ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23o15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472868.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2100 Score = 426 bits (215), Expect = e-116 Identities = 410/473 (86%), Gaps = 4/473 (0%) Strand = Plus / Minus Query: 158 ccgttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgcca 217 ||||||||||||||||| |||||||| |||||||||| |||||| || |||| ||| Sbjct: 2081 ccgttctggatggctttgggcgactcggcttccttgatgtcagcg---tcggaggagccg 2025 Query: 218 ggaggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccg 277 |||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2024 ggaggcacgtcgaccgccggcgagcagttgaagaacccatgtggcatgagcatgaagccg 1965 Query: 278 atgcgttccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaat 337 |||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| Sbjct: 1964 atgcgttccactggcatgacaggccagtcctccagccttgggatatgggtgagcccaaac 1905 Query: 338 acataccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcc 397 ||||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||| Sbjct: 1904 acataccagagaacaatgtcagtttcctccaggggcctatccttcttgacccaggtagct 1845 Query: 398 aa-ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcg 456 || |||||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct: 1844 aagccctcgtggatacgtggattctgattggggaactcccctccagggaacacctcgtcg 1785 Query: 457 ctcttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttc 516 |||||||| | || ||||| || |||||||||| ||| || ||||| | |||||||| Sbjct: 1784 ctcttgtactgcgtgacccagagattgtgcttcaggaaacccgctctcctcagaaacttt 1725 Query: 517 gcctcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttggt 576 |||||||| ||||| | |||||||||||||||||||||||||| ||| | || ||||| Sbjct: 1724 gcctcgggtagagccagcggcaaacagtttgaaccaggcacgagcctgtagccggttggc 1665 Query: 577 tgtccggtacgatttacagccctcgtgttcctaacaatccaatgtcgcgcaga 629 || || |||||||| |||||||| |||||||| || |||||||| || ||||| Sbjct: 1664 tgcccagtacgattaacagcccttgtgttccttacgatccaatgccgtgcaga 1612
>dbj|AK105824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-D10, full insert sequence Length = 1660 Score = 426 bits (215), Expect = e-116 Identities = 410/473 (86%), Gaps = 4/473 (0%) Strand = Plus / Minus Query: 158 ccgttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgcca 217 ||||||||||||||||| |||||||| |||||||||| |||||| || |||| ||| Sbjct: 1359 ccgttctggatggctttgggcgactcggcttccttgatgtcagcg---tcggaggagccg 1303 Query: 218 ggaggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccg 277 |||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1302 ggaggcacgtcgaccgccggcgagcagttgaagaacccatgtggcatgagcatgaagccg 1243 Query: 278 atgcgttccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaat 337 |||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| Sbjct: 1242 atgcgttccactggcatgacaggccagtcctccagccttgggatatgggtgagcccaaac 1183 Query: 338 acataccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcc 397 ||||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||| Sbjct: 1182 acataccagagaacaatgtcagtttcctccaggggcctatccttcttgacccaggtagct 1123 Query: 398 aa-ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcg 456 || |||||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct: 1122 aagccctcgtggatacgtggattctgattggggaactcccctccagggaacacctcgtcg 1063 Query: 457 ctcttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttc 516 |||||||| | || ||||| || |||||||||| ||| || ||||| | |||||||| Sbjct: 1062 ctcttgtactgcgtgacccagagattgtgcttcaggaaacccgctctcctcagaaacttt 1003 Query: 517 gcctcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttggt 576 |||||||| ||||| | |||||||||||||||||||||||||| ||| | || ||||| Sbjct: 1002 gcctcgggtagagccagcggcaaacagtttgaaccaggcacgagcctgtagccggttggc 943 Query: 577 tgtccggtacgatttacagccctcgtgttcctaacaatccaatgtcgcgcaga 629 || || |||||||| |||||||| |||||||| || |||||||| || ||||| Sbjct: 942 tgcccagtacgattaacagcccttgtgttccttacgatccaatgccgtgcaga 890
>dbj|AK059867.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E02, full insert sequence Length = 1137 Score = 426 bits (215), Expect = e-116 Identities = 410/473 (86%), Gaps = 4/473 (0%) Strand = Plus / Minus Query: 158 ccgttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgcca 217 ||||||||||||||||| |||||||| |||||||||| |||||| || |||| ||| Sbjct: 853 ccgttctggatggctttgggcgactcggcttccttgatgtcagcg---tcggaggagccg 797 Query: 218 ggaggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccg 277 |||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 796 ggaggcacgtcgaccgccggcgagcagttgaagaacccatgtggcatgagcatgaagccg 737 Query: 278 atgcgttccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaat 337 |||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| Sbjct: 736 atgcgttccactggcatgacaggccagtcctccagccttgggatatgggtgagcccaaac 677 Query: 338 acataccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcc 397 ||||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||| Sbjct: 676 acataccagagaacaatgtcagtttcctccaggggcctatccttcttgacccaggtagct 617 Query: 398 aa-ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcg 456 || |||||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct: 616 aagccctcgtggatacgtggattctgattggggaactcccctccagggaacacctcgtcg 557 Query: 457 ctcttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttc 516 |||||||| | || ||||| || |||||||||| ||| || ||||| | |||||||| Sbjct: 556 ctcttgtactgcgtgacccagagattgtgcttcaggaaacccgctctcctcagaaacttt 497 Query: 517 gcctcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttggt 576 |||||||| ||||| | |||||||||||||||||||||||||| ||| | || ||||| Sbjct: 496 gcctcgggtagagccagcggcaaacagtttgaaccaggcacgagcctgtagccggttggc 437 Query: 577 tgtccggtacgatttacagccctcgtgttcctaacaatccaatgtcgcgcaga 629 || || |||||||| |||||||| |||||||| || |||||||| || ||||| Sbjct: 436 tgcccagtacgattaacagcccttgtgttccttacgatccaatgccgtgcaga 384
>dbj|AK119759.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F12, full insert sequence Length = 1680 Score = 410 bits (207), Expect = e-111 Identities = 408/473 (86%), Gaps = 4/473 (0%) Strand = Plus / Minus Query: 158 ccgttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgcca 217 ||||||||||||||||| |||||||| |||||||||| |||||| || |||| ||| Sbjct: 1540 ccgttctggatggctttgggcgactcggcttccttgatgtcagcg---tcggaggagccg 1484 Query: 218 ggaggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccg 277 |||||||| ||||| || |||||||||||| |||| |||||||||||||||||||||||| Sbjct: 1483 ggaggcacgtcgaccgccggcgagcagttgtagaacccatgtggcatgagcatgaagccg 1424 Query: 278 atgcgttccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaat 337 |||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||| Sbjct: 1423 atgcgttccactggcatgacaggccagccctccagccttgggatatgggtgagcccaaac 1364 Query: 338 acataccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcc 397 ||||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||| Sbjct: 1363 acataccagagaacaatgtcagtttcctccaggggcctatccttcttgacccaggtagct 1304 Query: 398 aa-ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcg 456 || |||||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct: 1303 aagccctcgtggatacgtggattctgattggggaactcccctccagggaacacctcgtcg 1244 Query: 457 ctcttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttc 516 |||||||| | || ||||| || |||||||||| ||| || ||||| | |||||||| Sbjct: 1243 ctcttgtactgcgtgacccagagattgtgcttcaggaaacccgctctcctcagaaacttt 1184 Query: 517 gcctcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttggt 576 |||||||| ||||| | |||||||||||||||||||||||||| ||| | || ||||| Sbjct: 1183 gcctcgggtagagccagcggcaaacagtttgaaccaggcacgagcctgtagccggttggc 1124 Query: 577 tgtccggtacgatttacagccctcgtgttcctaacaatccaatgtcgcgcaga 629 || || |||||||| |||||||| |||||||| || |||||||| || ||||| Sbjct: 1123 tgcccagtacgattaacagcccttgtgttccttacgatccaatgccgtgcaga 1071
>gb|BT018375.1| Zea mays clone EL01N0307A05.d mRNA sequence Length = 1568 Score = 250 bits (126), Expect = 5e-63 Identities = 345/416 (82%), Gaps = 4/416 (0%) Strand = Plus / Minus Query: 161 ttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgccagga 220 ||||||||||| || |||||||| |||||||||||||| || ||| || | || ||| Sbjct: 1268 ttctggatggccttgggcgactcggcttccttgacatccgc---atcggacgagctggga 1212 Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccgatg 280 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1211 ggcacgtcgaccgcaggcgagcagttgaagaatccatgtggcatgagcatgaagcctatg 1152 Query: 281 cgttccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaataca 340 | ||||| |||||||| ||||| ||||| ||||| ||||| |||||||| || || || Sbjct: 1151 tgctccaccggcatgactggccaatcttctagcctggggatatgggtgagcccgaacacg 1092 Query: 341 taccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcca-a 399 |||||||| || ||||| |||||||||| |||||||| | ||||||||| || | || | Sbjct: 1091 taccagagaacaatgtcggtttcctccagaggcctatcattcttgacccatgttggcaga 1032 Query: 400 ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcgctc 459 ||||| || | || |||||||||||||| |||||||||||||| ||| |||| | | | Sbjct: 1031 ccctcatggatgcgaggattctggttgggaaactcccctccagggaacatctcgccacgc 972 Query: 460 ttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttcgcc 519 |||||| | || ||||| ||||||||||||||||| || || || | ||||| |||||| Sbjct: 971 ttgtattgagtgacccagaggttgtgcttcaagaacccagccctcctcagaaatttcgcc 912 Query: 520 tcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttgg 575 || |||||||| || |||| ||||| |||||||| ||||| ||| | |||||||| Sbjct: 911 tcaggcagagccaagggcaggcagttcgaaccaggtacgagcctgtagccagttgg 856
>gb|AY103626.1| Zea mays PCO118120 mRNA sequence Length = 1642 Score = 250 bits (126), Expect = 5e-63 Identities = 345/416 (82%), Gaps = 4/416 (0%) Strand = Plus / Minus Query: 161 ttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgccagga 220 ||||||||||| || |||||||| |||||||||||||| || ||| || | || ||| Sbjct: 1397 ttctggatggccttgggcgactcggcttccttgacatccgc---atcggacgagctggga 1341 Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccgatg 280 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1340 ggcacgtcgaccgcaggcgagcagttgaagaatccatgtggcatgagcatgaagcctatg 1281 Query: 281 cgttccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaataca 340 | ||||| |||||||| ||||| ||||| ||||| ||||| |||||||| || || || Sbjct: 1280 tgctccaccggcatgactggccaatcttctagcctggggatatgggtgagcccgaacacg 1221 Query: 341 taccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcca-a 399 |||||||| || ||||| |||||||||| |||||||| | ||||||||| || | || | Sbjct: 1220 taccagagaacaatgtcggtttcctccagaggcctatcattcttgacccatgttggcaga 1161 Query: 400 ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcgctc 459 ||||| || | || |||||||||||||| |||||||||||||| ||| |||| | | | Sbjct: 1160 ccctcatggatgcgaggattctggttgggaaactcccctccagggaacatctcgccacgc 1101 Query: 460 ttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttcgcc 519 |||||| | || ||||| ||||||||||||||||| || || || | ||||| |||||| Sbjct: 1100 ttgtattgagtgacccagaggttgtgcttcaagaacccagccctcctcagaaatttcgcc 1041 Query: 520 tcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttgg 575 || |||||||| || |||| ||||| |||||||| ||||| ||| | |||||||| Sbjct: 1040 tcaggcagagccaaaggcaggcagttcgaaccaggtacgagcctgtagccagttgg 985
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence Length = 160155 Score = 210 bits (106), Expect = 4e-51 Identities = 230/270 (85%), Gaps = 1/270 (0%) Strand = Plus / Plus Query: 340 ataccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagccaa 399 ||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||| || Sbjct: 126728 ataccagagaacaatgtcagtttcctccaggggcctatccttcttgacccaggtagctaa 126787 Query: 400 -ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcgct 458 |||||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||||| Sbjct: 126788 gccctcgtggatacgtggattctgattggggaactcccctccagggaacacctcgtcgct 126847 Query: 459 cttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttcgc 518 |||||| | || ||||| || |||||||||| ||| || ||||| | |||||||| || Sbjct: 126848 cttgtactgcgtgacccagagattgtgcttcaggaaacccgctctcctcagaaactttgc 126907 Query: 519 ctcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttggttg 578 |||||| ||||| | |||||||||||||||||||||||||| ||| | || ||||| || Sbjct: 126908 ctcgggtagagccagcggcaaacagtttgaaccaggcacgagcctgtagccggttggctg 126967 Query: 579 tccggtacgatttacagccctcgtgttcct 608 || |||||||| |||||||| |||||||| Sbjct: 126968 cccagtacgattaacagcccttgtgttcct 126997 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 262 catgagcatgaagccgatgcgttccactggcatgaccggccagtcttccagccttgggat 321 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 126564 catgagcatgaagccgatgcgttccactggcatgacaggccagtcctccagccttgggat 126623 Query: 322 gtgggtgagtccaaatacatacc 344 |||||||| ||||| ||||||| Sbjct: 126624 atgggtgagcccaaacacatacc 126646 Score = 93.7 bits (47), Expect = 7e-16 Identities = 91/105 (86%), Gaps = 3/105 (2%) Strand = Plus / Plus Query: 158 ccgttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgcca 217 ||||||||||||||||| |||||||| |||||||||| |||||| || |||| ||| Sbjct: 126314 ccgttctggatggctttgggcgactcggcttccttgatgtcagcg---tcggaggagccg 126370 Query: 218 ggaggcacatcgacagcaggcgagcagttgaagaatccatgtggc 262 |||||||| ||||| || ||||||||||||||||| ||||||||| Sbjct: 126371 ggaggcacgtcgaccgccggcgagcagttgaagaacccatgtggc 126415
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 210 bits (106), Expect = 4e-51 Identities = 230/270 (85%), Gaps = 1/270 (0%) Strand = Plus / Plus Query: 340 ataccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagccaa 399 ||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||| || Sbjct: 23805816 ataccagagaacaatgtcagtttcctccaggggcctatccttcttgacccaggtagctaa 23805875 Query: 400 -ccctcgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcgct 458 |||||||| | |||||||||||| |||||||||||||||||||| ||| ||| ||||| Sbjct: 23805876 gccctcgtggatacgtggattctgattggggaactcccctccagggaacacctcgtcgct 23805935 Query: 459 cttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttcgc 518 |||||| | || ||||| || |||||||||| ||| || ||||| | |||||||| || Sbjct: 23805936 cttgtactgcgtgacccagagattgtgcttcaggaaacccgctctcctcagaaactttgc 23805995 Query: 519 ctcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttggttg 578 |||||| ||||| | |||||||||||||||||||||||||| ||| | || ||||| || Sbjct: 23805996 ctcgggtagagccagcggcaaacagtttgaaccaggcacgagcctgtagccggttggctg 23806055 Query: 579 tccggtacgatttacagccctcgtgttcct 608 || |||||||| |||||||| |||||||| Sbjct: 23806056 cccagtacgattaacagcccttgtgttcct 23806085 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 262 catgagcatgaagccgatgcgttccactggcatgaccggccagtcttccagccttgggat 321 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 23805652 catgagcatgaagccgatgcgttccactggcatgacaggccagtcctccagccttgggat 23805711 Query: 322 gtgggtgagtccaaatacatacc 344 |||||||| ||||| ||||||| Sbjct: 23805712 atgggtgagcccaaacacatacc 23805734 Score = 103 bits (52), Expect = 7e-19 Identities = 160/196 (81%) Strand = Plus / Plus Query: 412 cgtggattctggttggggaactcccctccaggaaacttctcatcgctcttgtatggtgtc 471 ||||| ||||| || || ||||| |||||||| || |||||||| | ||||||| ||| Sbjct: 2378075 cgtgggttctgattaggaaactctcctccagggtacatctcatcgtttttgtatgatgta 2378134 Query: 472 acccaaaggttgtgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagca 531 |||||||| || ||||| |||||||| ||||||| || || |||||||| ||||| || Sbjct: 2378135 acccaaagattatgctttaagaatccagctcttctcaggaatttcgcctcaggcagggcc 2378194 Query: 532 aatggcaaacagtttgaaccaggcacgagtctgaaaccagttggttgtccggtacgattt 591 || || | ||||||||||||||| | ||| || | || ||||||||||| ||||||||| Sbjct: 2378195 aacggaagacagtttgaaccaggtatgagcttgtagcctgttggttgtccagtacgattt 2378254 Query: 592 acagccctcgtgttcc 607 |||| ||| ||||||| Sbjct: 2378255 acagtccttgtgttcc 2378270 Score = 93.7 bits (47), Expect = 7e-16 Identities = 91/105 (86%), Gaps = 3/105 (2%) Strand = Plus / Plus Query: 158 ccgttctggatggctttaggcgactctgcttccttgacatcagcggcatcagaggtgcca 217 ||||||||||||||||| |||||||| |||||||||| |||||| || |||| ||| Sbjct: 23805402 ccgttctggatggctttgggcgactcggcttccttgatgtcagcg---tcggaggagccg 23805458 Query: 218 ggaggcacatcgacagcaggcgagcagttgaagaatccatgtggc 262 |||||||| ||||| || ||||||||||||||||| ||||||||| Sbjct: 23805459 ggaggcacgtcgaccgccggcgagcagttgaagaacccatgtggc 23805503 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 266 agcatgaagccgatgcgttccactggcatgaccggccagtcttccagccttggga 320 ||||||||||||||| ||||||||||||| || ||||||||||| |||||||||| Sbjct: 2377653 agcatgaagccgatgtgttccactggcattacaggccagtcttcgagccttggga 2377707 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 219 gaggcacatcgacagcaggcgagcagttgaagaatccatgtggc 262 ||||||| |||| ||||| ||||||| ||||||||||| |||| Sbjct: 2377450 gaggcacgtcgatcgcaggtgagcagtcgaagaatccatctggc 2377493
>ref|XM_471226.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2379 Score = 178 bits (90), Expect = 1e-41 Identities = 325/402 (80%), Gaps = 1/402 (0%) Strand = Plus / Minus Query: 219 gaggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccga 278 ||||||| |||| ||||| ||||||| ||||||||||| |||| | ||||||||||||| Sbjct: 2335 gaggcacgtcgatcgcaggtgagcagtcgaagaatccatctggcttcagcatgaagccga 2276 Query: 279 tgcgttccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaata 338 || ||||||||||||| || ||||||||||| |||||||||| ||||| | || || | Sbjct: 2275 tgtgttccactggcattacaggccagtcttcgagccttgggacatgggtaaccccgaaaa 2216 Query: 339 cataccagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcca 398 | |||||||| || |||| |||||||| | || |||||||| || ||||| || || | Sbjct: 2215 cgtaccagagaactatgttggtttcctctagggatctatcctgttttacccatgttgcta 2156 Query: 399 accct-cgtgaagacgtggattctggttggggaactcccctccaggaaacttctcatcgc 457 | ||| | | || ||||| ||||| || || ||||| |||||||| || |||||||| Sbjct: 2155 aaccttcattaattcgtgggttctgattaggaaactctcctccagggtacatctcatcgt 2096 Query: 458 tcttgtatggtgtcacccaaaggttgtgcttcaagaatccggctcttcgaagaaacttcg 517 | ||||||| ||| |||||||| || ||||| |||||||| ||||||| || || |||| Sbjct: 2095 ttttgtatgatgtaacccaaagattatgctttaagaatccagctcttctcaggaatttcg 2036 Query: 518 cctcgggcagagcaaatggcaaacagtttgaaccaggcacgagtctgaaaccagttggtt 577 |||| ||||| || || || | ||||||||||||||| | ||| || | || ||||||| Sbjct: 2035 cctcaggcagggccaacggaagacagtttgaaccaggtatgagcttgtagcctgttggtt 1976 Query: 578 gtccggtacgatttacagccctcgtgttcctaacaatccaat 619 |||| ||||||||||||| ||| ||||||| |||||||||| Sbjct: 1975 gtccagtacgatttacagtccttgtgttccgtacaatccaat 1934
>gb|AF089851.1|AF089851 Glycine max peroxisomal copper-containing amine oxidase (PAO1) mRNA, complete cds Length = 2665 Score = 107 bits (54), Expect = 4e-20 Identities = 181/222 (81%), Gaps = 1/222 (0%) Strand = Plus / Minus Query: 224 acatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccgatgcgt 283 ||||| |||||||||||||| ||||| || ||||| ||||| |||||||| || |||||| Sbjct: 2363 acatcaacagcaggcgagcaattgaaaaacccatgcggcataagcatgaaaccaatgcgt 2304 Query: 284 tccactggcatgaccggccagtcttccagccttgggatgtgggtgagtccaaatacatac 343 ||||| ||||| || ||||||||||||| || || ||||| || | ||||||||| ||| Sbjct: 2303 tccacgggcataacaggccagtcttccaatctaggaatgtgtgtcactccaaatacgtac 2244 Query: 344 cagaggacgatgtcagtttcctccaagggcctatcctgcttgacccaagtagcc-aaccc 402 || || || || |||| |||||||| | | || ||||| |||||||||||| ||||| Sbjct: 2243 caaagaactatatcagcttcctccagtgatcgattttgcttaacccaagtagccaaaccc 2184 Query: 403 tcgtgaagacgtggattctggttggggaactcccctccagga 444 || || ||||||||| || || |||||||| ||||||||| Sbjct: 2183 tctccaacacgtggattttgattagggaactctcctccagga 2142
>emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016B03, complete sequence Length = 125780 Score = 103 bits (52), Expect = 7e-19 Identities = 160/196 (81%) Strand = Plus / Plus Query: 412 cgtggattctggttggggaactcccctccaggaaacttctcatcgctcttgtatggtgtc 471 ||||| ||||| || || ||||| |||||||| || |||||||| | ||||||| ||| Sbjct: 103394 cgtgggttctgattaggaaactctcctccagggtacatctcatcgtttttgtatgatgta 103453 Query: 472 acccaaaggttgtgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagca 531 |||||||| || ||||| |||||||| ||||||| || || |||||||| ||||| || Sbjct: 103454 acccaaagattatgctttaagaatccagctcttctcaggaatttcgcctcaggcagggcc 103513 Query: 532 aatggcaaacagtttgaaccaggcacgagtctgaaaccagttggttgtccggtacgattt 591 || || | ||||||||||||||| | ||| || | || ||||||||||| ||||||||| Sbjct: 103514 aacggaagacagtttgaaccaggtatgagcttgtagcctgttggttgtccagtacgattt 103573 Query: 592 acagccctcgtgttcc 607 |||| ||| ||||||| Sbjct: 103574 acagtccttgtgttcc 103589 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 266 agcatgaagccgatgcgttccactggcatgaccggccagtcttccagccttggga 320 ||||||||||||||| ||||||||||||| || ||||||||||| |||||||||| Sbjct: 102972 agcatgaagccgatgtgttccactggcattacaggccagtcttcgagccttggga 103026 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 219 gaggcacatcgacagcaggcgagcagttgaagaatccatgtggc 262 ||||||| |||| ||||| ||||||| ||||||||||| |||| Sbjct: 102769 gaggcacgtcgatcgcaggtgagcagtcgaagaatccatctggc 102812
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 95.6 bits (48), Expect = 2e-16 Identities = 144/176 (81%) Strand = Plus / Plus Query: 436 cctccaggaaacttctcatcgctcttgtatggtgtcacccaaaggttgtgcttcaagaat 495 |||||||| ||| |||||||| | ||| | | ||| ||||||||||| ||||| || ||| Sbjct: 22975076 cctccagggaacatctcatcgtttttgaacgatgtaacccaaaggttatgctttaaaaat 22975135 Query: 496 ccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacagtttgaaccaggc 555 || ||||||| || || |||||||| ||||| || | ||| | |||| |||||||||| Sbjct: 22975136 ccagctcttctcaggaatttcgcctcaggcagggccagtggaagacagcttgaaccaggt 22975195 Query: 556 acgagtctgaaaccagttggttgtccggtacgatttacagccctcgtgttcctaac 611 ||||| || | || ||||||||||| ||||||||||||| ||| ||||||||||| Sbjct: 22975196 acgagcttgtaccctgttggttgtccagtacgatttacagtccttgtgttcctaac 22975251 Score = 91.7 bits (46), Expect = 3e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 266 agcatgaagccgatgcgttccactggcatgaccggccagtcttccagccttgggatgtgg 325 |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct: 22974799 agcatgaagctgatgcgttccactggcatgacaggccagtcttccagcctagggatatgg 22974858 Query: 326 gt 327 || Sbjct: 22974859 gt 22974860 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 215 ccaggaggcacatcgacagcaggcgagcagttgaagaatccat 257 |||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 22974586 ccaggaggcacatcgatggcaggcgagcagttgaagagtccat 22974628
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 95.6 bits (48), Expect = 2e-16 Identities = 144/176 (81%) Strand = Plus / Plus Query: 436 cctccaggaaacttctcatcgctcttgtatggtgtcacccaaaggttgtgcttcaagaat 495 |||||||| ||| |||||||| | ||| | | ||| ||||||||||| ||||| || ||| Sbjct: 94878 cctccagggaacatctcatcgtttttgaacgatgtaacccaaaggttatgctttaaaaat 94937 Query: 496 ccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacagtttgaaccaggc 555 || ||||||| || || |||||||| ||||| || | ||| | |||| |||||||||| Sbjct: 94938 ccagctcttctcaggaatttcgcctcaggcagggccagtggaagacagcttgaaccaggt 94997 Query: 556 acgagtctgaaaccagttggttgtccggtacgatttacagccctcgtgttcctaac 611 ||||| || | || ||||||||||| ||||||||||||| ||| ||||||||||| Sbjct: 94998 acgagcttgtaccctgttggttgtccagtacgatttacagtccttgtgttcctaac 95053 Score = 91.7 bits (46), Expect = 3e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 266 agcatgaagccgatgcgttccactggcatgaccggccagtcttccagccttgggatgtgg 325 |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct: 94601 agcatgaagctgatgcgttccactggcatgacaggccagtcttccagcctagggatatgg 94660 Query: 326 gt 327 || Sbjct: 94661 gt 94662 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 215 ccaggaggcacatcgacagcaggcgagcagttgaagaatccat 257 |||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 94388 ccaggaggcacatcgatggcaggcgagcagttgaagagtccat 94430
>ref|NM_129810.2| Arabidopsis thaliana copper ion binding AT2G42490 mRNA, complete cds Length = 2834 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 484 tgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacag 543 ||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 2295 tgcttcaggaaagcggctcttcttagaaacttcgcctcgggtcgagctaatggcaaacaa 2236 Query: 544 tttgaaccaggcacgagtctgaaaccagttggttgtccggtacgatttacagccctcgtg 603 |||||||| || || ||| || | || ||| ||| || || | ||||||| ||| ||| Sbjct: 2235 tttgaacccggaacaagtttgtatcccgttaattggcccgtcctgtttacagtccttgtg 2176 Query: 604 ttcctaacaatccaatgtcgcgcaga 629 ||||| ||||||||||| || ||||| Sbjct: 2175 ttccttacaatccaatggcgagcaga 2150 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccgatg 280 |||||||| || || || ||||||||||| |||||||||||||| || |||| || || Sbjct: 2559 ggcacatctactgccggtgagcagttgaaaaatccatgtggcattagtgtgaaaccaata 2500 Query: 281 cgttccactggcatgaccggccagtcttc 309 |||| || ||||| |||||||| ||||| Sbjct: 2499 tgttcgacgggcataaccggccaatcttc 2471
>gb|BT000029.1| Arabidopsis thaliana putative copper amine oxidase (At2g42490) mRNA, complete cds Length = 2443 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 484 tgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacag 543 ||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 1973 tgcttcaggaaagcggctcttcttagaaacttcgcctcgggtcgagctaatggcaaacaa 1914 Query: 544 tttgaaccaggcacgagtctgaaaccagttggttgtccggtacgatttacagccctcgtg 603 |||||||| || || ||| || | || ||| ||| || || | ||||||| ||| ||| Sbjct: 1913 tttgaacccggaacaagtttgtatcccgttaattggcccgtcctgtttacagtccttgtg 1854 Query: 604 ttcctaacaatccaatgtcgcgcaga 629 ||||| ||||||||||| || ||||| Sbjct: 1853 ttccttacaatccaatggcgagcaga 1828 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccgatg 280 |||||||| || || || ||||||||||| |||||||||||||| || |||| || || Sbjct: 2237 ggcacatctactgccggtgagcagttgaaaaatccatgtggcattagtgtgaaaccaata 2178 Query: 281 cgttccactggcatgaccggccagtcttc 309 |||| || ||||| |||||||| ||||| Sbjct: 2177 tgttcgacgggcataaccggccaatcttc 2149
>gb|AY120717.1| Arabidopsis thaliana putative copper amine oxidase (At2g42490) mRNA, complete cds Length = 2829 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 484 tgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacag 543 ||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 2295 tgcttcaggaaagcggctcttcttagaaacttcgcctcgggtcgagctaatggcaaacaa 2236 Query: 544 tttgaaccaggcacgagtctgaaaccagttggttgtccggtacgatttacagccctcgtg 603 |||||||| || || ||| || | || ||| ||| || || | ||||||| ||| ||| Sbjct: 2235 tttgaacccggaacaagtttgtatcccgttaattggcccgtcctgtttacagtccttgtg 2176 Query: 604 ttcctaacaatccaatgtcgcgcaga 629 ||||| ||||||||||| || ||||| Sbjct: 2175 ttccttacaatccaatggcgagcaga 2150 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccgatg 280 |||||||| || || || ||||||||||| |||||||||||||| || |||| || || Sbjct: 2559 ggcacatctactgccggtgagcagttgaaaaatccatgtggcattagtgtgaaaccaata 2500 Query: 281 cgttccactggcatgaccggccagtcttc 309 |||| || ||||| |||||||| ||||| Sbjct: 2499 tgttcgacgggcataaccggccaatcttc 2471
>dbj|AK222186.1| Arabidopsis thaliana mRNA for putative copper amine oxidase, complete cds, clone: RAFL24-12-M03 Length = 1707 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 484 tgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacag 543 ||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 1159 tgcttcaggaaagcggctcttcttagaaacttcgcctcgggtcgagctaatggcaaacaa 1100 Query: 544 tttgaaccaggcacgagtctgaaaccagttggttgtccggtacgatttacagccctcgtg 603 |||||||| || || ||| || | || ||| ||| || || | ||||||| ||| ||| Sbjct: 1099 tttgaacccggaacaagtttgtatcccgttaattggcccgtcctgtttacagtccttgtg 1040 Query: 604 ttcctaacaatccaatgtcgcgcaga 629 ||||| ||||||||||| || ||||| Sbjct: 1039 ttccttacaatccaatggcgagcaga 1014 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggcatgagcatgaagccgatg 280 |||||||| || || || ||||||||||| |||||||||||||| || |||| || || Sbjct: 1423 ggcacatctactgccggtgagcagttgaaaaatccatgtggcattagtgtgaaaccaata 1364 Query: 281 cgttccactggcatgaccggccagtcttc 309 |||| || ||||| |||||||| ||||| Sbjct: 1363 tgttcgacgggcataaccggccaatcttc 1335
>gb|AC007087.7| Arabidopsis thaliana chromosome 2 clone F14N22 map mi551, complete sequence Length = 96685 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 484 tgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacag 543 ||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 93684 tgcttcaggaaagcggctcttcttagaaacttcgcctcgggtcgagctaatggcaaacaa 93625 Query: 544 tttgaacc 551 |||||||| Sbjct: 93624 tttgaacc 93617 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Minus Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggc 262 |||||||| || || || ||||||||||| |||||||||||| Sbjct: 94132 ggcacatctactgccggtgagcagttgaaaaatccatgtggc 94091
>gb|AC005956.4| Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence Length = 85835 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 484 tgcttcaagaatccggctcttcgaagaaacttcgcctcgggcagagcaaatggcaaacag 543 ||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct: 75398 tgcttcaggaaagcggctcttcttagaaacttcgcctcgggtcgagctaatggcaaacaa 75457 Query: 544 tttgaacc 551 |||||||| Sbjct: 75458 tttgaacc 75465 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Plus Query: 221 ggcacatcgacagcaggcgagcagttgaagaatccatgtggc 262 |||||||| || || || ||||||||||| |||||||||||| Sbjct: 74950 ggcacatctactgccggtgagcagttgaaaaatccatgtggc 74991
>gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete sequence Length = 117437 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 266 agcatgaagccgatgcgttccactggcatgaccggccagtcttccagccttgggatgtgg 325 |||||||| || ||||||||||| ||||| || ||||||||||||| | ||| ||||| Sbjct: 44365 agcatgaaacctatgcgttccaccggcataacaggccagtcttccaatcgtggaatgtgt 44306 Query: 326 gtgagtccaaatacatacc 344 || | |||||||||||||| Sbjct: 44305 gtcactccaaatacatacc 44287 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Minus Query: 472 acccaaaggttgtgcttcaagaatccggctcttcgaagaaactt 515 |||||||| |||||||||||||| | |||||||| |||||||| Sbjct: 44017 acccaaagattgtgcttcaagaaagctgctcttcgcagaaactt 43974
>gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete sequence Length = 158491 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 agagcaaatggcaaacagtttg 547 |||||||||||||||||||||| Sbjct: 155492 agagcaaatggcaaacagtttg 155471
>gb|AC009909.6| Drosophila melanogaster clone BACR30P05, complete sequence Length = 171772 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 catcagcggcatcagaggtgcc 216 |||||||||||||||||||||| Sbjct: 48658 catcagcggcatcagaggtgcc 48637
>gb|AC099014.1| Drosophila melanogaster, chromosome 2R, region 56D-56D, BAC clone BACR26L01, complete sequence Length = 160106 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 agagcaaatggcaaacagtttg 547 |||||||||||||||||||||| Sbjct: 88433 agagcaaatggcaaacagtttg 88412
>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete sequence Length = 248096 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 526 agagcaaatggcaaacagtttg 547 |||||||||||||||||||||| Sbjct: 108736 agagcaaatggcaaacagtttg 108757
>gb|AE003582.4| Drosophila melanogaster chromosome 2L, section 9 of 83 of the complete sequence Length = 295132 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 catcagcggcatcagaggtgcc 216 |||||||||||||||||||||| Sbjct: 71516 catcagcggcatcagaggtgcc 71495
>gb|AC005148.1|AC005148 Drosophila melanogaster DNA sequence (P1s DS05759 (D204) and DS09033 (D211)), complete sequence Length = 95262 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 526 agagcaaatggcaaacagtttg 547 |||||||||||||||||||||| Sbjct: 51503 agagcaaatggcaaacagtttg 51524
>gb|AC002444.1|AC002444 Drosophila melanogaster (P1 DS02782 (D71)) DNA sequence, complete sequence Length = 80124 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 catcagcggcatcagaggtgcc 216 |||||||||||||||||||||| Sbjct: 44226 catcagcggcatcagaggtgcc 44247
>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence Length = 203276 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cacatattacagaaaataaaa 75 ||||||||||||||||||||| Sbjct: 17582 cacatattacagaaaataaaa 17602
>gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete sequence Length = 222162 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cacatattacagaaaataaaa 75 ||||||||||||||||||||| Sbjct: 142726 cacatattacagaaaataaaa 142706
>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence Length = 208781 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cacatattacagaaaataaaa 75 ||||||||||||||||||||| Sbjct: 180410 cacatattacagaaaataaaa 180430
>emb|AL109809.18|HSJ673D20 Human DNA sequence from clone RP4-673D20 on chromosome 20 Contains a PTPNS (protein tyrosine phosphatase, non-receptor type substrate) family pseudogene, the 5' end of the SIRPB2 gene for signal-regulatory protein beta 2 and a CpG island, complete sequence Length = 132396 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ttcagagcttggagacaaggc 155 ||||||||||||||||||||| Sbjct: 69895 ttcagagcttggagacaaggc 69875
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence Length = 206482 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 cttccagccttgggatgtggg 326 ||||||||||||||||||||| Sbjct: 98826 cttccagccttgggatgtggg 98806
>gb|AY150155.1| Newcastle disease virus strain HU-1G/00 fusion protein (F) gene, partial cds Length = 374 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cggcatcagaggtgccagga 220 |||||||||||||||||||| Sbjct: 45 cggcatcagaggtgccagga 26
>gb|AC092448.6| Homo sapiens BAC clone RP11-776E7 from 7, complete sequence Length = 169788 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cttcagagcttggagacaag 153 |||||||||||||||||||| Sbjct: 101726 cttcagagcttggagacaag 101745
>gb|AC007128.2| Homo sapiens PAC clone RP4-594A5 from 7, complete sequence Length = 108189 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aacttttattgccagtttgt 111 |||||||||||||||||||| Sbjct: 14809 aacttttattgccagtttgt 14828
>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence Length = 171537 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 catattacagaaaataaaacagac 80 ||||||||||| |||||||||||| Sbjct: 125693 catattacagacaataaaacagac 125670
>ref|XM_533557.2| PREDICTED: Canis familiaris similar to testicular serine protease 2 (predicted) (LOC476356), mRNA Length = 1313 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 aagtagccaaccctcgtgaagacg 413 |||||||||||||| ||||||||| Sbjct: 926 aagtagccaaccctggtgaagacg 903
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 4662078 cagtttgaaccaggcacgag 4662059
>gb|AC146202.3| Pan troglodytes BAC clone RP43-35A11 from 7, complete sequence Length = 161532 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 catattacagaaaataaaacagac 80 ||||||||||| |||||||||||| Sbjct: 108631 catattacagacaataaaacagac 108608
>gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete sequence Length = 122251 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 262 catgagcatgaagccgatgcgttccactggcatgaccggccagtcttc 309 ||||||||| || || ||| |||| |||||||| || ||||||||||| Sbjct: 91539 catgagcataaaaccaatgtgttctactggcataacaggccagtcttc 91586
>gb|AY971375.1| Neurospora crassa nonfunctional SET-2 (set-2) gene, set-2-RIP1 allele, partial sequence Length = 3043 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 aggcacatcgacagcaggcg 239 |||||||||||||||||||| Sbjct: 1934 aggcacatcgacagcaggcg 1915
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 4419382 cagtttgaaccaggcacgag 4419363
>emb|AL355301.9| Human DNA sequence from clone RP11-594J24 on chromosome 10 Contains the 5' end of gene FLJ37160 and twp CpG islands, complete sequence Length = 135538 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 acttttattgccagtttgttcttt 116 ||||||||||||||| |||||||| Sbjct: 34382 acttttattgccagtatgttcttt 34405
>gb|AC025029.16| Homo sapiens 3 BAC RP11-442C9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 92601 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 aaatggcaaacagtttgaac 550 |||||||||||||||||||| Sbjct: 40782 aaatggcaaacagtttgaac 40801
>gb|AF515706.1| Schistosoma mansoni Fes-like tyrosine kinase protein mRNA, complete cds Length = 4911 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 acacatattacagaaaataa 73 |||||||||||||||||||| Sbjct: 214 acacatattacagaaaataa 233
>gb|AE008891.1| Salmonella typhimurium LT2, section 195 of 220 of the complete genome Length = 25646 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 23855 cagtttgaaccaggcacgag 23836
>emb|X53001.1|STKATG Salmonella typhimurium Kat G gene for hydroperoxidase I Length = 2387 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 1386 cagtttgaaccaggcacgag 1367
>emb|AL663034.12| Mouse DNA sequence from clone RP23-266P16 on chromosome 11 Contains part of a novel gene, complete sequence Length = 70518 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 attacagaaaataaaacaga 79 |||||||||||||||||||| Sbjct: 51216 attacagaaaataaaacaga 51235
>emb|AL627279.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 15/20 Length = 264050 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 157966 cagtttgaaccaggcacgag 157985
>gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, complete sequence Length = 184007 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 catattacagaaaataaaacagac 80 ||||||||||| |||||||||||| Sbjct: 135758 catattacagacaataaaacagac 135735
>gb|AC148314.3| Pan troglodytes BAC clone CH251-527C13 from chromosome 7, complete sequence Length = 172090 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 catattacagaaaataaaacagac 80 ||||||||||| |||||||||||| Sbjct: 24779 catattacagacaataaaacagac 24756
>emb|BX649560.7| Mouse DNA sequence from clone RP23-397H18 on chromosome 2, complete sequence Length = 58572 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aaacagtttgaaccaggcac 557 |||||||||||||||||||| Sbjct: 31071 aaacagtttgaaccaggcac 31052
>gb|AC104609.10| Drosophila melanogaster X BAC RP98-39F18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165014 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 agcaaatggcaaacagtttg 547 |||||||||||||||||||| Sbjct: 90367 agcaaatggcaaacagtttg 90386
>gb|AC011358.7| Homo sapiens chromosome 5 clone CTC-367D15, complete sequence Length = 201251 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 437 ctccaggaaacttctcatcgctcttgta 464 |||||||||||| |||||||||| |||| Sbjct: 655 ctccaggaaactcctcatcgctcctgta 628
>gb|AC022426.5| Homo sapiens chromosome 5 clone CTD-2315O11, complete sequence Length = 110833 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 437 ctccaggaaacttctcatcgctcttgta 464 |||||||||||| |||||||||| |||| Sbjct: 97640 ctccaggaaactcctcatcgctcctgta 97667
>gb|AC011400.5| Homo sapiens chromosome 5 clone CTB-31E20, complete sequence Length = 160378 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 437 ctccaggaaacttctcatcgctcttgta 464 |||||||||||| |||||||||| |||| Sbjct: 25291 ctccaggaaactcctcatcgctcctgta 25318
>dbj|AK169496.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630046L11 product:hypothetical protein, full insert sequence Length = 3251 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aaacagtttgaaccaggcac 557 |||||||||||||||||||| Sbjct: 1062 aaacagtttgaaccaggcac 1043
>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold Length = 1678549 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 acacacatattacagaaaataaaacaga 79 |||| ||| ||||||||||||||||||| Sbjct: 1421140 acactcattttacagaaaataaaacaga 1421113
>gb|AC025972.6|AC025972 Homo sapiens chromosome 11, clone RP11-6K5, complete sequence Length = 165962 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 agcttcagagcttggagacaaggc 155 |||||||||||||| ||||||||| Sbjct: 7726 agcttcagagcttgaagacaaggc 7749
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gaagcttcagagcttggagacaag 153 |||||||||||||||||| ||||| Sbjct: 3300969 gaagcttcagagcttggacacaag 3300992
>emb|AL112879.1|CNS01AFR Botrytis cinerea strain T4 cDNA library Length = 530 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 284 tccactggcatgaccggccagtcttcca 311 ||||| |||||||||||||| ||||||| Sbjct: 321 tccaccggcatgaccggccaatcttcca 294
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 acacacatattacagaaaataaaacaga 79 |||| ||| ||||||||||||||||||| Sbjct: 1443874 acactcattttacagaaaataaaacaga 1443847
>gb|AC123966.4| Macaca mulatta clone CH250-72H9, complete sequence Length = 114602 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 acacacatattacagaaaataaaacaga 79 |||| ||| ||||||||||||||||||| Sbjct: 95856 acactcattttacagaaaataaaacaga 95829
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 4102975 cagtttgaaccaggcacgag 4102956
>dbj|AB099890.1| Oryzias latipes ctsL mRNA for cathepsin L, complete cds Length = 1369 Score = 40.1 bits (20), Expect = 8.6 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 42 cgagcagcaaacacacata-ttacagaaaataaaac 76 ||||||||| ||||||||| ||||||| |||||||| Sbjct: 1185 cgagcagcacacacacatatttacagagaataaaac 1150
>dbj|AB159445.1| Bombyx mori DNA, chromosome 2, clone:544H24, complete sequence Length = 205107 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 agataacttttattgccagt 107 |||||||||||||||||||| Sbjct: 165681 agataacttttattgccagt 165700
>emb|X68337.1|PCBPF1 P.crispum BPF-1 gene for DNA-binding protein Length = 5777 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 atattacagaaaataaaaca 77 |||||||||||||||||||| Sbjct: 5614 atattacagaaaataaaaca 5595
>emb|X62653.1|HSBPF1 P.crispum BPF-1 mRNA Length = 2601 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 atattacagaaaataaaaca 77 |||||||||||||||||||| Sbjct: 2417 atattacagaaaataaaaca 2398
>gb|AC006384.2|AC006384 Homo sapiens BAC clone RP11-557I6 from 7q11.23-q21.1, complete sequence Length = 128959 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 catattacagaaaataaaacagac 80 ||||||||||| |||||||||||| Sbjct: 8181 catattacagacaataaaacagac 8204
>emb|BX649349.12| Zebrafish DNA sequence from clone CH211-284F7 in linkage group 4, complete sequence Length = 65051 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 acatattacagaaaataaaa 75 |||||||||||||||||||| Sbjct: 40674 acatattacagaaaataaaa 40655
>emb|CT573365.4| M.truncatula DNA sequence from clone MTH2-89E15 on chromosome 3, complete sequence Length = 123679 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 262 catgagcatgaagccgatgcgttccactggcatgaccggccagtcttc 309 ||||||||| || || ||| |||| |||||||| || ||||||||||| Sbjct: 4621 catgagcataaaaccaatgtgttctactggcataacaggccagtcttc 4668
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 3607626 cagtttgaaccaggcacgag 3607645
>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete sequence Length = 299153 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 agcaaatggcaaacagtttg 547 |||||||||||||||||||| Sbjct: 84472 agcaaatggcaaacagtttg 84491
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cagtttgaaccaggcacgag 560 |||||||||||||||||||| Sbjct: 4255189 cagtttgaaccaggcacgag 4255170
>gb|AC138437.3| Cercopithecus aethiops clone CH252-390I5, complete sequence Length = 182169 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 acacacatattacagaaaataaaacaga 79 |||| ||| ||||||||||||||||||| Sbjct: 139975 acactcattttacagaaaataaaacaga 139948 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,297,807 Number of Sequences: 3902068 Number of extensions: 5297807 Number of successful extensions: 97218 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 96805 Number of HSP's gapped (non-prelim): 397 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
