>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)|
          Length = 681

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -1

Query: 434 SEVPITTYQKTATGTVCDTSHGSSNGKSATPPVQLNSASSLSGKGLAPAKRPSSRPTDFF 255
           SE  ++T  + + G   D +HG   G ++  P  L  A+S+     APA  PS  P    
Sbjct: 234 SEARMSTAARDSEGW--DHAHGGGTGDTSRSPAGLRRANSVQAARPAPAPVPSPAPP--- 288

Query: 254 QSFRKERPGGAKAHVDAGQ 198
           Q  +   PGG++A    G+
Sbjct: 289 QPVQPGPPGGSRATPGPGR 307

>SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II)|
          Length = 582

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
 Frame = -1

Query: 506 QVEKQKIIKDSAGKLLNQI---NEGVRSEVPITTYQKTATGTVCDTSHGSSNGKSATPPV 336
           QVE +++I +     +NQ+      +  + P+TT Q+  +GT+ D    SS      PP 
Sbjct: 399 QVEDRQLITELVISKMNQLLSRTPALSPQRPLTT-QQPQSGTLKDPD--SSKTPPQRPPP 455

Query: 335 QLNSASSLS----GKGLAPAKRP-------SSRPTDFFQSFRKERPGGAKAHVDAGQQGT 189
           Q            GK L P + P       SS  +    S   +RPGG   H DA    +
Sbjct: 456 QGGPGQPQGMQPPGKVLPPRRLPPGPSLPPSSSSSSSSSSSAPQRPGGPTTHGDAPSSSS 515

Query: 188 TVQRDLRPL 162
           ++     PL
Sbjct: 516 SLAEAQPPL 524

>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (hPER)
          Length = 1290

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = -1

Query: 428 VPITTYQKTATGTVCDTSHGSSNGKSATPPVQLNS-----ASSLSGKGLAPAKRP 279
           +P TT +K A+ +   TS  S + +  T PV + +     +++LSG+G  P K P
Sbjct: 643 LPSTTKRKCASSSSYTTSSASDDDRQRTGPVSVGTKKDPPSAALSGEGATPRKEP 697

>COX3_COREF (Q8FNQ9) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III) (Cytochrome aa3 subunit 3)
          Length = 205

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -1

Query: 704 VLIGLDTIF*GSNCFTFFTLVGSSILLQSNMYSL*FLLSGAFRVWKCHTGHTKETILLLL 525
           + I L +IF     + +FTLVG  + +QS++Y   F ++  F     H  H    +  + 
Sbjct: 107 ITIILGSIFVIGQAYEYFTLVGHGLSIQSSVYGSAFYITTGF-----HAAHVIAGV--IA 159

Query: 524 FTHVFLQVEKQK 489
           F  V ++++K K
Sbjct: 160 FVVVLMRIQKAK 171

>SWC5_YARLI (Q6C7G8) SWR1-complex protein 5|
          Length = 194

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = -1

Query: 500 EKQKIIKDSAGKLLNQINEG--VRSEVPITTYQKTATGTVCDTSHGSSNGKSATPPVQLN 327
           E+ K+ KD+  K+  ++  G    +E+   T +K    T   T   ++   S TP     
Sbjct: 51  EEVKVDKDAMRKIYEEMKSGSGAANEIKPVTVKKPDVTTTQTTQQETA---STTPTASTT 107

Query: 326 SASSLSGKGLAPAKRPSSRPTDFFQSFRKERPG 228
           S ++ +    APA  PSS  T+  +  ++ + G
Sbjct: 108 STTTSTTSAPAPASIPSSAATNKVKKPKRPKKG 140

>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)|
          Length = 1244

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
 Frame = -1

Query: 482 KDSAGKLLNQIN--EGV-----RSEVPITTYQKTATGTVCDTSHGSSNGKSATPPVQLN- 327
           K+S+G    QIN  + +        +P TT +K A+ + C  S  S + K    PV +  
Sbjct: 618 KESSGCSYQQINCLDSILRYLESCNIPNTTKRKCASSS-CTASSASDDDKQRAGPVPVGA 676

Query: 326 ----SASSLSGKGLAPAKRP 279
               S++ LSG+G  P K P
Sbjct: 677 KKDTSSAVLSGEGATPRKEP 696

>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -1

Query: 428 VPITTYQKTATGTVCDTSHGSSNGKSATPPVQLN-----SASSLSGKGLAPAKRP 279
           +P TT +K A+ +    S  S + K    PV +      S++ LSG+G  P K P
Sbjct: 643 IPSTTKRKCASSSSYTASSASDDDKQRAGPVPVGAKKDPSSAMLSGEGATPRKEP 697

>RP3A_BOVIN (Q06846) Rabphilin-3A (Exophilin-1)|
          Length = 704

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 26/89 (29%), Positives = 36/89 (40%)
 Frame = -1

Query: 383 DTSHGSSNGKSATPPVQLNSASSLSGKGLAPAKRPSSRPTDFFQSFRKERPGGAKAHVDA 204
           D  HG + G  +  P  L  A+S+     APA   S  P    Q  +   PGG++     
Sbjct: 255 DQGHGMAAGDPSQSPAGLRRANSVQASRPAPASMQSPAPP---QPGQPGPPGGSRP--SP 309

Query: 203 GQQGTTVQRDLRPLIFKYNEGYTNAVKRP 117
           G  G     D RP +   +  YT A  +P
Sbjct: 310 GPTGRF--PDQRPEVAPSDPDYTGAAAQP 336

>MUTA_PIG (Q8MI68) Methylmalonyl-CoA mutase, mitochondrial precursor (EC|
           5.4.99.2) (MCM) (Methylmalonyl-CoA isomerase)
          Length = 750

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 LHLCSPHCI*RSVGASPSELLFLAALHQHEPLHP 229
           L L SPH + +   +S S L++   LHQ +PLHP
Sbjct: 8   LFLLSPHRLKQLKKSSGSRLVWQRLLHQQQPLHP 41

>DCUP_MAIZE (O81220) Uroporphyrinogen decarboxylase, chloroplast precursor (EC|
           4.1.1.37) (URO-D) (UPD)
          Length = 393

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 353 SATPPVQLNSASSLSGKGL-----APAKRPSSRPTDFFQSFRKERPGGAKAHVDAGQQGT 189
           +A PP+ L S S   G+       A + RPS+      +S+R+ RP G +A      Q  
Sbjct: 3   TACPPLSLPSTSLFRGRSARAGPNAGSSRPSAAAPSERRSWRRPRPDGGRAAAGERNQRE 62

Query: 188 TVQR 177
            V+R
Sbjct: 63  EVER 66

>DBP1_YEAST (P24784) ATP-dependent RNA helicase DBP1 (EC 3.6.1.-) (DEAD box|
           protein 1) (Helicase CA1)
          Length = 617

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
 Frame = -1

Query: 410 QKTATGTVCDTSHGSSNGKSATPPVQLNSASSLSGKGLAPAKRPSSRPTDFFQ------- 252
           QK +  ++ +  +G   GKS+  P  L S    S +   P +       DFF+       
Sbjct: 6   QKVSNLSINNKENGGGGGKSSYVPPHLRSRGKPSFERSTPKQEDKVTGGDFFRRAGRQTG 65

Query: 251 ------SFRKERPGGAKAHVDAG 201
                  F KER GG  A+ + G
Sbjct: 66  NNGGFFGFSKERNGGTSANYNRG 88

>MUTA_HUMAN (P22033) Methylmalonyl-CoA mutase, mitochondrial precursor (EC|
           5.4.99.2) (MCM) (Methylmalonyl-CoA isomerase)
          Length = 750

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 128 LHLCSPHCI*RSVGASPSELLFLAALHQHEPLHP 229
           L L SPH + +   +S S L+    LHQ +PLHP
Sbjct: 8   LFLLSPHYLRQVKESSGSRLIQQRLLHQQQPLHP 41

>RIMS1_MOUSE (Q99NE5) Regulating synaptic membrane exocytosis protein 1|
           (Rab3-interacting molecule 1) (RIM 1) (Rab3-interacting
           protein 1) (Fragment)
          Length = 388

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/87 (25%), Positives = 41/87 (47%)
 Frame = -1

Query: 455 QINEGVRSEVPITTYQKTATGTVCDTSHGSSNGKSATPPVQLNSASSLSGKGLAPAKRPS 276
           ++ E  RS+ P++T   ++  T    SHG+        P+  N  +  S + L P ++ +
Sbjct: 234 RLQERSRSQTPLSTAAVSSQDTA---SHGA--------PLDRNKGAEPSQQALGPEQKQA 282

Query: 275 SRPTDFFQSFRKERPGGAKAHVDAGQQ 195
           SR        RK+ PG ++ +   GQ+
Sbjct: 283 SRSRSEPPRERKKAPGLSEQNGKGGQK 309

>OTOF_HUMAN (Q9HC10) Otoferlin (Fer-1-like protein 2)|
          Length = 1997

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = -1

Query: 494 QKIIKDS----AGKLLNQINEGVRSEVPITTYQKTATGTVCDTSHGSSNGKSATPPVQLN 327
           QK++++S       L++  N  +++ + +    +   GTV     G   G  +   +Q  
Sbjct: 86  QKVVEESHVEVTDTLIDDNNAIIKTSLCVEVRYQATDGTVGSWDDGDFLGDES---LQEE 142

Query: 326 SASSLSGKGLAPAKRPSSRPTDFFQSFRK 240
              S    GL P  RPSSRP    +SFR+
Sbjct: 143 EKDSQETDGLLPGSRPSSRPPG-EKSFRR 170

>MUTA_MACFA (Q8HXX1) Methylmalonyl-CoA mutase, mitochondrial precursor (EC|
           5.4.99.2) (MCM) (Methylmalonyl-CoA isomerase)
          Length = 750

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 128 LHLCSPHCI*RSVGASPSELLFLAALHQHEPLHP 229
           L L SPH + +   +S S L+    LHQ +PLHP
Sbjct: 8   LFLLSPHYLKQVKESSGSRLIRQRFLHQQQPLHP 41

>MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment)|
          Length = 1150

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
 Frame = -1

Query: 452 INEGVRSEVPITTYQKTATGTVCDTSHGSSNGKSATPPVQLNSASS----------LSGK 303
           INEG RS    TT   + T     TS+   +G S TP   +N+  S           +  
Sbjct: 640 INEGTRSTSLGTTRVASGTTYESGTSNSVPSGGSGTPGSGINTGGSSTQVTGIQTGTTAV 699

Query: 302 GLAPAKRPSSRPTDFFQSFRKERPGGAKAHVDAGQQGTTV 183
           G      P S  T    S  +    G+K  +     GTTV
Sbjct: 700 GFGSTLLPGSSNTGATTSPSERTSPGSKTGITRVVSGTTV 739

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (Motch B) [Contains: Notch 2 extracellular truncation;
            Notch 2 intracellular domain]
          Length = 2470

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 120  SFNCICVALIVFEDQWAQVPLNCCSLLPCINMSLCTPWSFFPKALKEISWAT*GSLCRC 296
            ++NCIC +   F  +  +  L+ C   PC+N   C   S  P           G +CRC
Sbjct: 1285 NYNCICRS--AFTGRHCETFLDVCPQKPCLNGGTCAVASNMPD----------GFICRC 1331

>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1154

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
 Frame = -1

Query: 434 SEVPITTYQKTATGTVCDTSHGSSNGKSATPPVQLNSASS-----------LSGKGLAPA 288
           S+ P  T Q  A+ TV   S  S   +S  PP +   +             L+  G APA
Sbjct: 194 SQPPPQTPQTVASETVALNSQTSEPVESEAPPREPMESEEMEERPPTQTPELAPSGPAPA 253

Query: 287 KRPSSRPTDFFQSFRKERPGGAKAHVDAGQQGTTVQRDLRPLIFKYNE 144
               + P    ++     P  A+ HV+  Q+   +QR L+P + +Y E
Sbjct: 254 GPAPAGPAPAPETNAPNHPSPAE-HVEVLQELQRLQRRLQPFLQRYCE 300


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,049,970
Number of Sequences: 219361
Number of extensions: 2040923
Number of successful extensions: 5761
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5755
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)