ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23p08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197037.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093B11.14), mRNA Length = 1191 Score = 188 bits (95), Expect = 1e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 392 gtcggcaagggagcggtagatggagcggcgctggtggaggacgaaaccacccatggagac 451 |||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 1035 gtcggcgagggagcggtagatggcgcgccgctggtggaggacgaaccctcccatggagac 976 Query: 452 ggagcccagggcgaacccgaggaggcgctcctgcgcgaggatgctgatcatcgcg 506 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 975 ggagcccagggcgaacccgaggaggcgctcctgcgcgaggatgctgatcatcgcg 921 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 239 ttaccatccacgagagctaagatacacaacaagccggccaagtgtctcgtccactgcctt 298 |||||||||||||||||| || || ||||||| || || || ||||| |||||| |||| Sbjct: 1191 ttaccatccacgagagctgaggtatgcaacaagtcgtccgagagtctcatccactccctt 1132 Query: 299 gttccacacgtgagcca 315 |||||| |||||||||| Sbjct: 1131 gttccatacgtgagcca 1115
>dbj|AK121098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069E11, full insert sequence Length = 714 Score = 188 bits (95), Expect = 1e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 392 gtcggcaagggagcggtagatggagcggcgctggtggaggacgaaaccacccatggagac 451 |||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 216 gtcggcgagggagcggtagatggcgcgccgctggtggaggacgaaccctcccatggagac 157 Query: 452 ggagcccagggcgaacccgaggaggcgctcctgcgcgaggatgctgatcatcgcg 506 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 156 ggagcccagggcgaacccgaggaggcgctcctgcgcgaggatgctgatcatcgcg 102 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 229 aatgcttgaattaccatccacgagagctaagatacacaacaagccggccaagtgtctcgt 288 |||||||||||||||||||||||||||| || || ||||||| || || || ||||| | Sbjct: 382 aatgcttgaattaccatccacgagagctgaggtatgcaacaagtcgtccgagagtctcat 323 Query: 289 ccactgccttgttccacacgtgagcca 315 ||||| |||||||||| |||||||||| Sbjct: 322 ccactcccttgttccatacgtgagcca 296
>gb|AY107868.1| Zea mays PCO101151 mRNA sequence Length = 679 Score = 176 bits (89), Expect = 5e-41 Identities = 98/101 (97%) Strand = Plus / Minus Query: 402 gagcggtagatggagcggcgctggtggaggacgaaaccacccatggagacggagcccagg 461 ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 212 gagcggtagatggcgcggcgctggtggaggacgaaacctcccatagagacggagcccagg 153 Query: 462 gcgaacccgaggaggcgctcctgcgcgaggatgctgatcat 502 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 gcgaacccgaggaggcgctcctgcgcgaggatgctgatcat 112 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 231 tgcttgaattaccatccacgagagctaagatacacaacaagccggccaagtgtctcgtcc 290 |||||| || ||||||||||||||||||| ||||||||||| ||||| ||||||||| Sbjct: 371 tgcttggatcaccatccacgagagctaaggtacacaacaagtttcccaagagtctcgtcc 312 Query: 291 actgccttgttccacacgtgagcca 315 || ||||||||||| || ||||||| Sbjct: 311 accgccttgttccatacatgagcca 287
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 153 bits (77), Expect = 7e-34 Identities = 92/97 (94%) Strand = Plus / Minus Query: 392 gtcggcaagggagcggtagatggagcggcgctggtggaggacgaaaccacccatggagac 451 |||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 37082 gtcggcgagggagcggtagatggcgcgccgctggtggaggacgaaccctcccatggagac 37023 Query: 452 ggagcccagggcgaacccgaggaggcgctcctgcgcg 488 ||||||||||||||||||||||||||||||||||||| Sbjct: 37022 ggagcccagggcgaacccgaggaggcgctcctgcgcg 36986 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 229 aatgcttgaattaccatccacgagagctaagatacacaacaagccggccaagtgtctcgt 288 |||||||||||||||||||||||||||| || || ||||||| || || || ||||| | Sbjct: 38535 aatgcttgaattaccatccacgagagctgaggtatgcaacaagtcgtccgagagtctcat 38476 Query: 289 ccactgccttgttccacacgtgagcca 315 ||||| |||||||||| |||||||||| Sbjct: 38475 ccactcccttgttccatacgtgagcca 38449 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 481 cctgcgcgaggatgctgatcatcgcg 506 |||||||||||||||||||||||||| Sbjct: 36860 cctgcgcgaggatgctgatcatcgcg 36835
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 153 bits (77), Expect = 7e-34 Identities = 92/97 (94%) Strand = Plus / Plus Query: 392 gtcggcaagggagcggtagatggagcggcgctggtggaggacgaaaccacccatggagac 451 |||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 17637549 gtcggcgagggagcggtagatggcgcgccgctggtggaggacgaaccctcccatggagac 17637608 Query: 452 ggagcccagggcgaacccgaggaggcgctcctgcgcg 488 ||||||||||||||||||||||||||||||||||||| Sbjct: 17637609 ggagcccagggcgaacccgaggaggcgctcctgcgcg 17637645 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 229 aatgcttgaattaccatccacgagagctaagatacacaacaagccggccaagtgtctcgt 288 |||||||||||||||||||||||||||| || || ||||||| || || || ||||| | Sbjct: 17636096 aatgcttgaattaccatccacgagagctgaggtatgcaacaagtcgtccgagagtctcat 17636155 Query: 289 ccactgccttgttccacacgtgagcca 315 ||||| |||||||||| |||||||||| Sbjct: 17636156 ccactcccttgttccatacgtgagcca 17636182 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 481 cctgcgcgaggatgctgatcatcgcg 506 |||||||||||||||||||||||||| Sbjct: 17637771 cctgcgcgaggatgctgatcatcgcg 17637796 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 atggccgccggcggcgaggcg 527 ||||||||||||||||||||| Sbjct: 8662996 atggccgccggcggcgaggcg 8663016
>dbj|AK122183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150B12, full insert sequence Length = 1987 Score = 153 bits (77), Expect = 7e-34 Identities = 92/97 (94%) Strand = Plus / Minus Query: 392 gtcggcaagggagcggtagatggagcggcgctggtggaggacgaaaccacccatggagac 451 |||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 350 gtcggcgagggagcggtagatggcgcgccgctggtggaggacgaaccctcccatggagac 291 Query: 452 ggagcccagggcgaacccgaggaggcgctcctgcgcg 488 ||||||||||||||||||||||||||||||||||||| Sbjct: 290 ggagcccagggcgaacccgaggaggcgctcctgcgcg 254 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 229 aatgcttgaattaccatccacgagagctaagatacacaacaagccggccaagtgtctcgt 288 |||||||||||||||||||||||||||| || || ||||||| || || || ||||| | Sbjct: 1802 aatgcttgaattaccatccacgagagctgaggtatgcaacaagtcgtccgagagtctcat 1743 Query: 289 ccactgccttgttccacacgtgagcca 315 ||||| |||||||||| |||||||||| Sbjct: 1742 ccactcccttgttccatacgtgagcca 1716 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 481 cctgcgcgaggatgctgatcatcgcg 506 |||||||||||||||||||||||||| Sbjct: 128 cctgcgcgaggatgctgatcatcgcg 103
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 153 bits (77), Expect = 7e-34 Identities = 92/97 (94%) Strand = Plus / Plus Query: 392 gtcggcaagggagcggtagatggagcggcgctggtggaggacgaaaccacccatggagac 451 |||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 17646589 gtcggcgagggagcggtagatggcgcgccgctggtggaggacgaaccctcccatggagac 17646648 Query: 452 ggagcccagggcgaacccgaggaggcgctcctgcgcg 488 ||||||||||||||||||||||||||||||||||||| Sbjct: 17646649 ggagcccagggcgaacccgaggaggcgctcctgcgcg 17646685 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 229 aatgcttgaattaccatccacgagagctaagatacacaacaagccggccaagtgtctcgt 288 |||||||||||||||||||||||||||| || || ||||||| || || || ||||| | Sbjct: 17645136 aatgcttgaattaccatccacgagagctgaggtatgcaacaagtcgtccgagagtctcat 17645195 Query: 289 ccactgccttgttccacacgtgagcca 315 ||||| |||||||||| |||||||||| Sbjct: 17645196 ccactcccttgttccatacgtgagcca 17645222 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 481 cctgcgcgaggatgctgatcatcgcg 506 |||||||||||||||||||||||||| Sbjct: 17646811 cctgcgcgaggatgctgatcatcgcg 17646836 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 atggccgccggcggcgaggcg 527 ||||||||||||||||||||| Sbjct: 8668095 atggccgccggcggcgaggcg 8668115
>gb|AY107226.1| Zea mays PCO129068 mRNA sequence Length = 716 Score = 147 bits (74), Expect = 5e-32 Identities = 92/98 (93%) Strand = Plus / Minus Query: 405 cggtagatggagcggcgctggtggaggacgaaaccacccatggagacggagcccagggcg 464 |||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||| Sbjct: 295 cggtagatggcccggcgctggtggaggacgaagccgccgatggagacggaacccagggcg 236 Query: 465 aacccgaggaggcgctcctgcgcgaggatgctgatcat 502 |||||||||||||||||||||||||||||||||||||| Sbjct: 235 aacccgaggaggcgctcctgcgcgaggatgctgatcat 198 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 232 gcttgaattaccatccacgagagctaagatacacaacaagccggccaagtgtctcgtcca 291 |||||||| |||| ||||| || ||||| ||||||||||| || ||||| |||||||||| Sbjct: 456 gcttgaatcaccacccacgcgaactaaggtacacaacaagtcgcccaagggtctcgtcca 397 Query: 292 ctgccttgttccacacgtgagcca 315 ||||||||||||| || ||||||| Sbjct: 396 ctgccttgttccatacatgagcca 373
>ref|XM_464518.1| Oryza sativa (japonica cultivar-group), mRNA Length = 814 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 509 ggccgccggcggcgaggcggcg 530 |||||||||||||||||||||| Sbjct: 454 ggccgccggcggcgaggcggcg 433
>gb|BT018564.1| Zea mays clone EL01N0441D12.d mRNA sequence Length = 1506 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 512 cgccggcggcgaggcggcgaga 533 |||||||||||||||||||||| Sbjct: 62 cgccggcggcgaggcggcgaga 41
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 486 gcgaggatgctgatcatcgcga 507 |||||||||||||||||||||| Sbjct: 3833497 gcgaggatgctgatcatcgcga 3833476
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 509 ggccgccggcggcgaggcggcg 530 |||||||||||||||||||||| Sbjct: 5654795 ggccgccggcggcgaggcggcg 5654816
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 509 ggccgccggcggcgaggcggcg 530 |||||||||||||||||||||| Sbjct: 82531 ggccgccggcggcgaggcggcg 82552
>dbj|AK068381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147P03, full insert sequence Length = 813 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 509 ggccgccggcggcgaggcggcg 530 |||||||||||||||||||||| Sbjct: 453 ggccgccggcggcgaggcggcg 432
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 504 gcgatggccgccggcggcgaggcgg 528 |||||||| |||||||||||||||| Sbjct: 550149 gcgatggcggccggcggcgaggcgg 550173
>ref|NM_185162.1| Oryza sativa (japonica cultivar-group), mRNA Length = 807 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 175 gccgccggcggcgaggcggcg 155
>ref|NM_195723.1| Oryza sativa (japonica cultivar-group) putative transcription elongation factor (OSJNBa0093I09.29), mRNA Length = 831 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 atggccgccggcggcgaggcg 527 ||||||||||||||||||||| Sbjct: 1 atggccgccggcggcgaggcg 21
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 34235855 gccgccggcggcgaggcggcg 34235835
>emb|CT010552.2| Xenopus tropicalis finished cDNA, clone TEgg049a17 Length = 1770 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 cgaacccgaggaggcgctcct 483 ||||||||||||||||||||| Sbjct: 1009 cgaacccgaggaggcgctcct 1029
>ref|XM_750391.1| Aspergillus fumigatus Af293 MFS monosaccharide transporter (Afu2g11520) partial mRNA Length = 1683 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 acgaaaccacccatggagacg 452 ||||||||||||||||||||| Sbjct: 194 acgaaaccacccatggagacg 174
>gb|AY459340.1| Oryza sativa (japonica cultivar-group) clone CL000798.1 R2R3-MYB gene region Length = 12635 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gaaagcattatgatcaaccat 150 ||||||||||||||||||||| Sbjct: 2955 gaaagcattatgatcaaccat 2935
>gb|AC010282.6| Homo sapiens chromosome 5 clone CTC-555I19, complete sequence Length = 191131 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 ccattttaaaagcaaaagaaa 133 ||||||||||||||||||||| Sbjct: 145424 ccattttaaaagcaaaagaaa 145404
>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence Length = 147651 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 atggccgccggcggcgaggcg 527 ||||||||||||||||||||| Sbjct: 53597 atggccgccggcggcgaggcg 53617
>dbj|AK124911.1| Homo sapiens cDNA FLJ42921 fis, clone BRSSN1000056 Length = 2200 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 ccattttaaaagcaaaagaaa 133 ||||||||||||||||||||| Sbjct: 1185 ccattttaaaagcaaaagaaa 1205
>dbj|AK126876.1| Homo sapiens cDNA FLJ44928 fis, clone BRAMY3015111 Length = 4849 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 ccattttaaaagcaaaagaaa 133 ||||||||||||||||||||| Sbjct: 3835 ccattttaaaagcaaaagaaa 3855
>gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0093I09, from Chromosome 10, complete sequence Length = 172434 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 atggccgccggcggcgaggcg 527 ||||||||||||||||||||| Sbjct: 144093 atggccgccggcggcgaggcg 144113
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 16544431 gccgccggcggcgaggcggcg 16544451 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gaaagcattatgatcaaccat 150 ||||||||||||||||||||| Sbjct: 1197692 gaaagcattatgatcaaccat 1197672
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 34326327 gccgccggcggcgaggcggcg 34326307
>gb|AE004830.1| Pseudomonas aeruginosa PAO1, section 391 of 529 of the complete genome Length = 10205 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 5418 gccgccggcggcgaggcggcg 5438
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tggccgccggcggcgaggcgg 528 ||||||||||||||||||||| Sbjct: 3260809 tggccgccggcggcgaggcgg 3260829
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 99143 gccgccggcggcgaggcggcg 99163
>dbj|AK099592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043N03, full insert sequence Length = 1235 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 226 gccgccggcggcgaggcggcg 206
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 16497664 gccgccggcggcgaggcggcg 16497684 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 gaaagcattatgatcaaccat 150 ||||||||||||||||||||| Sbjct: 1197692 gaaagcattatgatcaaccat 1197672
>emb|AL831812.5|CNS08CAP Oryza sativa chromosome 12, . BAC OSJNBa0054H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155947 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 29359 gccgccggcggcgaggcggcg 29339
>emb|AL713948.4|CNS07YPR Oryza sativa chromosome 12, . BAC OJ1008_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129944 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggcg 530 ||||||||||||||||||||| Sbjct: 126335 gccgccggcggcgaggcggcg 126315
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 gaaagcattatgatcaaccat 150 ||||||||||||||||||||| Sbjct: 95090 gaaagcattatgatcaaccat 95110
>gb|DQ108245.1| Squalus sp. C (Last & Stevens, 1994) cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 652 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ttggtactgagaaatagcag 169 |||||||||||||||||||| Sbjct: 490 ttggtactgagaaatagcag 471
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gccggcggcgaggcggcgag 532 |||||||||||||||||||| Sbjct: 101126 gccggcggcgaggcggcgag 101107
>gb|AC167694.2| Daphnia pulex clone JGIAZSN-5P22, complete sequence Length = 35398 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 attgttgagaagtttcctct 552 |||||||||||||||||||| Sbjct: 27776 attgttgagaagtttcctct 27757
>ref|XM_475620.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 cggcggcgaggcggcgagat 534 |||||||||||||||||||| Sbjct: 20 cggcggcgaggcggcgagat 39
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gatcatcgcgatggccgccg 516 |||||||||||||||||||| Sbjct: 3198047 gatcatcgcgatggccgccg 3198028
>ref|XM_479022.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1783 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 gccgccggcggcgaggcggc 529 |||||||||||||||||||| Sbjct: 123 gccgccggcggcgaggcggc 142
>ref|XM_476579.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1554 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 cgcgatggccgccggcggcg 522 |||||||||||||||||||| Sbjct: 1122 cgcgatggccgccggcggcg 1141
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 cggcggcgaggcggcgagat 534 |||||||||||||||||||| Sbjct: 12671 cggcggcgaggcggcgagat 12652
>gb|AC113444.9| Mus musculus chromosome 15, clone RP23-268C9, complete sequence Length = 189539 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 atctcagctgaaactcctct 334 |||||||||||||||||||| Sbjct: 66087 atctcagctgaaactcctct 66106
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 gcggcgagattgttgagaag 544 |||||||||||||||||||| Sbjct: 521922 gcggcgagattgttgagaag 521941
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 ccgaggaggcgctcctgcgcgagg 491 |||||||||||||||||| ||||| Sbjct: 1611941 ccgaggaggcgctcctgcccgagg 1611918
>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0069E11, complete sequence Length = 136959 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggccgccggcggcgaggcg 527 |||||||||||||||||||| Sbjct: 43498 tggccgccggcggcgaggcg 43517
>gb|AC124833.1| Homo sapiens BAC clone RP11-324E12 from 7, complete sequence Length = 80050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 attggtccaatctgactatt 101 |||||||||||||||||||| Sbjct: 26624 attggtccaatctgactatt 26605
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 500 catcgcgatggccgccggcggcga 523 ||||||| |||||||||||||||| Sbjct: 4906647 catcgcgctggccgccggcggcga 4906624
>ref|XM_572392.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNH02180) partial mRNA Length = 7927 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 gcggcgagattgttgagaag 544 |||||||||||||||||||| Sbjct: 1331 gcggcgagattgttgagaag 1312
>ref|XM_644557.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (282.t00001) partial mRNA Length = 1101 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 caataaaacattttaacagg 20 |||||||||||||||||||| Sbjct: 1037 caataaaacattttaacagg 1018
>ref|XM_651240.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (14.t00036) partial mRNA Length = 2562 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 caataaaacattttaacagg 20 |||||||||||||||||||| Sbjct: 2498 caataaaacattttaacagg 2479
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 gatggccgccggcggcgagg 525 |||||||||||||||||||| Sbjct: 64022 gatggccgccggcggcgagg 64003
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ggccgccggcggcgaggcgg 528 |||||||||||||||||||| Sbjct: 3805130 ggccgccggcggcgaggcgg 3805111
>emb|AL445650.9| Human DNA sequence from clone RP11-152K20 on chromosome 1 Contains the 5' end of the USH2A gene for Usher syndrome 2A (autosomal recessive, mild) and the 3' end of the ESRRG gene for estrogen-related receptor gamma, complete sequence Length = 153705 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 538 tgagaagtttcctctttcctttta 561 |||||||||||||||||| ||||| Sbjct: 107216 tgagaagtttcctctttcatttta 107193
>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research Institute) complete sequence Length = 225777 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 acacgtgagccatctcagct 323 |||||||||||||||||||| Sbjct: 15468 acacgtgagccatctcagct 15449
>emb|AL596163.1| Listeria innocua Clip11262 complete genome, segment 1/12 Length = 231450 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaagcaaaagaaagcatta 139 |||||||||||||||||||| Sbjct: 63386 aaaagcaaaagaaagcatta 63405
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 ccatctcagctgaaactcct 332 |||||||||||||||||||| Sbjct: 67844 ccatctcagctgaaactcct 67863
>dbj|AK138788.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430070P18 product:unclassifiable, full insert sequence Length = 2342 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 atctcagctgaaactcctct 334 |||||||||||||||||||| Sbjct: 991 atctcagctgaaactcctct 972
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 gatggccgccggcggcgagg 525 |||||||||||||||||||| Sbjct: 24587120 gatggccgccggcggcgagg 24587101 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggccgccggcggcgaggcg 527 |||||||||||||||||||| Sbjct: 8364572 tggccgccggcggcgaggcg 8364591
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gccggcggcgaggcggcgag 532 |||||||||||||||||||| Sbjct: 19381900 gccggcggcgaggcggcgag 19381881
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggc 529 |||||||||||||||||||| Sbjct: 24365740 gccgccggcggcgaggcggc 24365721 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 cgcgatggccgccggcggcg 522 |||||||||||||||||||| Sbjct: 2025210 cgcgatggccgccggcggcg 2025191
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 cggcggcgaggcggcgagat 534 |||||||||||||||||||| Sbjct: 3383189 cggcggcgaggcggcgagat 3383170
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 ggaggcgctcctgcgcgagg 491 |||||||||||||||||||| Sbjct: 8745074 ggaggcgctcctgcgcgagg 8745055
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1579_C03 Length = 122851 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gccgccggcggcgaggcggc 529 |||||||||||||||||||| Sbjct: 98933 gccgccggcggcgaggcggc 98914
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0495H05 Length = 205595 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 cgcgatggccgccggcggcg 522 |||||||||||||||||||| Sbjct: 109507 cgcgatggccgccggcggcg 109488
>dbj|AK107906.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G01, full insert sequence Length = 832 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 tggccgccggcggcgaggcg 527 |||||||||||||||||||| Sbjct: 72 tggccgccggcggcgaggcg 53
>dbj|AK106800.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B10, full insert sequence Length = 1822 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 cggcggcgaggcggcgagat 534 |||||||||||||||||||| Sbjct: 186 cggcggcgaggcggcgagat 205
>dbj|AK072279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018A16, full insert sequence Length = 1783 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 gccgccggcggcgaggcggc 529 |||||||||||||||||||| Sbjct: 123 gccgccggcggcgaggcggc 142
>dbj|AK071392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091L24, full insert sequence Length = 1213 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gccggcggcgaggcggcgag 532 |||||||||||||||||||| Sbjct: 150 gccggcggcgaggcggcgag 169
>tpe|BN000652.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx123 gene for class III peroxidase 123 precursor, exons 1-3 Length = 2260 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gccggcggcgaggcggcgag 532 |||||||||||||||||||| Sbjct: 76 gccggcggcgaggcggcgag 95
>emb|CT030725.15| Mouse DNA sequence from clone RP24-281O2 on chromosome 16, complete sequence Length = 115213 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgagaagtttcctctttcct 557 |||||||||||||||||||| Sbjct: 78591 tgagaagtttcctctttcct 78610
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 cgctggtggaggacgaaaccaccc 443 |||||||||||||||| ||||||| Sbjct: 435533 cgctggtggaggacgagaccaccc 435556
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 gatggccgccggcggcgagg 525 |||||||||||||||||||| Sbjct: 24898790 gatggccgccggcggcgagg 24898771 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggccgccggcggcgaggcg 527 |||||||||||||||||||| Sbjct: 8435335 tggccgccggcggcgaggcg 8435354
>emb|AL591973.1| Listeria monocytogenes strain EGD, complete genome, segment 1/12 Length = 200050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaagcaaaagaaagcatta 139 |||||||||||||||||||| Sbjct: 71275 aaaagcaaaagaaagcatta 71294
>gb|AC159374.2| Gallus gallus BAC clone CH261-5A10 from chromosome unknown, complete sequence Length = 245547 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ttaaaagcaaaagaaagcat 137 |||||||||||||||||||| Sbjct: 85370 ttaaaagcaaaagaaagcat 85389
>emb|AJ872127.1| Tripterygion delaisi delaisi mitochondrial partial COI gene for cytochrome oxidase subunit I, isolate Azores Length = 541 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ttggtactgagaaatagcag 169 |||||||||||||||||||| Sbjct: 389 ttggtactgagaaatagcag 370
>emb|AJ872125.1| Tripterygion delaisi delaisi mitochondrial partial COI gene for cytochrome oxidase subunit I, isolate Canary Islands, haplotype 1 Length = 541 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ttggtactgagaaatagcag 169 |||||||||||||||||||| Sbjct: 389 ttggtactgagaaatagcag 370
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaagcaaaagaaagcatta 139 |||||||||||||||||||| Sbjct: 77440 aaaagcaaaagaaagcatta 77459
>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete sequence Length = 220669 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aataaaacattttaacaggg 21 |||||||||||||||||||| Sbjct: 187771 aataaaacattttaacaggg 187790 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,069,976 Number of Sequences: 3902068 Number of extensions: 5069976 Number of successful extensions: 115697 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113472 Number of HSP's gapped (non-prelim): 2224 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
