ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.20
2dbj|AK122097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.20
3dbj|AK069926.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.20
4emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 44 0.20
5emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in... 40 3.1

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 205      accggatcaaaaccttgtttcccattggnggga 237
                |||||| ||||||||||||| ||||||| ||||
Sbjct: 22393549 accggaccaaaaccttgttttccattggaggga 22393517



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>dbj|AK122097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125F07, full
           insert sequence
          Length = 239

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 205 accggatcaaaaccttgtttcccattggnggga 237
           |||||| ||||||||||||| ||||||| ||||
Sbjct: 47  accggaccaaaaccttgttttccattggaggga 15



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>dbj|AK069926.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036B01, full
            insert sequence
          Length = 1632

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 205  accggatcaaaaccttgtttcccattggnggga 237
            |||||| ||||||||||||| ||||||| ||||
Sbjct: 1423 accggaccaaaaccttgttttccattggaggga 1391



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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 205    accggatcaaaaccttgtttcccattggnggga 237
              |||||| ||||||||||||| ||||||| ||||
Sbjct: 144455 accggaccaaaaccttgttttccattggaggga 144423



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>emb|BX897729.6| Zebrafish DNA sequence from clone DKEY-240A12 in linkage group 4,
              complete sequence
          Length = 201932

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     acagacaccactgtttcttt 102
              ||||||||||||||||||||
Sbjct: 174947 acagacaccactgtttcttt 174928


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,040,972
Number of Sequences: 3902068
Number of extensions: 1040972
Number of successful extensions: 17824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17813
Number of HSP's gapped (non-prelim): 11
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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