ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480212.1| Oryza sativa (japonica cultivar-group), mRNA 123 7e-25
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
3dbj|AK111915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
4dbj|AK111830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
5dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
6gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8dbj|AK099775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
9dbj|AK100136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
10gb|AY104174.1| Zea mays PCO089382 mRNA sequence 62 2e-06
11gb|AC011467.7| Homo sapiens chromosome 19 clone CTC-457E21, comp... 48 0.035
12gb|AC118260.7| Mus musculus chromosome 5, clone RP24-374B14, com... 42 2.1
13gb|AF070013.1| Microtus ochrogaster truncated arginine vasopress... 42 2.1
14gb|AC129183.3| Mus musculus BAC clone RP23-350M13 from chromosom... 42 2.1
15gb|AC122027.1| Mus musculus BAC clone RP24-390L20 from 1, comple... 42 2.1
16dbj|AK030169.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 2.1
17gb|AC017006.4| Homo sapiens BAC clone RP11-110G2 from 2, complet... 42 2.1
18gb|AC114905.10| Mus musculus chromosome 1, clone RP24-127K21, co... 42 2.1
19emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 42 2.1
20gb|AC120136.9| Mus musculus chromosome 1, clone RP23-277E3, comp... 42 2.1
21gb|AC139186.4| Mus musculus BAC clone RP24-92D20 from 8, complet... 42 2.1
22gb|AC133456.11| Mus musculus chromosome 5, clone RP24-465G18, co... 40 8.5
23gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosom... 40 8.5
24gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosom... 40 8.5
25gb|AC113328.5| Mus musculus chromosome 3, clone RP23-456E2, comp... 40 8.5
26gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome ... 40 8.5
27gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosom... 40 8.5
28gb|AC146451.3| Pan troglodytes BAC clone RP43-1L21 from 7, compl... 40 8.5
29gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome... 40 8.5
30gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome 40 8.5
31gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 40 8.5
32gb|AC111141.7| Mus musculus chromosome 3, clone RP23-369G12, com... 40 8.5
33gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome... 40 8.5
34gb|AC161223.4| Mus musculus chromosome 3, clone RP24-173A7, comp... 40 8.5
35emb|AL390035.10| Human DNA sequence from clone RP13-9D14 on chro... 40 8.5
36gb|AC015920.14| Homo sapiens chromosome 17, clone CTD-3022L24, c... 40 8.5
37emb|AL118508.27|HSJ737E23 Human DNA sequence from clone RP4-737E... 40 8.5
38gb|AC164153.2| Mus musculus chromosome 3, clone RP23-370M4, comp... 40 8.5
39gb|AC140930.3| Mus musculus BAC clone RP23-116P20 from chromosom... 40 8.5
40gb|AC115085.4| Homo sapiens chromosome 17, clone RP11-280F10, co... 40 8.5
41gb|AC008835.6| Homo sapiens chromosome 5 clone CTD-2148E3, compl... 40 8.5
42gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosom... 40 8.5
43gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, complet... 40 8.5
44gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell... 40 8.5
45gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 40 8.5
46gb|AC156630.6| Mus musculus BAC clone RP24-556B7 from chromosome... 40 8.5
47gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 ... 40 8.5
48gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosom... 40 8.5
49gb|AC132625.3| Mus musculus BAC clone RP23-101M7 from 1, complet... 40 8.5
50gb|AC131673.4| Mus musculus BAC clone RP23-321P21 from 1, comple... 40 8.5
51emb|AL954296.9| Mouse DNA sequence from clone RP23-272P2 on chro... 40 8.5
52emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chro... 40 8.5
53emb|AL732526.8| Mouse DNA sequence from clone RP23-338O4 on chro... 40 8.5 
>ref|XM_480212.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3453

 Score =  123 bits (62), Expect = 7e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 462  ttgttagatgctgctggagctgatgacatgggcgggtgggctccgttatcctggggaggc 521
            ||||||| |||||| ||||| | ||| || |  ||||||| ||| || || || ||||||
Sbjct: 3440 ttgttagctgctgccggagccgctgatattgtggggtgggttccattgtcttgaggaggc 3381

                                                                        
Query: 522  gcaactccccactttgggtccgcgtccagtggctcaaccacatgaactgccccgtcgctc 581
            || ||||||||||||||||| | |||||  ||||| ||||||||||| || || ||||||
Sbjct: 3380 gccactccccactttgggtctgagtccaacggctccaccacatgaacagcaccatcgctc 3321

                                                  
Query: 582  atgccaactgcaatctggttaggctccaagggatgcgc 619
            ||||| || |||||||||||||||||||||||||||||
Sbjct: 3320 atgccgaccgcaatctggttaggctccaagggatgcgc 3283
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 7e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                           
Query: 462     ttgttagatgctgctggagctgatgacatgggcgggtgggctccgttatcctggggaggc 521
               ||||||| |||||| ||||| | ||| || |  ||||||| ||| || || || ||||||
Sbjct: 3668908 ttgttagctgctgccggagccgctgatattgtggggtgggttccattgtcttgaggaggc 3668849

                                                                           
Query: 522     gcaactccccactttgggtccgcgtccagtggctcaaccacatgaactgccccgtcgctc 581
               || ||||||||||||||||| | |||||  ||||| ||||||||||| || || ||||||
Sbjct: 3668848 gccactccccactttgggtctgagtccaacggctccaccacatgaacagcaccatcgctc 3668789

                                                     
Query: 582     atgccaactgcaatctggttaggctccaagggatgcgc 619
               ||||| || |||||||||||||||||||||||||||||
Sbjct: 3668788 atgccgaccgcaatctggttaggctccaagggatgcgc 3668751



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 273     aagaaccaaaaactaatctagacatgccatcatca 307
               ||||||||||||||||| |||||||| ||||||||
Sbjct: 3669132 aagaaccaaaaactaatttagacatgtcatcatca 3669098



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 323     aaggagatggtgtggacttgatacatatcacctc 356
               ||||||||| |||||||||||||||| |||||||
Sbjct: 3669062 aaggagatgctgtggacttgatacatttcacctc 3669029



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                       
Query: 185     aaccaccactagctgggagcaggaaaagctttacaaagga 224
               ||||||||||||||  ||||  ||||||||||||||||||
Sbjct: 3669249 aaccaccactagctcagagctagaaaagctttacaaagga 3669210



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 96      catccaacatgacaagcatattttacacta 125
               ||||||||||| ||| ||||||||||||||
Sbjct: 3669338 catccaacatgccaaccatattttacacta 3669309
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>dbj|AK111915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131E20, full
            insert sequence
          Length = 1709

 Score =  123 bits (62), Expect = 7e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 462  ttgttagatgctgctggagctgatgacatgggcgggtgggctccgttatcctggggaggc 521
            ||||||| |||||| ||||| | ||| || |  ||||||| ||| || || || ||||||
Sbjct: 1243 ttgttagctgctgccggagccgctgatattgtggggtgggttccattgtcttgaggaggc 1184

                                                                        
Query: 522  gcaactccccactttgggtccgcgtccagtggctcaaccacatgaactgccccgtcgctc 581
            || ||||||||||||||||| | |||||  ||||| ||||||||||| || || ||||||
Sbjct: 1183 gccactccccactttgggtctgagtccaacggctccaccacatgaacagcaccatcgctc 1124

                                                  
Query: 582  atgccaactgcaatctggttaggctccaagggatgcgc 619
            ||||| || |||||||||||||||||||||||||||||
Sbjct: 1123 atgccgaccgcaatctggttaggctccaagggatgcgc 1086



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 273  aagaaccaaaaactaatctagacatgccatcatca 307
            ||||||||||||||||| |||||||| ||||||||
Sbjct: 1467 aagaaccaaaaactaatttagacatgtcatcatca 1433



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 323  aaggagatggtgtggacttgatacatatcacctc 356
            ||||||||| |||||||||||||||| |||||||
Sbjct: 1397 aaggagatgctgtggacttgatacatttcacctc 1364



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 185  aaccaccactagctgggagcaggaaaagctttacaaagga 224
            ||||||||||||||  ||||  ||||||||||||||||||
Sbjct: 1584 aaccaccactagctcagagctagaaaagctttacaaagga 1545



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 96   catccaacatgacaagcatattttacacta 125
            ||||||||||| ||| ||||||||||||||
Sbjct: 1673 catccaacatgccaaccatattttacacta 1644
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>dbj|AK111830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123A16, full
            insert sequence
          Length = 4466

 Score =  123 bits (62), Expect = 7e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 462  ttgttagatgctgctggagctgatgacatgggcgggtgggctccgttatcctggggaggc 521
            ||||||| |||||| ||||| | ||| || |  ||||||| ||| || || || ||||||
Sbjct: 3946 ttgttagctgctgccggagccgctgatattgtggggtgggttccattgtcttgaggaggc 3887

                                                                        
Query: 522  gcaactccccactttgggtccgcgtccagtggctcaaccacatgaactgccccgtcgctc 581
            || ||||||||||||||||| | |||||  ||||| ||||||||||| || || ||||||
Sbjct: 3886 gccactccccactttgggtctgagtccaacggctccaccacatgaacagcaccatcgctc 3827

                                                  
Query: 582  atgccaactgcaatctggttaggctccaagggatgcgc 619
            ||||| || |||||||||||||||||||||||||||||
Sbjct: 3826 atgccgaccgcaatctggttaggctccaagggatgcgc 3789



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 273  aagaaccaaaaactaatctagacatgccatcatca 307
            ||||||||||||||||| |||||||| ||||||||
Sbjct: 4170 aagaaccaaaaactaatttagacatgtcatcatca 4136



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 323  aaggagatggtgtggacttgatacatatcacctc 356
            ||||||||| |||||||||||||||| |||||||
Sbjct: 4100 aaggagatgctgtggacttgatacatttcacctc 4067



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 185  aaccaccactagctgggagcaggaaaagctttacaaagga 224
            ||||||||||||||  ||||  ||||||||||||||||||
Sbjct: 4287 aaccaccactagctcagagctagaaaagctttacaaagga 4248



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 96   catccaacatgacaagcatattttacacta 125
            ||||||||||| ||| ||||||||||||||
Sbjct: 4376 catccaacatgccaaccatattttacacta 4347
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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0577B11
          Length = 180355

 Score =  123 bits (62), Expect = 7e-25
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                          
Query: 462    ttgttagatgctgctggagctgatgacatgggcgggtgggctccgttatcctggggaggc 521
              ||||||| |||||| ||||| | ||| || |  ||||||| ||| || || || ||||||
Sbjct: 147414 ttgttagctgctgccggagccgctgatattgtggggtgggttccattgtcttgaggaggc 147355

                                                                          
Query: 522    gcaactccccactttgggtccgcgtccagtggctcaaccacatgaactgccccgtcgctc 581
              || ||||||||||||||||| | |||||  ||||| ||||||||||| || || ||||||
Sbjct: 147354 gccactccccactttgggtctgagtccaacggctccaccacatgaacagcaccatcgctc 147295

                                                    
Query: 582    atgccaactgcaatctggttaggctccaagggatgcgc 619
              ||||| || |||||||||||||||||||||||||||||
Sbjct: 147294 atgccgaccgcaatctggttaggctccaagggatgcgc 147257



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 273    aagaaccaaaaactaatctagacatgccatcatca 307
              ||||||||||||||||| |||||||| ||||||||
Sbjct: 147638 aagaaccaaaaactaatttagacatgtcatcatca 147604



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 323    aaggagatggtgtggacttgatacatatcacctc 356
              ||||||||| |||||||||||||||| |||||||
Sbjct: 147568 aaggagatgctgtggacttgatacatttcacctc 147535



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 185    aaccaccactagctgggagcaggaaaagctttacaaagga 224
              ||||||||||||||  ||||  ||||||||||||||||||
Sbjct: 147755 aaccaccactagctcagagctagaaaagctttacaaagga 147716



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 96     catccaacatgacaagcatattttacacta 125
              ||||||||||| ||| ||||||||||||||
Sbjct: 147844 catccaacatgccaaccatattttacacta 147815
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>gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B04,
            complete sequence
          Length = 95383

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                        
Query: 560  cacatgaactgccccgtcgctcatgccaactgcaatctggttaggctccaagggatgcgc 619
            |||||||||||| || ||||||||||| ||||||| ||||||||||| | ||||||||||
Sbjct: 4719 cacatgaactgcaccatcgctcatgccgactgcaaactggttaggcttccagggatgcgc 4778
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                           
Query: 560     cacatgaactgccccgtcgctcatgccaactgcaatctggttaggctccaagggatgcgc 619
               |||||||||||| || ||||||||||| ||||||| ||||||||||| | ||||||||||
Sbjct: 8426449 cacatgaactgcaccatcgctcatgccgactgcaaactggttaggcttccagggatgcgc 8426508
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>dbj|AK099775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095E22, full
            insert sequence
          Length = 4561

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                        
Query: 560  cacatgaactgccccgtcgctcatgccaactgcaatctggttaggctccaagggatgcgc 619
            |||||||||||| || ||||||||||| ||||||| ||||||||||| | ||||||||||
Sbjct: 4234 cacatgaactgcaccatcgctcatgccgactgcaaactggttaggcttccagggatgcgc 4175
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>dbj|AK100136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010H12, full
            insert sequence
          Length = 4892

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                        
Query: 560  cacatgaactgccccgtcgctcatgccaactgcaatctggttaggctccaagggatgcgc 619
            |||||||||||| || ||||||||||| ||||||| ||||||||||| | ||||||||||
Sbjct: 4490 cacatgaactgcaccatcgctcatgccgactgcaaactggttaggcttccagggatgcgc 4431
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>gb|AY104174.1| Zea mays PCO089382 mRNA sequence
          Length = 1148

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 103/127 (81%)
 Strand = Plus / Minus

                                                                       
Query: 493 gcgggtgggctccgttatcctggggaggcgcaactccccactttgggtccgcgtccagtg 552
           ||||||| ||||| || ||||| ||||| ||   ||||||||| |||||| |||| | ||
Sbjct: 996 gcgggtgcgctccattgtcctgtggaggtgccgatccccacttcgggtccccgtctaatg 937

                                                                       
Query: 553 gctcaaccacatgaactgccccgtcgctcatgccaactgcaatctggttaggctccaagg 612
           |||| |||||||| ||    |||||||||||||| |  || |||||||||||||||| ||
Sbjct: 936 gctccaccacatggaccttgccgtcgctcatgccgatcgcgatctggttaggctccatgg 877

                  
Query: 613 gatgcgc 619
           | |||||
Sbjct: 876 ggtgcgc 870
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>gb|AC011467.7| Homo sapiens chromosome 19 clone CTC-457E21, complete sequence
          Length = 187888

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 463    tgttagatgctgctggagctgatg 486
              ||||||||||||||||||||||||
Sbjct: 175595 tgttagatgctgctggagctgatg 175618
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>gb|AC118260.7| Mus musculus chromosome 5, clone RP24-374B14, complete sequence
          Length = 158892

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 287   aatctagacatgccatcatca 307
             |||||||||||||||||||||
Sbjct: 75666 aatctagacatgccatcatca 75686
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>gb|AF070013.1| Microtus ochrogaster truncated arginine vasopressin receptor 1a gene,
            complete cds
          Length = 4153

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 378  ctgtttctttctccctatctcctag 402
            |||||||| ||||||||||||||||
Sbjct: 1178 ctgtttctctctccctatctcctag 1202
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>gb|AC129183.3| Mus musculus BAC clone RP23-350M13 from chromosome 3, complete sequence
          Length = 201277

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 261    caaaaaacaaccaagaaccaaaaac 285
              |||||||||| ||||||||||||||
Sbjct: 125135 caaaaaacaaacaagaaccaaaaac 125111
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>gb|AC122027.1| Mus musculus BAC clone RP24-390L20 from 1, complete sequence
          Length = 150136

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 261   caaaaaacaaccaagaaccaaaaac 285
             |||||||||||||| ||||||||||
Sbjct: 51763 caaaaaacaaccaaaaaccaaaaac 51739
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>dbj|AK030169.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933408D05 product:weakly similar to
            SUMO-1/SMT3-SPECIFIC ISOPEPTIDASE 2 [Mus musculus], full
            insert sequence
          Length = 2424

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 261  caaaaaacaaccaagaaccaaaaac 285
            |||||||||||||| ||||||||||
Sbjct: 1611 caaaaaacaaccaacaaccaaaaac 1587
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>gb|AC017006.4| Homo sapiens BAC clone RP11-110G2 from 2, complete sequence
          Length = 191953

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   aggaaaagctttacaaaggaa 225
             |||||||||||||||||||||
Sbjct: 98757 aggaaaagctttacaaaggaa 98777
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>gb|AC114905.10| Mus musculus chromosome 1, clone RP24-127K21, complete sequence
          Length = 168918

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 262   aaaaaacaaccaagaaccaaaaact 286
             ||||||||||||| |||||||||||
Sbjct: 38523 aaaaaacaaccaaaaaccaaaaact 38547
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     ggcgacaagccatcgtcctca 46
              |||||||||||||||||||||
Sbjct: 275744 ggcgacaagccatcgtcctca 275764
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>gb|AC120136.9| Mus musculus chromosome 1, clone RP23-277E3, complete sequence
          Length = 190159

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 262    aaaaaacaaccaagaaccaaaaact 286
              ||||||||||||| |||||||||||
Sbjct: 177288 aaaaaacaaccaaaaaccaaaaact 177312
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>gb|AC139186.4| Mus musculus BAC clone RP24-92D20 from 8, complete sequence
          Length = 206436

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 261   caaaaaacaaccaagaaccaaaaac 285
             |||||||||||||| ||||||||||
Sbjct: 64038 caaaaaacaaccaacaaccaaaaac 64062
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>gb|AC133456.11| Mus musculus chromosome 5, clone RP24-465G18, complete sequence
          Length = 162210

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   caatcaccacctgtggcaag 325
             ||||||||||||||||||||
Sbjct: 43811 caatcaccacctgtggcaag 43792
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>gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosome 17, complete
             sequence
          Length = 169205

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   caaccaagaaccaaaaacta 287
             ||||||||||||||||||||
Sbjct: 21980 caaccaagaaccaaaaacta 21961
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>gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosome 14, complete sequence
          Length = 197419

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    cgtcttttctcatgaatcta 375
              ||||||||||||||||||||
Sbjct: 138028 cgtcttttctcatgaatcta 138009
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>gb|AC113328.5| Mus musculus chromosome 3, clone RP23-456E2, complete sequence
          Length = 168421

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    tttctttctccctatctcct 400
              ||||||||||||||||||||
Sbjct: 164832 tttctttctccctatctcct 164813
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>gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome 7, complete sequence
          Length = 175603

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    aaaaaacaaccaagaaccaaaaac 285
              ||||||||||||| ||||||||||
Sbjct: 110097 aaaaaacaaccaaaaaccaaaaac 110074
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>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence
          Length = 180642

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    aaaaaacaaccaagaaccaaaaac 285
              ||||||||||||| ||||||||||
Sbjct: 123246 aaaaaacaaccaaaaaccaaaaac 123223
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>gb|AC146451.3| Pan troglodytes BAC clone RP43-1L21 from 7, complete sequence
          Length = 161524

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 243    agattaagattttgggggcaaaaa 266
              ||||||| ||||||||||||||||
Sbjct: 102136 agattaatattttgggggcaaaaa 102113
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>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence
          Length = 230675

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   aaaaaacaaccaagaaccaaaaac 285
             ||||||||||||| ||||||||||
Sbjct: 23693 aaaaaacaaccaaaaaccaaaaac 23670
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>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    caaataaaggagcgtaaata 161
              ||||||||||||||||||||
Sbjct: 556574 caaataaaggagcgtaaata 556593
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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 262   aaaaaacaaccaagaaccaaaaac 285
             ||||||||||||| ||||||||||
Sbjct: 47864 aaaaaacaaccaaaaaccaaaaac 47887
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>gb|AC111141.7| Mus musculus chromosome 3, clone RP23-369G12, complete sequence
          Length = 241179

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    tttctttctccctatctcct 400
              ||||||||||||||||||||
Sbjct: 184531 tttctttctccctatctcct 184550
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>gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome 14, complete sequence
          Length = 191747

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    cgtcttttctcatgaatcta 375
              ||||||||||||||||||||
Sbjct: 189826 cgtcttttctcatgaatcta 189845
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>gb|AC161223.4| Mus musculus chromosome 3, clone RP24-173A7, complete sequence
          Length = 156824

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   caaaaaacaaccaagaaccaaaaa 284
             |||||||||||||| |||||||||
Sbjct: 54135 caaaaaacaaccaaaaaccaaaaa 54112
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>emb|AL390035.10| Human DNA sequence from clone RP13-9D14 on chromosome X Contains the 5'
              end of gene KIAA2022 and a CpG island, complete sequence
          Length = 148057

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    tttctttctccctatctcct 400
              ||||||||||||||||||||
Sbjct: 143543 tttctttctccctatctcct 143524
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>gb|AC015920.14| Homo sapiens chromosome 17, clone CTD-3022L24, complete sequence
          Length = 150453

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   aagattttgggggcaaaaaa 267
             ||||||||||||||||||||
Sbjct: 56559 aagattttgggggcaaaaaa 56540
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>emb|AL118508.27|HSJ737E23 Human DNA sequence from clone RP4-737E23 on chromosome 20p11.1-11.23
            Contains the gene complement component C1q receptor
            (C1QR), a putative novel gene, ESTs, STSs and GSSs,
            complete sequence
          Length = 123832

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   aagagaacatcatcatccaa 102
            ||||||||||||||||||||
Sbjct: 8930 aagagaacatcatcatccaa 8949
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>gb|AC164153.2| Mus musculus chromosome 3, clone RP23-370M4, complete sequence
          Length = 187100

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    tttctttctccctatctcct 400
              ||||||||||||||||||||
Sbjct: 186287 tttctttctccctatctcct 186268
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>gb|AC140930.3| Mus musculus BAC clone RP23-116P20 from chromosome 12, complete sequence
          Length = 201455

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    aaaaaacaaccaagaaccaaaaac 285
              ||||||||||| ||||||||||||
Sbjct: 106808 aaaaaacaacccagaaccaaaaac 106785
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>gb|AC115085.4| Homo sapiens chromosome 17, clone RP11-280F10, complete sequence
          Length = 163229

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   aagattttgggggcaaaaaa 267
             ||||||||||||||||||||
Sbjct: 34558 aagattttgggggcaaaaaa 34577
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>gb|AC008835.6| Homo sapiens chromosome 5 clone CTD-2148E3, complete sequence
          Length = 129046

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   agattaagattttgggggcaaaaa 266
             ||||||| ||||||||||||||||
Sbjct: 22910 agattaatattttgggggcaaaaa 22933
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>gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosome 17, complete
             sequence
          Length = 198374

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   caaccaagaaccaaaaacta 287
             ||||||||||||||||||||
Sbjct: 17109 caaccaagaaccaaaaacta 17128
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>gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, complete sequence
          Length = 212104

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    tttctttctccctatctcct 400
              ||||||||||||||||||||
Sbjct: 183517 tttctttctccctatctcct 183536
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>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 184175

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    tcatgccaactgcaatctgg 599
              ||||||||||||||||||||
Sbjct: 108784 tcatgccaactgcaatctgg 108765
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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    caaataaaggagcgtaaata 161
              ||||||||||||||||||||
Sbjct: 553867 caaataaaggagcgtaaata 553886
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>gb|AC156630.6| Mus musculus BAC clone RP24-556B7 from chromosome 7, complete sequence
          Length = 205753

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   aaaaaacaaccaagaaccaaaaac 285
             ||||||||||||| ||||||||||
Sbjct: 76960 aaaaaacaaccaaaaaccaaaaac 76937
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>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete
              sequence
          Length = 318665

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    tcatgccaactgcaatctgg 599
              ||||||||||||||||||||
Sbjct: 135673 tcatgccaactgcaatctgg 135654
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>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence
          Length = 217425

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    aaaaaacaaccaagaaccaaaaac 285
              ||||||||||||| ||||||||||
Sbjct: 191787 aaaaaacaaccaaaaaccaaaaac 191764
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>gb|AC132625.3| Mus musculus BAC clone RP23-101M7 from 1, complete sequence
          Length = 183691

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aaccaagaaccaaaaactaa 288
             ||||||||||||||||||||
Sbjct: 21615 aaccaagaaccaaaaactaa 21596
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>gb|AC131673.4| Mus musculus BAC clone RP23-321P21 from 1, complete sequence
          Length = 262190

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    aaccaagaaccaaaaactaa 288
              ||||||||||||||||||||
Sbjct: 216385 aaccaagaaccaaaaactaa 216366
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>emb|AL954296.9| Mouse DNA sequence from clone RP23-272P2 on chromosome X, complete
             sequence
          Length = 88296

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 262   aaaaaacaaccaagaaccaaaaac 285
             |||||| |||||||||||||||||
Sbjct: 42256 aaaaaaaaaccaagaaccaaaaac 42279
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>emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chromosome X, complete
             sequence
          Length = 225435

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   aaaaaacaaccaagaaccaaaaac 285
             ||||||||||||| ||||||||||
Sbjct: 24037 aaaaaacaaccaaaaaccaaaaac 24014
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>emb|AL732526.8| Mouse DNA sequence from clone RP23-338O4 on chromosome 2, complete
              sequence
          Length = 165825

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    gtccagtggctcaaccacat 564
              ||||||||||||||||||||
Sbjct: 119566 gtccagtggctcaaccacat 119585


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,041,509
Number of Sequences: 3902068
Number of extensions: 6041509
Number of successful extensions: 127725
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127493
Number of HSP's gapped (non-prelim): 228
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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