ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23p05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 8e-56
2gb|AY107890.1| Zea mays PCO143404 mRNA sequence 145 2e-31
3ref|XM_472288.1| Oryza sativa (japonica cultivar-group), predic... 125 2e-25
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 105 2e-19
6emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 ... 56 2e-04
7gb|AE006470.1| Chlorobium tepidum TLS, complete genome 46 0.15
8gb|AC109778.8| Homo sapiens 3 BAC RP11-17O13 (Roswell Park Cance... 44 0.61
9gb|AE011695.1| Xanthomonas axonopodis pv. citri str. 306, secti... 44 0.61
10gb|AC092723.3| Homo sapiens chromosome 16 clone RP11-542M13, com... 44 0.61
11gb|AC008771.4|AC008771 Homo sapiens chromosome 5 clone CTD-2015H... 44 0.61
12gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, compl... 44 0.61
13gb|AC166099.2| Mus musculus BAC clone RP24-254H22 from chromosom... 44 0.61
14gb|AC166360.4| Mus musculus BAC clone RP24-497L5 from chromosome... 44 0.61
15emb|AL663041.6| Mouse DNA sequence from clone RP23-342H16 on chr... 44 0.61
16ref|NM_112491.5| Arabidopsis thaliana unknown protein AT3G16200 ... 42 2.4
17gb|AC099045.21| Trypanosoma brucei chromosome 8 clone RPCI93-29O... 42 2.4
18gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 42 2.4
19ref|XM_368087.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 2.4
20ref|XM_820787.1| Trypanosoma brucei TREU927 clone RPCI93-29O9 AT... 42 2.4
21gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosom... 42 2.4
22emb|BX571704.13| Zebrafish DNA sequence from clone DKEY-33M14 in... 42 2.4
23gb|AY128888.1| Arabidopsis thaliana unknown protein (At3g16200) ... 42 2.4
24gb|AC108516.5| Homo sapiens BAC clone RP11-529H2 from 4, complet... 42 2.4
25gb|AY099696.1| Arabidopsis thaliana unknown protein (At3g16200) ... 42 2.4
26emb|BX822287.1|CNS0A73V Arabidopsis thaliana Full-length cDNA Co... 42 2.4
27emb|BX822858.1|CNS0A71O Arabidopsis thaliana Full-length cDNA Co... 42 2.4
28emb|BX823343.1|CNS0A6IT Arabidopsis thaliana Full-length cDNA Co... 42 2.4
29dbj|AB023046.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.4
30ref|XM_581476.2| PREDICTED: Bos taurus similar to protein tyrosi... 40 9.5
31gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, com... 40 9.5
32ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@... 40 9.5
33ref|NM_018932.3| Homo sapiens protocadherin beta 12 (PCDHB12), mRNA 40 9.5
34gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, co... 40 9.5
35gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, compl... 40 9.5
36emb|Z81479.1|CEC34F6 Caenorhabditis elegans Cosmid C34F6, comple... 40 9.5
37gb|AC107883.6| Homo sapiens chromosome 15, clone CTD-2318C11, co... 40 9.5
38gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 9.5
39gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 9.5
40gb|BC045637.1| Homo sapiens protocadherin beta 12, mRNA (cDNA cl... 40 9.5
41emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chro... 40 9.5
42gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Can... 40 9.5
43gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 ma... 40 9.5
44gb|AC009036.7| Homo sapiens chromosome 16 clone RP11-142L23, com... 40 9.5
45gb|AC013526.7| Homo sapiens, clone RP11-114I24, complete sequence 40 9.5
46gb|AC009063.8| Homo sapiens chromosome 16 clone RP11-298D21, com... 40 9.5
47gb|AF217746.1|AF217746 Homo sapiens protocadherin-beta12 (PCDHB1... 40 9.5
48dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
49gb|AC022692.11| Homo sapiens chromosome 15, clone RP11-530L17, c... 40 9.5
50gb|AC012320.6|AC012320 Homo sapiens chromosome 16 clone RP11-280... 40 9.5
51gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complet... 40 9.5
52gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, co... 40 9.5
53gb|AC105036.14| Homo sapiens chromosome 15, clone CTD-2323K18, c... 40 9.5
54dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
55dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
56dbj|AB097117.1| Thermus thermophilus genes for alpha-aminoadipat... 40 9.5
57gb|BC070710.1| Xenopus laevis Myc binding protein Xmax2, mRNA (c... 40 9.5
58ref|XM_318505.2| Anopheles gambiae str. PEST ENSANGP00000021750 ... 40 9.5
59gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, compl... 40 9.5
60gb|AF152491.1|AF152491 Homo sapiens protocadherin beta 12 (PCDH-... 40 9.5
61gb|AC005752.1|AC005752 Homo sapiens chromosome 5, BAC clone 182a... 40 9.5
62emb|BX296531.5| Mouse DNA sequence from clone RP24-82I9 on chrom... 40 9.5
63gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 9.5
64gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 40 9.5 
>dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D01, full
            insert sequence
          Length = 1310

 Score =  226 bits (114), Expect = 8e-56
 Identities = 234/274 (85%)
 Strand = Plus / Minus

                                                                        
Query: 302  tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 361
            ||||||||||||||| || |||||||||||||| || ||||||| |||| ||||||| ||
Sbjct: 1014 tcacactgagcaaggactctgccacattgatatgtccgatattaaatcatggagttggtc 955

                                                                        
Query: 362  gatgaggagctttagttgtttgtttttgcttccaatttcctttctcaaagaagatgcatg 421
            ||| ||||||||||  || |||||||||||| |||||||||||||||||| |||||||||
Sbjct: 954  gataaggagctttacatgcttgtttttgctttcaatttcctttctcaaagcagatgcatg 895

                                                                        
Query: 422  ctcttccaatctctcaatctcggcttgatcacctttggattctgttggccccggctcctg 481
             |||||||||||||||||||| ||||||||| |||||  |||||| |  |||  ||||||
Sbjct: 894  ttcttccaatctctcaatctcagcttgatcagctttgtgttctgtcgatcccatctcctg 835

                                                                        
Query: 482  agtagagggtgacaccgcggcaatggacgcacgcaaagccgccacggcgatcttgtaccg 541
            || | |||  ||||| ||||| |||||||  || |  ||||||| ||||| |||||||||
Sbjct: 834  agcacaggacgacacggcggcgatggacgtgcggagcgccgccatggcgaccttgtaccg 775

                                              
Query: 542  gtgcctcgcctcgtcgagcgaaccacccgagccc 575
            |||||| |||||||||||||| || || ||||||
Sbjct: 774  gtgcctggcctcgtcgagcgacccgccggagccc 741
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>gb|AY107890.1| Zea mays PCO143404 mRNA sequence
          Length = 645

 Score =  145 bits (73), Expect = 2e-31
 Identities = 124/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 302 tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 361
           |||||| ||||||||||| |||||||| | ||  || | |||||| |||||||| |||||
Sbjct: 482 tcacacagagcaagggctctgccacatggctacgtcagttattaggtcacggagctgatc 541

                                                                       
Query: 362 gatgaggagctttagttgtttgtttttgcttccaatttcctttctcaaagaagatgcatg 421
            ||||||||||||| ||| |||||||||||| ||||||||||||| |||| ||| |||||
Sbjct: 542 catgaggagctttacttgcttgtttttgctttcaatttcctttcttaaagcagaagcatg 601

                                
Query: 422 ctcttccaatctctcaatctc 442
           |||||||||||||||||||||
Sbjct: 602 ctcttccaatctctcaatctc 622
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>ref|XM_472288.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 594

 Score =  125 bits (63), Expect = 2e-25
 Identities = 147/175 (84%)
 Strand = Plus / Minus

                                                                       
Query: 401 ctttctcaaagaagatgcatgctcttccaatctctcaatctcggcttgatcacctttgga 460
           ||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||  
Sbjct: 495 ctttctcaaagcagatgcatgttcttccaatctctcaatctcagcttgatcagctttgtg 436

                                                                       
Query: 461 ttctgttggccccggctcctgagtagagggtgacaccgcggcaatggacgcacgcaaagc 520
           |||||| |  |||  |||||||| | |||  ||||| ||||| |||||||  || |  ||
Sbjct: 435 ttctgtcgatcccatctcctgagcacaggacgacacggcggcgatggacgtgcggagcgc 376

                                                                  
Query: 521 cgccacggcgatcttgtaccggtgcctcgcctcgtcgagcgaaccacccgagccc 575
           ||||| ||||| ||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 375 cgccatggcgaccttgtaccggtgcctggcctcgtcgagcgacccgccggagccc 321
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                            
Query: 302      tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 361
                ||||||||||||||| || |||||||||||||| || ||||||| |||| ||||||| ||
Sbjct: 19125105 tcacactgagcaaggactctgccacattgatatgtccgatattaaatcatggagttggtc 19125164

                                                         
Query: 362      gatgaggagctttagttgtttgtttttgcttccaatttcct 402
                ||| ||||||||||  || |||||||||||| |||||||||
Sbjct: 19125165 gataaggagctttacatgcttgtttttgctttcaatttcct 19125205



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 400      cctttctcaaagaagatgcatgctcttccaatctctcaatctcggcttgatcacctttg 458
                |||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct: 19126773 cctttctcaaagcagatgcatgttcttccaatctctcaatctcagcttgatcagctttg 19126831



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                         
Query: 519      gccgccacggcgatcttgtaccggtgcctcgcctcgtcgagcgaaccacccgagccc 575
                ||||||| ||||| ||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 19127321 gccgccatggcgaccttgtaccggtgcctggcctcgtcgagcgacccgccggagccc 19127377
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                         
Query: 302   tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 361
             ||||||||||||||| || |||||||||||||| || ||||||| |||| ||||||| ||
Sbjct: 58626 tcacactgagcaaggactctgccacattgatatgtccgatattaaatcatggagttggtc 58685

                                                      
Query: 362   gatgaggagctttagttgtttgtttttgcttccaatttcct 402
             ||| ||||||||||  || |||||||||||| |||||||||
Sbjct: 58686 gataaggagctttacatgcttgtttttgctttcaatttcct 58726



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                        
Query: 400   cctttctcaaagaagatgcatgctcttccaatctctcaatctcggcttgatcacctttg 458
             |||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct: 60294 cctttctcaaagcagatgcatgttcttccaatctctcaatctcagcttgatcagctttg 60352



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                      
Query: 519   gccgccacggcgatcttgtaccggtgcctcgcctcgtcgagcgaaccacccgagccc 575
             ||||||| ||||| ||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 60842 gccgccatggcgaccttgtaccggtgcctggcctcgtcgagcgacccgccggagccc 60898
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>emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3,
           complete sequence
          Length = 104085

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 400 cctttctcaaagaagatgcatgctcttccaatctctcaat 439
           |||||||||||||||| || |||||||||||| |||||||
Sbjct: 229 cctttctcaaagaagaggcttgctcttccaatttctcaat 268
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 509    cgcacgcaaagccgccacggcga 531
              |||||||||||||||||||||||
Sbjct: 386265 cgcacgcaaagccgccacggcga 386243
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>gb|AC109778.8| Homo sapiens 3 BAC RP11-17O13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 69333

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 382   tgtttttgcttccaatttcctt 403
             ||||||||||||||||||||||
Sbjct: 43808 tgtttttgcttccaatttcctt 43787
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>gb|AE011695.1| Xanthomonas axonopodis pv. citri str. 306,  section 73 of 469 of the
             complete genome
          Length = 12018

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 547   tcgcctcgtcgagcgaaccacc 568
             ||||||||||||||||||||||
Sbjct: 11041 tcgcctcgtcgagcgaaccacc 11020
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>gb|AC092723.3| Homo sapiens chromosome 16 clone RP11-542M13, complete sequence
          Length = 188458

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 640   tttgggtggtgggggatgctgggagg 665
             ||||||||||||||| ||||||||||
Sbjct: 39059 tttgggtggtgggggctgctgggagg 39084
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>gb|AC008771.4|AC008771 Homo sapiens chromosome 5 clone CTD-2015H6, complete sequence
          Length = 123169

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 12    agacagaaaatagaagaatagc 33
             ||||||||||||||||||||||
Sbjct: 97114 agacagaaaatagaagaatagc 97093
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>gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, complete sequence
          Length = 126052

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    agacagaaaatagaagaatagc 33
             ||||||||||||||||||||||
Sbjct: 84439 agacagaaaatagaagaatagc 84460
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>gb|AC166099.2| Mus musculus BAC clone RP24-254H22 from chromosome 17, complete
             sequence
          Length = 164625

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 372   tttagttgtttgtttttgcttc 393
             ||||||||||||||||||||||
Sbjct: 71895 tttagttgtttgtttttgcttc 71916
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>gb|AC166360.4| Mus musculus BAC clone RP24-497L5 from chromosome 17, complete sequence
          Length = 201109

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 372   tttagttgtttgtttttgcttc 393
             ||||||||||||||||||||||
Sbjct: 48682 tttagttgtttgtttttgcttc 48703
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>emb|AL663041.6| Mouse DNA sequence from clone RP23-342H16 on chromosome 11, complete
            sequence
          Length = 167123

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 307  ctgagcaagggctttgccacattgat 332
            |||||||| |||||||||||||||||
Sbjct: 5165 ctgagcaaaggctttgccacattgat 5140



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 307  ctgagcaagggctttgccacattgat 332
            |||||||| |||||||||||||||||
Sbjct: 4913 ctgagcaaaggctttgccacattgat 4888
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>ref|NM_112491.5| Arabidopsis thaliana unknown protein AT3G16200 mRNA, complete cds
          Length = 1608

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 ttgcttccaatttcctttctc 407
           |||||||||||||||||||||
Sbjct: 203 ttgcttccaatttcctttctc 223
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>gb|AC099045.21| Trypanosoma brucei chromosome 8 clone RPCI93-29O9, complete sequence
          Length = 140978

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 674   gccgcggtggcngtggcagtggcg 697
             ||||||||||| ||||||||||||
Sbjct: 63874 gccgcggtggcggtggcagtggcg 63897
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 674    gccgcggtggcngtggcagtggcg 697
              ||||||||||| ||||||||||||
Sbjct: 493519 gccgcggtggcggtggcagtggcg 493542
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>ref|XM_368087.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG01157.4) partial mRNA
          Length = 1464

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 525  acggcgatcttgtaccggtgc 545
            |||||||||||||||||||||
Sbjct: 1079 acggcgatcttgtaccggtgc 1059
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>ref|XM_820787.1| Trypanosoma brucei TREU927 clone RPCI93-29O9 ATP-dependent DEAD/H RNA
            helicase (Tb927.8.1510) partial mRNA
          Length = 1710

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 674  gccgcggtggcngtggcagtggcg 697
            ||||||||||| ||||||||||||
Sbjct: 1367 gccgcggtggcggtggcagtggcg 1390
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>gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosome 9, complete sequence
          Length = 215017

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 380    tttgtttttgcttccaatttccttt 404
              ||||||||||||||||||| |||||
Sbjct: 105124 tttgtttttgcttccaattcccttt 105148
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>emb|BX571704.13| Zebrafish DNA sequence from clone DKEY-33M14 in linkage group 9, complete
              sequence
          Length = 219065

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 144    aatacagcacaatttcacaat 164
              |||||||||||||||||||||
Sbjct: 102021 aatacagcacaatttcacaat 102041
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>gb|AY128888.1| Arabidopsis thaliana unknown protein (At3g16200) mRNA, complete cds
          Length = 1485

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 ttgcttccaatttcctttctc 407
           |||||||||||||||||||||
Sbjct: 113 ttgcttccaatttcctttctc 133
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>gb|AC108516.5| Homo sapiens BAC clone RP11-529H2 from 4, complete sequence
          Length = 186202

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    agacagaaaatagaagaatag 32
             |||||||||||||||||||||
Sbjct: 52737 agacagaaaatagaagaatag 52717
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>gb|AY099696.1| Arabidopsis thaliana unknown protein (At3g16200) mRNA, complete cds
          Length = 1555

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 ttgcttccaatttcctttctc 407
           |||||||||||||||||||||
Sbjct: 150 ttgcttccaatttcctttctc 170
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>emb|BX822287.1|CNS0A73V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZD12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1516

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 ttgcttccaatttcctttctc 407
           |||||||||||||||||||||
Sbjct: 139 ttgcttccaatttcctttctc 159
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>emb|BX822858.1|CNS0A71O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB69ZF01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1477

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 ttgcttccaatttcctttctc 407
           |||||||||||||||||||||
Sbjct: 139 ttgcttccaatttcctttctc 159
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>emb|BX823343.1|CNS0A6IT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS25ZB06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1565

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 ttgcttccaatttcctttctc 407
           |||||||||||||||||||||
Sbjct: 178 ttgcttccaatttcctttctc 198
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>dbj|AB023046.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6
          Length = 75289

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  ttgcttccaatttcctttctc 407
            |||||||||||||||||||||
Sbjct: 6291 ttgcttccaatttcctttctc 6271
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>ref|XM_581476.2| PREDICTED: Bos taurus similar to protein tyrosine phosphatase,
           non-receptor type 9 (LOC505220), mRNA
          Length = 3870

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 567 cccgagccccccgcggctcc 586
           ||||||||||||||||||||
Sbjct: 42  cccgagccccccgcggctcc 23
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>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence
          Length = 157629

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   ttgtttgtttttgcttccaa 396
             ||||||||||||||||||||
Sbjct: 41046 ttgtttgtttttgcttccaa 41027
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>ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@) on chromosome 5
          Length = 257923

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 562    aaccacccgagccccccgcg 581
              ||||||||||||||||||||
Sbjct: 177233 aaccacccgagccccccgcg 177214
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>ref|NM_018932.3| Homo sapiens protocadherin beta 12 (PCDHB12), mRNA
          Length = 3422

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 aaccacccgagccccccgcg 581
           ||||||||||||||||||||
Sbjct: 390 aaccacccgagccccccgcg 371
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>gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, complete sequence
          Length = 170056

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   acttgtaggaattgattagc 292
             ||||||||||||||||||||
Sbjct: 28316 acttgtaggaattgattagc 28297
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>gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, complete sequence
          Length = 174774

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   acttgtaggaattgattagc 292
             ||||||||||||||||||||
Sbjct: 47827 acttgtaggaattgattagc 47846
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>emb|Z81479.1|CEC34F6 Caenorhabditis elegans Cosmid C34F6, complete sequence
          Length = 44369

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   gctcgttacatttctcaaat 133
             ||||||||||||||||||||
Sbjct: 40027 gctcgttacatttctcaaat 40008
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>gb|AC107883.6| Homo sapiens chromosome 15, clone CTD-2318C11, complete sequence
          Length = 43603

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   tagcagtgacaactcacactgagc 312
             ||||||||||| ||||||||||||
Sbjct: 22912 tagcagtgacagctcacactgagc 22935
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 438     atctcggcttgatcaccttt 457
               ||||||||||||||||||||
Sbjct: 3666258 atctcggcttgatcaccttt 3666277
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 344    tagatcacggagttgatcgatgaggagc 371
              ||||||| || |||||||||||||||||
Sbjct: 228537 tagatcatggcgttgatcgatgaggagc 228510
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>gb|BC045637.1| Homo sapiens protocadherin beta 12, mRNA (cDNA clone MGC:41768
           IMAGE:5302381), complete cds
          Length = 3423

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 aaccacccgagccccccgcg 581
           ||||||||||||||||||||
Sbjct: 390 aaccacccgagccccccgcg 371
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>emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chromosome 4 Contains a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              a novel gene and the 3' end of a novel gene, complete
              sequence
          Length = 218922

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 652    gggatgctgggaggcggcggaagc 675
              |||||||||||||| |||||||||
Sbjct: 186471 gggatgctgggaggtggcggaagc 186448
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>gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 106673

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    agcaaatctacatttaacac 112
             ||||||||||||||||||||
Sbjct: 95158 agcaaatctacatttaacac 95177
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>gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete
             sequence
          Length = 115359

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   tcttgggacttgtaggaatt 285
             ||||||||||||||||||||
Sbjct: 93509 tcttgggacttgtaggaatt 93490
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>gb|AC009036.7| Homo sapiens chromosome 16 clone RP11-142L23, complete sequence
          Length = 193790

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 253   taactatcagatctcttgggactt 276
             |||||||||||||||||| |||||
Sbjct: 60046 taactatcagatctcttgagactt 60023
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>gb|AC013526.7| Homo sapiens, clone RP11-114I24, complete sequence
          Length = 156895

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   agctttagttgtttgttttt 388
             ||||||||||||||||||||
Sbjct: 79188 agctttagttgtttgttttt 79169
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>gb|AC009063.8| Homo sapiens chromosome 16 clone RP11-298D21, complete sequence
          Length = 194237

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 253    taactatcagatctcttgggactt 276
              |||||||||||||||||| |||||
Sbjct: 178224 taactatcagatctcttgagactt 178201
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>gb|AF217746.1|AF217746 Homo sapiens protocadherin-beta12 (PCDHB12) mRNA, complete cds
          Length = 3203

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 aaccacccgagccccccgcg 581
           ||||||||||||||||||||
Sbjct: 201 aaccacccgagccccccgcg 182
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 373      ttagttgtttgtttttgctt 392
                ||||||||||||||||||||
Sbjct: 21778784 ttagttgtttgtttttgctt 21778765
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>gb|AC022692.11| Homo sapiens chromosome 15, clone RP11-530L17, complete sequence
          Length = 173604

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   agctttagttgtttgttttt 388
             ||||||||||||||||||||
Sbjct: 42448 agctttagttgtttgttttt 42467
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>gb|AC012320.6|AC012320 Homo sapiens chromosome 16 clone RP11-280N16, complete sequence
          Length = 189840

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 253    taactatcagatctcttgggactt 276
              |||||||||||||||||| |||||
Sbjct: 118382 taactatcagatctcttgagactt 118359
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>gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complete sequence
          Length = 132626

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    actagcaaatctacatttaa 109
             ||||||||||||||||||||
Sbjct: 51775 actagcaaatctacatttaa 51794
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>gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, complete sequence
          Length = 157793

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 289    tagcagtgacaactcacactgagc 312
              ||||||||||| ||||||||||||
Sbjct: 155856 tagcagtgacagctcacactgagc 155833
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>gb|AC105036.14| Homo sapiens chromosome 15, clone CTD-2323K18, complete sequence
          Length = 144333

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 567    cccgagccccccgcggctcc 586
              ||||||||||||||||||||
Sbjct: 118563 cccgagccccccgcggctcc 118582
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>dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0610D01
          Length = 146418

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ttagttgtttgtttttgctt 392
             ||||||||||||||||||||
Sbjct: 36865 ttagttgtttgtttttgctt 36846
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>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0006A22
          Length = 190690

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  ttagttgtttgtttttgctt 392
            ||||||||||||||||||||
Sbjct: 1269 ttagttgtttgtttttgctt 1250
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>dbj|AB097117.1| Thermus thermophilus genes for alpha-aminoadipate aminotransferase,
           hypothetical protein, complete and partial sequence
          Length = 1437

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 661 ggaggcggcggaagccgcgg 680
           ||||||||||||||||||||
Sbjct: 264 ggaggcggcggaagccgcgg 283
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>gb|BC070710.1| Xenopus laevis Myc binding protein Xmax2, mRNA (cDNA clone MGC:83462
            IMAGE:6643884), complete cds
          Length = 3770

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 384  tttttgcttccaatttcctttctc 407
            ||||| ||||||||||||||||||
Sbjct: 2069 tttttccttccaatttcctttctc 2046
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>ref|XM_318505.2| Anopheles gambiae str. PEST ENSANGP00000021750
           (ENSANGG00000019261), partial mRNA
          Length = 762

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 423 tcttccaatctctcaatctc 442
           ||||||||||||||||||||
Sbjct: 518 tcttccaatctctcaatctc 499
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>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence
          Length = 195874

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    ttgtttgtttttgcttccaa 396
              ||||||||||||||||||||
Sbjct: 189291 ttgtttgtttttgcttccaa 189310
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>gb|AF152491.1|AF152491 Homo sapiens protocadherin beta 12 (PCDH-beta12) mRNA, complete cds
          Length = 2388

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 aaccacccgagccccccgcg 581
           ||||||||||||||||||||
Sbjct: 201 aaccacccgagccccccgcg 182
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>gb|AC005752.1|AC005752 Homo sapiens chromosome 5, BAC clone 182a8 (LBNL H161), complete
             sequence
          Length = 101072

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   aaccacccgagccccccgcg 581
             ||||||||||||||||||||
Sbjct: 80691 aaccacccgagccccccgcg 80710
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>emb|BX296531.5| Mouse DNA sequence from clone RP24-82I9 on chromosome 2, complete
            sequence
          Length = 24885

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 372  tttagttgtttgtttttgct 391
            ||||||||||||||||||||
Sbjct: 8881 tttagttgtttgtttttgct 8862
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 661   ggaggcggcggaagccgcgg 680
             ||||||||||||||||||||
Sbjct: 40626 ggaggcggcggaagccgcgg 40607
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>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   ttgtttgtttttgcttccaa 396
             ||||||||||||||||||||
Sbjct: 96871 ttgtttgtttttgcttccaa 96852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,655,874
Number of Sequences: 3902068
Number of extensions: 6655874
Number of successful extensions: 133693
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133344
Number of HSP's gapped (non-prelim): 346
length of query: 697
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 674
effective length of database: 17,143,297,704
effective search space: 11554582652496
effective search space used: 11554582652496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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