaggag 2097



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>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 204  tggcaatgatgcctgtgtca 223
            ||||||||||||||||||||
Sbjct: 5073 tggcaatgatgcctgtgtca 5092



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>dbj|AK128646.1| Homo sapiens cDNA FLJ46805 fis, clone TRACH3033535
          Length = 3226

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  tcctggacagacttgaggag 180
            ||||||||||||||||||||
Sbjct: 2431 tcctggacagacttgaggag 2412



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>ref|NM_001013675.1| Homo sapiens similar to chromosome 14 open reading frame 166B
            (LOC400891), mRNA
          Length = 3226

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  tcctggacagacttgaggag 180
            ||||||||||||||||||||
Sbjct: 2431 tcctggacagacttgaggag 2412



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>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region,
              complete sequence
          Length = 147086

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    tcctggacagacttgaggag 180
              ||||||||||||||||||||
Sbjct: 101312 tcctggacagacttgaggag 101293



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>gb|AC007664.12| Homo sapiens chromosome 22 clone b453h4 map 22q11, complete sequence
          Length = 162470

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tcctggacagacttgaggag 180
             ||||||||||||||||||||
Sbjct: 57398 tcctggacagacttgaggag 57379



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>gb|AC002049.4| Homo sapiens Chromosome 22q11.2 Cosmid Clone 107d7 In BCRL2-GGT
           Region, complete sequence
          Length = 19026

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 tcctggacagacttgaggag 180
           ||||||||||||||||||||
Sbjct: 747 tcctggacagacttgaggag 728



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>gb|AC073874.4| Homo sapiens BAC clone RP11-586M15 from 2, complete sequence
          Length = 18461

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tacacataaacagtgtgaat 49
             ||||||||||||||||||||
Sbjct: 15207 tacacataaacagtgtgaat 15226



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>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    tggcaatgatgcctgtgtca 223
              ||||||||||||||||||||
Sbjct: 202694 tggcaatgatgcctgtgtca 202713


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,906,950
Number of Sequences: 3902068
Number of extensions: 1906950
Number of successful extensions: 30923
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30867
Number of HSP's gapped (non-prelim): 56
length of query: 255
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 233
effective length of database: 17,147,199,772
effective search space: 3995297546876
effective search space used: 3995297546876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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