ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23o16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence Length = 202089 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 tataaggatttgtattttatta 321 |||||||||||||||||||||| Sbjct: 109604 tataaggatttgtattttatta 109625
>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24, complete sequence Length = 158366 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 350 tgtttgtaaagaggtgtgatga 371 |||||||||||||||||||||| Sbjct: 24315 tgtttgtaaagaggtgtgatga 24336
>ref|NM_025218.2| Homo sapiens UL16 binding protein 1 (ULBP1), mRNA Length = 3160 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 737 cttctcatcatcttcctctgc 757
>gb|AC166156.4| Mus musculus BAC clone RP24-274H19 from chromosome 3, complete sequence Length = 176294 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 471 gaagatacaacttttacttctgagt 495 |||||||||||| |||||||||||| Sbjct: 18230 gaagatacaactcttacttctgagt 18254
>gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosome 3, complete sequence Length = 230133 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 471 gaagatacaacttttacttctgagt 495 |||||||||||| |||||||||||| Sbjct: 102292 gaagatacaactcttacttctgagt 102316
>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence Length = 184128 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 atgagaaccacaagtttcttc 171 ||||||||||||||||||||| Sbjct: 85294 atgagaaccacaagtttcttc 85274
>gb|AF346595.1| Homo sapiens NKG2D ligand 1 (N2DL1) mRNA, partial cds Length = 705 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 664 cttctcatcatcttcctctgc 684
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence Length = 218079 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 atgagaaccacaagtttcttc 171 ||||||||||||||||||||| Sbjct: 184501 atgagaaccacaagtttcttc 184481
>emb|AL355497.14| Human DNA sequence from clone RP11-472G23 on chromosome 6 Contains the ULBP1 gene for UL16 binding protein 1, a basic transcription factor 3 (BTF3) pseudogene, a pseudogene similar to UL16 binding protein 1 (ULBP1), two retinoic acid early transcript 1 (RAET1L) pseudogenes, the gene for retinoic acid early transcript 1 (RAET1L), a prohibitin (PHB) pseudogene, the ULBP3 gene for UL16 binding protein 3, the 5' end of the PPP1R14C gene for PPP1R14C gene for protein phosphatase 1 regulatory (inhibitor) subunit 14C (KEPI NY-BR-81 CPI17-like), a novel gene and eight CpG islands, complete sequence Length = 215397 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 16198 cttctcatcatcttcctctgc 16218
>gb|AF425265.1| Homo sapiens UL16 binding protein 1 (ULBP1) mRNA, partial cds Length = 1449 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 681 cttctcatcatcttcctctgc 701
>gb|BC035416.1| Homo sapiens UL16 binding protein 1, mRNA (cDNA clone MGC:41778 IMAGE:4822311), complete cds Length = 3160 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 737 cttctcatcatcttcctctgc 757
>gb|AF346416.1| Homo sapiens retinoic acid early transcript 1 (RAET1I) mRNA, complete cds Length = 735 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 694 cttctcatcatcttcctctgc 714
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ttttacatgtgcacaacagaatact 74 ||||| ||||||||||||||||||| Sbjct: 279573 ttttatatgtgcacaacagaatact 279549
>gb|AF304377.1|AF304377 Homo sapiens ULBP1 protein mRNA, complete cds Length = 735 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 694 cttctcatcatcttcctctgc 714
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ttttacatgtgcacaacagaatact 74 ||||| ||||||||||||||||||| Sbjct: 309020 ttttatatgtgcacaacagaatact 308996
>gb|AC114808.4| Homo sapiens BAC clone RP11-1268F2 from 2, complete sequence Length = 176316 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aagaaaatgatagtaaaattg 240 ||||||||||||||||||||| Sbjct: 121481 aagaaaatgatagtaaaattg 121501
>gb|AC132146.3| Homo sapiens BAC clone RP11-1261A10 from 2, complete sequence Length = 106682 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aagaaaatgatagtaaaattg 240 ||||||||||||||||||||| Sbjct: 2082 aagaaaatgatagtaaaattg 2102
>gb|AC141889.4| Mus musculus BAC clone RP23-434P15 from chromosome 3, complete sequence Length = 186264 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 471 gaagatacaacttttacttctgagt 495 |||||||||||| |||||||||||| Sbjct: 168842 gaagatacaactcttacttctgagt 168866
>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence Length = 183268 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 ttttacatgtgcacaacagaatact 74 ||||| ||||||||||||||||||| Sbjct: 13622 ttttatatgtgcacaacagaatact 13598
>dbj|AP004920.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076c, complete sequence Length = 67145 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 gtttcttctcatcatcttcctctgc 188 |||||||||| |||||||||||||| Sbjct: 57639 gtttcttctcctcatcttcctctgc 57663
>dbj|AB052907.1| Homo sapiens mRNA for ALCAN-beta, complete cds Length = 735 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctgc 188 ||||||||||||||||||||| Sbjct: 694 cttctcatcatcttcctctgc 714
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tcgttctgaatgaagataca 479 |||||||||||||||||||| Sbjct: 683 tcgttctgaatgaagataca 664
>emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chromosome 13, complete sequence Length = 236130 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 taaggatttgtattttatta 321 |||||||||||||||||||| Sbjct: 20680 taaggatttgtattttatta 20661
>emb|AL590423.14| Human DNA sequence from clone RP13-364K23 on chromosome Xq22.1-23 Contains the DSIPI gene for delta sleep inducing peptide, immunoreactor (DIP, GILZ, TSC-22R), the 5' end of a novel gene and two CpG islands, complete sequence Length = 83167 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tttcttctcatcatcttcct 184 |||||||||||||||||||| Sbjct: 8593 tttcttctcatcatcttcct 8574
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a novel gene, complete sequence Length = 72540 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 gatttgtattttattaaatcaaaa 329 |||||||||||| ||||||||||| Sbjct: 54431 gatttgtattttcttaaatcaaaa 54408
>gb|AC069228.26| Homo sapiens 12 BAC RP11-315E17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142687 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 attaaatcaaaacgtgtata 337 |||||||||||||||||||| Sbjct: 85511 attaaatcaaaacgtgtata 85530
>emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D16 on chromosome 6q26-27 Contains part of the gene for smooth muscle cell associated protein 2 (SMAP2) or secreted modular calcium binding protein 2 (SMOC2) and two CpG islands, complete sequence Length = 110603 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gtttcttctcatcatcttcc 183 |||||||||||||||||||| Sbjct: 45074 gtttcttctcatcatcttcc 45093
>emb|CR394534.6| Zebrafish DNA sequence from clone CH211-276A17 in linkage group 6, complete sequence Length = 153370 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 agtataaggatttgtatttt 317 |||||||||||||||||||| Sbjct: 6003 agtataaggatttgtatttt 6022
>emb|AL954721.4| Zebrafish DNA sequence from clone BUSM1-119J18 in linkage group 20 Contains a novel gene for a protein with helix-loop-helix DNA-binding domain, a novel gene similar to rat KIDINS220 (kinase D-interacting substance of 220 kDa) and two CpG islands, complete sequence Length = 95798 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 atttgtattttattaaatca 326 |||||||||||||||||||| Sbjct: 17616 atttgtattttattaaatca 17597
>gb|AC154602.3| Mus musculus BAC clone RP23-343M11 from chromosome 17, complete sequence Length = 196564 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cacaagtttcttctcatcat 178 |||||||||||||||||||| Sbjct: 28324 cacaagtttcttctcatcat 28343
>gb|AC005171.3| Arabidopsis thaliana chromosome 2 clone T4E14 map mi310, complete sequence Length = 138181 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tgaagatacaacttttactt 489 |||||||||||||||||||| Sbjct: 32782 tgaagatacaacttttactt 32763
>gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Genome Systems Human BAC Library) complete sequence Length = 157981 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 agaaaaaggacccaacaagt 113 |||||||||||||||||||| Sbjct: 43396 agaaaaaggacccaacaagt 43377
>gb|U96409.1| Human Xp22 contig of 3 PACS (R7-39D12, R7-134G1, R7-185L21) from the Roswell Park Cancer Institute, complete sequence Length = 169465 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 aagaaaatgatagtaaaatt 239 |||||||||||||||||||| Sbjct: 98996 aagaaaatgatagtaaaatt 98977
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 tcatcatcttcctctgcacaatat 195 ||||||||||||| |||||||||| Sbjct: 19446951 tcatcatcttcctttgcacaatat 19446928
>gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome 17, complete sequence Length = 183027 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cacaagtttcttctcatcat 178 |||||||||||||||||||| Sbjct: 159115 cacaagtttcttctcatcat 159134
>ref|XM_226700.3| PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC294668), mRNA Length = 3765 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 aagatacaacttttacttctgagt 495 |||||||||||||||| ||||||| Sbjct: 116 aagatacaacttttacatctgagt 139
>gb|AC104058.4| Homo sapiens BAC clone RP13-513D10 from 2, complete sequence Length = 122230 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 atatattttattgaaagcta 268 |||||||||||||||||||| Sbjct: 43362 atatattttattgaaagcta 43343
>gb|AC007956.5|AC007956 Homo sapiens chromosome 14 clones CTD-3211F8 and RP11-173A8 containing KIAA0317 gene, complete cds; and unknown gene, complete sequence Length = 233738 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 aaggatttgtattttattaa 322 |||||||||||||||||||| Sbjct: 115090 aaggatttgtattttattaa 115109
>emb|BX548006.10| Zebrafish DNA sequence from clone DKEY-127P11, complete sequence Length = 158134 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctg 187 |||||||||||||||||||| Sbjct: 25473 cttctcatcatcttcctctg 25492
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 tcatcatcttcctctgcacaatat 195 ||||||||||||| |||||||||| Sbjct: 65360 tcatcatcttcctttgcacaatat 65337
>emb|BX927116.18| Zebrafish DNA sequence from clone DKEY-261D11 in linkage group 22, complete sequence Length = 155808 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctg 187 |||||||||||||||||||| Sbjct: 92555 cttctcatcatcttcctctg 92574
>emb|AL929274.7| Zebrafish DNA sequence from clone CH211-79M20 in linkage group 22, complete sequence Length = 169459 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cttctcatcatcttcctctg 187 |||||||||||||||||||| Sbjct: 56326 cttctcatcatcttcctctg 56345
>emb|CR376776.19| Zebrafish DNA sequence from clone CH211-13I23, complete sequence Length = 179675 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 atttgtattttattaaatca 326 |||||||||||||||||||| Sbjct: 148855 atttgtattttattaaatca 148836
>emb|AL772339.5| Zebrafish DNA sequence from clone CH211-139K23, complete sequence Length = 166809 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 agtataaggatttgtatttt 317 |||||||||||||||||||| Sbjct: 118742 agtataaggatttgtatttt 118723
>gb|AC132471.4| Mus musculus BAC clone RP23-106E17 from 10, complete sequence Length = 197822 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 catgtgcacaacagaatact 74 |||||||||||||||||||| Sbjct: 135024 catgtgcacaacagaatact 135043
>emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chromosome 4, complete sequence Length = 110623 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ttacatgtgcacaacagaat 71 |||||||||||||||||||| Sbjct: 85625 ttacatgtgcacaacagaat 85606 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,783,639 Number of Sequences: 3902068 Number of extensions: 6783639 Number of successful extensions: 162014 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 161832 Number of HSP's gapped (non-prelim): 182 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
