>SPSE_BACSU (P39625) Spore coat polysaccharide biosynthesis protein spsE|
          Length = 373

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 65  HCILYLPSQNWQKLGN*VPSQSSAVRLEITLLSMFPTGASCWNEKEEHPVDMPCLAKKTS 244
           HC+   P+          P + S + +   L + FP     +++  EHP + PC A +  
Sbjct: 180 HCVAKYPA----------PPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAVRLG 229

Query: 245 TKFCEK 262
            K  EK
Sbjct: 230 AKLIEK 235

>FLGE_BORBU (Q44767) Flagellar hook protein flgE|
          Length = 442

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 204 NIQSICLALQKKPQQSSVRRLI*SLNLDFKLLLAHEYCNRLTRGRRILV*QRSMLSSFGT 383
           +I+ + + +  K    S + +  + NLD +L L  E  N     R   V  +S+  SFG 
Sbjct: 154 DIEDLIIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGANPADIARGTWVVNKSLYDSFGN 213

Query: 384 SSSIKCR--QDLN 416
            S ++ R  +DLN
Sbjct: 214 VSVLELRVVKDLN 226

>IF2_LEGPL (Q5WT36) Translation initiation factor IF-2|
          Length = 868

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 146 EITLLSMFPTGASCWNEKEEHPVDMPCLAKKTSTKFCEKIN 268
           EIT++S      S   E EEHPV  P  A   + K  EKIN
Sbjct: 125 EITVVSEVSADTSELKETEEHPVIEPVAALDETVKEEEKIN 165

>GLNE_NEIMA (Q9JX72) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 896

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 215 RLDVPPFHSS-MTRLL--GTWKEALFLA*LQMIEKELSFQAFANFEMASTEYNE 63
           RLD    HS  + R L  G  K  +FL  L  +  E  FQAFA+++    E NE
Sbjct: 5   RLDTARHHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQAFADWDKIRAEENE 58

>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron|
           regulatory protein 1) (IRP1) (Ferritin repressor
           protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate
           hydro-lyase) (Aconitase)
          Length = 889

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 107 QAFANFEMASTEYNEHSCFIYSNV*F 30
           Q F  F++A   +N+H  FIY N  F
Sbjct: 397 QGFKGFQVAPEHHNDHKTFIYDNTEF 422

>PUR4_CAEEL (Q19311) Probable phosphoribosylformylglycinamidine synthase (EC|
           6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide
           ribotide amidotransferase) (FGARAT) (Formylglycinamide
           ribotide synthetase)
          Length = 1343

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +2

Query: 80  LPSQNWQKLGN*VPSQSSAVRLEITLLSMFPTGASCWNEKEEHPVDMPCLAKKTSTKFCE 259
           L S NW+KL              +TLLS  P   S W E + HP            +  +
Sbjct: 50  LISSNWEKL--------------VTLLSHSPFETSVWKESQLHP------------EHGK 83

Query: 260 KINLKLKSGLQTPACS*IL 316
            I +  ++ ++T AC+ IL
Sbjct: 84  NIEIGPRTAVKTAACTNIL 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,395,037
Number of Sequences: 219361
Number of extensions: 1414258
Number of successful extensions: 3327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3327
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)