ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23o22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
2dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
3dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
4dbj|AK099729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
5dbj|AK099940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
6dbj|AK099512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
7dbj|AK066664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
8dbj|AK065642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
9dbj|AK059995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
10gb|AY596530.1| Saccharum officinarum clone SCEPLR1051A06, comple... 58 1e-05
11gb|AY107895.1| Zea mays PCO072867 mRNA sequence 48 0.010
12gb|BT016610.1| Zea mays clone Contig443 mRNA sequence 40 2.5
13emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 2.5
14emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast ... 40 2.5
15gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.8
16gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's H... 38 9.8
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.8
18gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p... 38 9.8
19gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p... 38 9.8
20gb|AC122289.2| Mus musculus BAC clone RP23-254F12 from 3, comple... 38 9.8
21emb|AL135788.11| Human DNA sequence from clone RP11-352G21 on ch... 38 9.8
22gb|AC091699.6| Homo sapiens chromosome 10 clone RP11-296D9, comp... 38 9.8
23gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, comp... 38 9.8
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
25gb|AC007878.2| Homo sapiens BAC clone RP11-236P2 from 2, complet... 38 9.8
26gb|AC116817.9| Mus musculus chromosome 1, clone RP24-357I7, comp... 38 9.8
27emb|AL935203.12| Zebrafish DNA sequence from clone CH211-256A21 ... 38 9.8
28gb|AC147448.2| Gallus gallus BAC clone CH261-2D18 from chromosom... 38 9.8
29dbj|AB248053.1| Anemone canadensis chloroplast DNA, 3'trnK intro... 38 9.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                           
Query: 5       ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
               |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 5046975 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 5047032

                           
Query: 65      atatacaactac 76
               ||||||||||||
Sbjct: 5047033 atatacaactac 5047044
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>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1147_D11
          Length = 138444

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 6013 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 6070

                        
Query: 65   atatacaactac 76
            ||||||||||||
Sbjct: 6071 atatacaactac 6082
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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1172G12
          Length = 171974

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                         
Query: 5     ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
             |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 89089 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 89146

                         
Query: 65    atatacaactac 76
             ||||||||||||
Sbjct: 89147 atatacaactac 89158
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>dbj|AK099729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089L07, full
            insert sequence
          Length = 2519

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 2495 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 2438

                        
Query: 65   atatacaactac 76
            ||||||||||||
Sbjct: 2437 atatacaactac 2426
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>dbj|AK099940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120N16, full
            insert sequence
          Length = 2140

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 2114 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 2057

                        
Query: 65   atatacaactac 76
            ||||||||||||
Sbjct: 2056 atatacaactac 2045
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>dbj|AK099512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I07, full
            insert sequence
          Length = 3180

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 3155 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 3098

                        
Query: 65   atatacaactac 76
            ||||||||||||
Sbjct: 3097 atatacaactac 3086
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>dbj|AK066664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072I01, full
            insert sequence
          Length = 2402

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 2376 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 2319

                        
Query: 65   atatacaactac 76
            ||||||||||||
Sbjct: 2318 atatacaactac 2307
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>dbj|AK065642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H08, full
            insert sequence
          Length = 2769

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 2744 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 2687

                        
Query: 65   atatacaactac 76
            ||||||||||||
Sbjct: 2686 atatacaactac 2675
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>dbj|AK059995.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F01, full
            insert sequence
          Length = 1094

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 64/72 (88%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 1068 ctatgtataa-ttttacactgtattctgttgtc-aggctattctcctgctgcctctttta 1011

                        
Query: 65   atatacaactac 76
            ||||||||||||
Sbjct: 1010 atatacaactac 999
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>gb|AY596530.1| Saccharum officinarum clone SCEPLR1051A06, complete sequence
          Length = 2542

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 63/72 (87%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctatgtataaattttacactgtattctgttttgtnggctattctccagcggcctccttta 64
            |||||||||| ||||||||||||||||||| |   ||||||||||| || ||||| ||||
Sbjct: 2077 ctatgtataa-ttttacactgtattctgttgt-caggctattctcctgctgcctctttta 2020

                        
Query: 65   atatacaactac 76
            ||||||| ||||
Sbjct: 2019 atatacagctac 2008
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>gb|AY107895.1| Zea mays PCO072867 mRNA sequence
          Length = 788

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 54/63 (85%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                       
Query: 14  aattttacactgtattctgttttgtnggctattctccagcggcctcctttaatatacaac 73
           ||||||||||||||| ||||| |   ||||||||||| || ||||| ||||||||||| |
Sbjct: 740 aattttacactgtatcctgttgtc-aggctattctcctgctgcctcttttaatatacagc 682

              
Query: 74  tac 76
           |||
Sbjct: 681 tac 679
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>gb|BT016610.1| Zea mays clone Contig443 mRNA sequence
          Length = 1399

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 53/63 (84%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                        
Query: 14   aattttacactgtattctgttttgtnggctattctccagcggcctcctttaatatacaac 73
            ||||||||||||||| ||||| |   ||||||||||| || ||||  ||||||||||| |
Sbjct: 1330 aattttacactgtatcctgttgt-caggctattctcctgctgccttttttaatatacagc 1272

               
Query: 74   tac 76
            |||
Sbjct: 1271 tac 1269
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    attttacactgtattctgtt 34
             ||||||||||||||||||||
Sbjct: 37246 attttacactgtattctgtt 37227
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>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome
          Length = 150725

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    ctatgtataaattttacact 24
            ||||||||||||||||||||
Sbjct: 1610 ctatgtataaattttacact 1629
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>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0004M10, complete sequence
          Length = 152423

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     tctatgtataaattttaca 22
             |||||||||||||||||||
Sbjct: 81860 tctatgtataaattttaca 81878
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>gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 226439

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     tacactgtattctgttttg 37
              |||||||||||||||||||
Sbjct: 189875 tacactgtattctgttttg 189893
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 4        tctatgtataaattttaca 22
                |||||||||||||||||||
Sbjct: 15820060 tctatgtataaattttaca 15820078
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>gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p, complete sequence
          Length = 171051

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     tatgtataaattttacact 24
             |||||||||||||||||||
Sbjct: 66984 tatgtataaattttacact 67002
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>gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p, complete sequence
          Length = 172221

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 6    tatgtataaattttacact 24
            |||||||||||||||||||
Sbjct: 2773 tatgtataaattttacact 2791
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>gb|AC122289.2| Mus musculus BAC clone RP23-254F12 from 3, complete sequence
          Length = 210708

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 8     tgtataaattttacactgtattctgtt 34
             ||||||||| ||||| |||||||||||
Sbjct: 67854 tgtataaatgttacattgtattctgtt 67828
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>emb|AL135788.11| Human DNA sequence from clone RP11-352G21 on chromosome 9p23-24.3,
             complete sequence
          Length = 96203

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    ggcctcctttaatatacaa 72
             |||||||||||||||||||
Sbjct: 57856 ggcctcctttaatatacaa 57874
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>gb|AC091699.6| Homo sapiens chromosome 10 clone RP11-296D9, complete sequence
          Length = 196856

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      gtataaattttacactgta 27
              |||||||||||||||||||
Sbjct: 162470 gtataaattttacactgta 162488
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>gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, complete sequence
          Length = 170834

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     gtataaattttacactgta 27
             |||||||||||||||||||
Sbjct: 46633 gtataaattttacactgta 46651
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 4        tctatgtataaattttaca 22
                |||||||||||||||||||
Sbjct: 15814594 tctatgtataaattttaca 15814612
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>gb|AC007878.2| Homo sapiens BAC clone RP11-236P2 from 2, complete sequence
          Length = 185134

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      gtataaattttacactgta 27
              |||||||||||||||||||
Sbjct: 162241 gtataaattttacactgta 162223
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>gb|AC116817.9| Mus musculus chromosome 1, clone RP24-357I7, complete sequence
          Length = 186439

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     gatctatgtataaatttta 20
             |||||||||||||||||||
Sbjct: 52252 gatctatgtataaatttta 52270
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>emb|AL935203.12| Zebrafish DNA sequence from clone CH211-256A21 in linkage group 25,
              complete sequence
          Length = 163572

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     attttacactgtattctgt 33
              |||||||||||||||||||
Sbjct: 107839 attttacactgtattctgt 107821
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>gb|AC147448.2| Gallus gallus BAC clone CH261-2D18 from chromosome unknown, complete
             sequence
          Length = 216522

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     tctatgtataaattttaca 22
             |||||||||||||||||||
Sbjct: 60900 tctatgtataaattttaca 60918
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>dbj|AB248053.1| Anemone canadensis chloroplast DNA, 3'trnK intron region,
           specimen_voucher: 040194 (Makino Herbarium, Tokyo
           Metropolitan Univ.)
          Length = 658

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 4   tctatgtataaattttaca 22
           |||||||||||||||||||
Sbjct: 613 tctatgtataaattttaca 595


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,161,644
Number of Sequences: 3902068
Number of extensions: 1161644
Number of successful extensions: 72785
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72624
Number of HSP's gapped (non-prelim): 150
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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