ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PA2G4_HUMAN (Q9UQ80) Proliferation-associated protein 2G4 (Cell ... 95 1e-19
2PA2G4_MOUSE (P50580) Proliferation-associated protein 2G4 (Proli... 95 2e-19
3CDB4_SCHPO (Q09184) Curved DNA-binding protein (42 kDa protein) 49 1e-05
4ARX1_SCHPO (O60180) Probable metalloprotease arx1 (EC 3.-.-.-) (... 38 0.018
5AMPM_METJA (Q58725) Methionine aminopeptidase (EC 3.4.11.18) (MA... 37 0.040
6AMPM2_ENCIN (Q6XMH7) Methionine aminopeptidase 2 (EC 3.4.11.18) ... 31 2.9
7AMPM2_YEAST (P38174) Methionine aminopeptidase 2 (EC 3.4.11.18) ... 31 2.9
8AMP2B_ARATH (Q56Y85) Methionine aminopeptidase 2B (EC 3.4.11.18)... 30 3.8
9GUNB_NEOPA (Q12647) Endoglucanase B precursor (EC 3.2.1.4) (Endo... 30 6.4
10ARX1_YARLI (Q6CCY2) Probable metalloprotease ARX1 (EC 3.-.-.-) (... 29 8.4

>PA2G4_HUMAN (Q9UQ80) Proliferation-associated protein 2G4 (Cell cycle protein|
           p38-2G4 homolog) (hG4-1) (ErbB3-binding protein 1)
          Length = 393

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = -1

Query: 576 FPIMPFTARALE-EKRARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFTVLLMPNGSDK 400
           F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK+G+ VA  KFTVLLMPNG  +
Sbjct: 272 FDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMR 331

Query: 399 ITSHPLQ-QLEPSKSIEDDAEIKAWLALGTKSXXXXXXXXXXXXXGDAAEAAEPME 235
           ITS P +  L  S+    DAE+KA L                    + A + E +E
Sbjct: 332 ITSGPFEPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLE 387



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>PA2G4_MOUSE (P50580) Proliferation-associated protein 2G4|
           (Proliferation-associated protein 1) (Protein p38-2G4)
           (Mpp1) (IRES-specific cellular trans-acting factor 45
           kDa) (ITAF45)
          Length = 393

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = -1

Query: 576 FPIMPFTARALE-EKRARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFTVLLMPNGSDK 400
           F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK+G+ VA  KFTVLLMPNG  +
Sbjct: 272 FDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMR 331

Query: 399 ITSHPLQ-QLEPSKSIEDDAEIKAWLALGTKSXXXXXXXXXXXXXGDAAEAAEPME 235
           ITS P +  L  S+    DAE+KA L                    + A + E +E
Sbjct: 332 ITSGPFEPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTVENATSGETLE 387



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>CDB4_SCHPO (Q09184) Curved DNA-binding protein (42 kDa protein)|
          Length = 381

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
 Frame = -1

Query: 576 FPIMPFTARALE-EKRARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFTVLLMPNGSDK 400
           F   PF+ R +  + R  +GL EC +H+LL PY VL +K G +VA    T+ L   G+  
Sbjct: 275 FGPFPFSTRNISFDSRTNMGLNECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTII 334

Query: 399 IT-SHPLQQLEPSKSIEDDAEIKAWL 325
           ++ S P +    S    +D EI A L
Sbjct: 335 LSDSEPKEDFIKSDKKVEDPEIVALL 360



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>ARX1_SCHPO (O60180) Probable metalloprotease arx1 (EC 3.-.-.-) (Associated|
           with ribosomal export complex protein 1)
          Length = 417

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -1

Query: 570 IMPFTARALEEKRARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFTVLLMPNGSDKI-- 397
           + PF   +L  +R  LGL E  +  +L P PVL     +++A  + TV+  PN S  +  
Sbjct: 318 VFPFHFGSLSSERNLLGLRELTDRHILVPMPVLISSPSNVIAREELTVITQPNPSSDLLC 377

Query: 396 --TSHPLQQLEPSKSIEDDAE 340
                P   ++   S+ED  +
Sbjct: 378 LTVPTPPSYVKSDFSLEDGTD 398



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>AMPM_METJA (Q58725) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase|
           M)
          Length = 294

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 576 FPIMPFTAR-ALEEKRARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFTVLLMPNGSDK 400
           +P +PF  R  L+ +  RL L   +    +  YP+L E++  +V   + T+L+  NG + 
Sbjct: 232 YPYLPFAERWVLKNESERLALNSLIRASCIYGYPILKERENGIVGQAEHTILITENGVEI 291

Query: 399 IT 394
            T
Sbjct: 292 TT 293



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>AMPM2_ENCIN (Q6XMH7) Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2)|
           (Peptidase M 2) (MetAP2) (MAP-2)
          Length = 358

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 576 FPIMPFTARALEEKR-ARLGLVECMN----HELLQPYPVLHEKQGDLVAHIKFTVLLMPN 412
           F  +PF+ R L+       G ++ +N      L  PYP L++  G  VA  + TV L  N
Sbjct: 288 FGTLPFSPRHLDHYNLVEGGSLKSVNLLTMMGLFTPYPPLNDIDGSKVAQFEHTVYLSEN 347

Query: 411 GSDKIT 394
           G + +T
Sbjct: 348 GKEILT 353



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>AMPM2_YEAST (P38174) Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2)|
           (Peptidase M 2)
          Length = 421

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 576 FPIMPFTARALE---EKRARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFTVLL 421
           F  +PF  R L+   +++    L   + H L+Q YP L++  G   A  + T+LL
Sbjct: 353 FGTLPFCRRYLDRLGQEKYLFALNNLVRHGLVQDYPPLNDIPGSYTAQFEHTILL 407



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>AMP2B_ARATH (Q56Y85) Methionine aminopeptidase 2B (EC 3.4.11.18) (MetAP 2B)|
           (MAP 2B) (Peptidase M 2B)
          Length = 439

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 576 FPIMPFTARALE---EKRARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFTVLLMP 415
           F  + F  R L+   E +  + L    +  ++QPYP L + +G  V+  + T+LL P
Sbjct: 371 FSTLAFCRRYLDRIGETKYLMALKNLCDSGIVQPYPPLCDVKGSYVSQFEHTILLRP 427



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>GUNB_NEOPA (Q12647) Endoglucanase B precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase B) (Cellulase B)
          Length = 473

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
 Frame = +2

Query: 368 GSNCCSGCDVILSDPFGINNTVNLMWA--------TRSPCFSWRTGYGC 490
           G +CC+GC+V  +D  G     N  W         T   C+S + GY C
Sbjct: 398 GYSCCNGCEVEYTDSDGEWGVENGNWCGIKSSCSNTSRICWSEKLGYPC 446



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>ARX1_YARLI (Q6CCY2) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated|
           with ribosomal export complex protein 1)
          Length = 484

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 570 IMPFTARALEEK--RARLGLVECMNHELLQPYPVLHEKQGDLVAHIKFT 430
           + PF    +E    +ARLGL E + H++L P PV   K   L A  +F+
Sbjct: 346 VYPFKLSHVESNVAKARLGLGEILAHQILVPIPVKVAKFVPLAALYEFS 394


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,250,915
Number of Sequences: 219361
Number of extensions: 1453722
Number of successful extensions: 3456
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3456
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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