ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23o23 |
|---|---|
| Clone Library Name | barley_pub |
>YF51_SCHPO (O14127) Hypothetical protein C3C7.01c in chromosome I| Length = 611 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/49 (48%), Positives = 33/49 (67%) Frame = -1 Query: 689 ALKGDLVRYGRQTLPGLIKDGMSAISRYYLNNFHDGVRQDALDLISGYY 543 ALKGD+ R+G +T+ G KD ++ RY LNNF DG+ QD+ DL G + Sbjct: 452 ALKGDVTRHGTRTIFGAFKDLLNCFRRYILNNFFDGMLQDSYDLGLGVF 500
>RSD1_YEAST (P32368) Recessive suppressor of secretory defect| Length = 623 Score = 50.1 bits (118), Expect = 6e-06 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Frame = -1 Query: 689 ALKGDLVRYGRQTLPGLIKDGMSAISRYYLNNFHDGVRQDALDLISGYYTVSKSS--SPF 516 ALK D R G++T G D +++ SRYY NN+ DG RQD+ DL G + +S SPF Sbjct: 457 ALKTDFTRTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLGGFRPHTASIKSPF 516 Query: 515 QIIGFESAPYLPVASAXXXXXXXXXTFTLSQVGRSAQHLISSIIFAGLTAGVAALVK--- 345 +P+ F S+++L + FAG + +A K Sbjct: 517 PDRRPVYIQLIPMIICAALTVLGATIFFPKDRFTSSKNL---LYFAGASIVLALSTKFMF 573 Query: 344 ANGKQLCSRPRL 309 NG Q + P+L Sbjct: 574 KNGIQFVNWPKL 585
>SYJ1_SCHPO (O43001) Synaptojanin homolog 1 (EC 3.1.3.36)| (Inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1076 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = -1 Query: 689 ALKGDLVRYGRQTLPGLIKDGMSAISRYYLNNFHDGVRQDALDLISG 549 ALK R G+ ++ G + D ++ R Y+NNF D RQ+ +DL+ G Sbjct: 477 ALKSSFTRKGKLSIAGALNDLSKSVGRMYINNFQDKGRQETIDLLLG 523
>YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 intergenic| region Length = 1183 Score = 38.5 bits (88), Expect = 0.020 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -1 Query: 689 ALKGDLVRYGRQTLPGLIKDGMSAISRYYLNNFHDGVRQDALDLISG 549 ALK R G+ + G + D ++SR Y+NNF D +Q +D + G Sbjct: 510 ALKSSYSRKGKMSFSGALSDATKSVSRMYINNFVDKGKQQNIDTLLG 556
>FIG4_YEAST (P42837) Polyphosphoinositide phosphatase (EC 3.1.3.-)| (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase) (Factor-induced gene 4) Length = 879 Score = 35.0 bits (79), Expect = 0.22 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = -1 Query: 635 KDGMSAISRYYLNNFHDGVRQDALDLISGYYT 540 +D + +I R+Y N+F D RQDA++L G+Y+ Sbjct: 549 RDMIESIKRFYSNSFVDAQRQDAINLFLGHYS 580
>SAC3_MOUSE (Q91WF7) SAC domain-containing protein 3| Length = 907 Score = 34.3 bits (77), Expect = 0.37 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -1 Query: 635 KDGMSAISRYYLNNFHDGVRQDALDLISGYY 543 KD M +SRYY N F D RQD+++L G + Sbjct: 568 KDIMQTLSRYYSNAFSDADRQDSINLFLGVF 598
>SAC3_HUMAN (Q92562) SAC domain-containing protein 3| Length = 907 Score = 34.3 bits (77), Expect = 0.37 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -1 Query: 635 KDGMSAISRYYLNNFHDGVRQDALDLISGYY 543 KD M +SRYY N F D RQD+++L G + Sbjct: 568 KDIMQTLSRYYSNAFSDADRQDSINLFLGVF 598
>SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1434 Score = 33.5 bits (75), Expect = 0.63 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -1 Query: 644 GLIKDGMSAISRYYLNNFHDGVRQDALDLI 555 G +KDG ++SR +NF DGV+Q+A+ L+ Sbjct: 455 GKLKDGARSMSRTIQSNFFDGVKQEAIKLL 484
>SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 33.5 bits (75), Expect = 0.63 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -1 Query: 644 GLIKDGMSAISRYYLNNFHDGVRQDALDLI 555 G +KDG ++SR +NF DGV+Q+A+ L+ Sbjct: 455 GKLKDGARSMSRTIQSNFFDGVKQEAIKLL 484
>SYNJ2_HUMAN (O15056) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 33.5 bits (75), Expect = 0.63 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -1 Query: 644 GLIKDGMSAISRYYLNNFHDGVRQDALDLI 555 G +KDG ++SR +NF DGV+Q+A+ L+ Sbjct: 455 GKLKDGARSMSRTIQSNFFDGVKQEAIKLL 484
>SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) (p150) (Fragment) Length = 1324 Score = 31.6 bits (70), Expect = 2.4 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 638 IKDGMSAISRYYLNNFHDGVRQDALDLI 555 +KDG ++SR NNF D +Q+A+D++ Sbjct: 452 LKDGARSVSRTIQNNFFDSSKQEAIDVL 479
>GAS6_HUMAN (Q14393) Growth-arrest-specific protein 6 precursor (GAS-6)| Length = 721 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 8/61 (13%) Frame = +3 Query: 312 SRSRAELLSIC------FHQGCHSGGQTSEDNG--RDEVLCAPSNLTKSESCDSDPTNYD 467 S+ L IC FH CHSG + S D +D CA S C + P +Y Sbjct: 161 SQENGGCLQICHNKPGSFHCSCHSGFELSSDGRTCQDIDECADSEACGEARCKNLPGSYS 220 Query: 468 C 470 C Sbjct: 221 C 221
>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1575 Score = 30.4 bits (67), Expect = 5.3 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -1 Query: 638 IKDGMSAISRYYLNNFHDGVRQDALDLI 555 +KDG +++R NNF D +Q+A+D++ Sbjct: 452 LKDGARSVTRTIQNNFFDSSKQEAIDVL 479
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 30.4 bits (67), Expect = 5.3 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -1 Query: 638 IKDGMSAISRYYLNNFHDGVRQDALDLI 555 +KDG +++R NNF D +Q+A+D++ Sbjct: 452 LKDGARSVTRTIQNNFFDSSKQEAIDVL 479
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 30.4 bits (67), Expect = 5.3 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -1 Query: 638 IKDGMSAISRYYLNNFHDGVRQDALDLI 555 +KDG +++R NNF D +Q+A+D++ Sbjct: 452 LKDGARSVTRTIQNNFFDSSKQEAIDVL 479
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 30.4 bits (67), Expect = 5.3 Identities = 24/74 (32%), Positives = 34/74 (45%) Frame = +3 Query: 228 LHIHSDSNNKALRTGQEKRGRKLDQTA*SRSRAELLSICFHQGCHSGGQTSEDNGRDEVL 407 L +HSDS K +T RGR ++T+ SRSR+ S S TS +G Sbjct: 602 LIVHSDSKTKT-KTRSRSRGRARNKTSKSRSRSSSSS------SSSSSSTSSSSGGSSSS 654 Query: 408 CAPSNLTKSESCDS 449 + S+ + S S S Sbjct: 655 GSSSSRSSSSSSSS 668
>ZN302_HUMAN (Q9NR11) Zinc finger protein 302 (ZNF135-like) (ZNF140-like)| Length = 478 Score = 30.0 bits (66), Expect = 6.9 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 336 SICFHQGCHSGGQTSEDNGRDEVLCAPSNLTKSESCDSDPTNYDC*RHRKIWCRF 500 S+ HQ H+G + E + C S+LT+ + S Y+C + K++ F Sbjct: 406 SLIHHQKSHTGEKPYECRECGKAFCCSSHLTQHQRIHSMKKKYECNKCLKVFSSF 460
>OVOL2_HUMAN (Q9BRP0) Transcription factor Ovo-like 2 (hOvo2) (Zinc finger| protein 339) Length = 275 Score = 30.0 bits (66), Expect = 6.9 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Frame = -3 Query: 573 RCS-RSYQWLLHGQQKQFSFSNHRI*ICTISSCGVSNHSWWD---HCHNFHS*SSWTERT 406 RCS S+ +HG Q+Q+++ R + CG + + D H ++ H SS+ ++T Sbjct: 187 RCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHPGSSFLKKT 246 Query: 405 TPHLVHYLR 379 + L L+ Sbjct: 247 SKKLAALLQ 255
>A1AT_CYPCA (P32759) Alpha-1-antitrypsin homolog precursor| Length = 372 Score = 29.6 bits (65), Expect = 9.1 Identities = 12/40 (30%), Positives = 27/40 (67%) Frame = -1 Query: 644 GLIKDGMSAISRYYLNNFHDGVRQDALDLISGYYTVSKSS 525 G +K+ +ISR++L N+HD + + ++DL ++++ +S Sbjct: 237 GKMKELEESISRHHLKNWHDKLFRSSVDLFMPKFSITATS 276
>FOLR1_MOUSE (P35846) Folate receptor alpha precursor (FR-alpha) (Folate| receptor 1) (Folate-binding protein 1) Length = 255 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 300 QTA*SRSRAELLSICFHQGCHSGGQTSEDNGRDEVLCAPSNLTKSESCDSDPTNYD 467 Q+ +R+R ELL++C H EDN D+ C+P K+ SC S T+ + Sbjct: 21 QSRATRARTELLNVCMDAKHHKEKPGPEDNLHDQ--CSP---WKTNSCCSTNTSQE 71
>ZN248_HUMAN (Q8NDW4) Zinc finger protein 248| Length = 579 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/60 (26%), Positives = 27/60 (45%) Frame = +3 Query: 348 HQGCHSGGQTSEDNGRDEVLCAPSNLTKSESCDSDPTNYDC*RHRKIWCRFKSDDLKRRT 527 HQ H+G + E + C SNLT+ + + Y+C K +C + + +RT Sbjct: 426 HQRTHTGEKPYECKQCGKTFCVKSNLTEHQRTHTGEKPYECNACGKSFCHRSALTVHQRT 485
>PININ_BOVIN (P79122) Pinin| Length = 703 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/78 (26%), Positives = 36/78 (46%) Frame = +3 Query: 228 LHIHSDSNNKALRTGQEKRGRKLDQTA*SRSRAELLSICFHQGCHSGGQTSEDNGRDEVL 407 L +HS+S + +T RGR ++T+ SRSR+ S S +S +G Sbjct: 559 LTVHSESKYET-KTRSRSRGRARNRTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR 617 Query: 408 CAPSNLTKSESCDSDPTN 461 + S+ + S S D ++ Sbjct: 618 TSSSSSSTSGSSSRDSSS 635 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,168,195 Number of Sequences: 219361 Number of extensions: 1886698 Number of successful extensions: 4649 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4417 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4648 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
