ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23o07 |
|---|---|
| Clone Library Name | barley_pub |
>UCR6_SOLTU (P48502) Ubiquinol-cytochrome c reductase complex 14 kDa protein| (EC 1.10.2.2) (CR14) Length = 123 Score = 96.3 bits (238), Expect = 2e-20 Identities = 44/57 (77%), Positives = 55/57 (96%) Frame = -3 Query: 350 LKRAMDLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERKALGALPLYERTLP 180 L RAMDLSMKHQYLP+D++A+QTPF++YL +MLALVK+E+AER+ALGALPLY+RTLP Sbjct: 67 LLRAMDLSMKHQYLPEDLQAMQTPFRNYLQEMLALVKRESAEREALGALPLYQRTLP 123
>UCR6_MOUSE (Q9D855) Ubiquinol-cytochrome c reductase complex 14 kDa protein| (EC 1.10.2.2) (Complex III subunit VI) Length = 110 Score = 35.4 bits (80), Expect = 0.035 Identities = 19/44 (43%), Positives = 25/44 (56%) Frame = -3 Query: 350 LKRAMDLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERK 219 +KRA+DL+M+HQ LP D K YL L V +E ER+ Sbjct: 62 IKRALDLTMRHQILPKDQWTKYEEDKFYLEPYLKEVIRERKERE 105
>UCR6_BOVIN (P00129) Ubiquinol-cytochrome c reductase complex 14 kDa protein| (EC 1.10.2.2) (Complex III subunit VI) Length = 110 Score = 34.3 bits (77), Expect = 0.077 Identities = 19/44 (43%), Positives = 25/44 (56%) Frame = -3 Query: 350 LKRAMDLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERK 219 +KRA+DLSM+ Q LP + KSYL L V +E ER+ Sbjct: 62 IKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERKERE 105
>UCR6_PONPY (Q5RC24) Ubiquinol-cytochrome c reductase complex 14 kDa protein| (EC 1.10.2.2) (Complex III subunit VI) Length = 110 Score = 33.1 bits (74), Expect = 0.17 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = -3 Query: 350 LKRAMDLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERK 219 +KRA+DLS+KHQ LP + YL L V +E ER+ Sbjct: 62 IKRALDLSLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERE 105
>SSY1_ORYSA (Q40739) Soluble starch synthase 1, chloroplast precursor (EC| 2.4.1.21) (Starch synthase I) (SSS 1) Length = 626 Score = 32.7 bits (73), Expect = 0.22 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = -2 Query: 315 VPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKTFYLICATVFAP 139 V P+ RPG +Q++ R + G A +P+PL + P L TF + +T AP Sbjct: 15 VAPQVRPGRRLRLQRVRRRCVAELSRDGGSAHGPLAPAPLVKQPVLPTFLVPTSTPPAP 73
>DPOL_ADE40 (P48311) DNA polymerase (EC 2.7.7.7)| Length = 1188 Score = 32.3 bits (72), Expect = 0.29 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Frame = -2 Query: 327 HEAPVPPRRR-----PGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKTFYL 163 H P PPRRR G A T + R A + G + + P N SL Sbjct: 18 HSGPQPPRRRVRQSTAGAAPTATRAPRRRAATASPGEPPSTTASGRPPAANNVSLTPNSR 77 Query: 162 ICATVFAPR 136 + T+ APR Sbjct: 78 LRGTIVAPR 86
>UCR6_HUMAN (P14927) Ubiquinol-cytochrome c reductase complex 14 kDa protein| (EC 1.10.2.2) (Complex III subunit VI) (QP-C) Length = 110 Score = 32.0 bits (71), Expect = 0.38 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 350 LKRAMDLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERK 219 +KRA+DL++KHQ LP + YL L V +E ER+ Sbjct: 62 IKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERE 105
>SYT_GEOKA (Q5KWD2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 652 Score = 32.0 bits (71), Expect = 0.38 Identities = 11/41 (26%), Positives = 25/41 (60%) Frame = -3 Query: 335 DLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERKAL 213 D+ M+H+ PDD+ ++ + + + L +V+KE + +A+ Sbjct: 108 DIDMEHKLTPDDLPKIEAEMRKIVKENLDIVRKEVSREEAI 148
>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 31.6 bits (70), Expect = 0.50 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = -2 Query: 351 PQARHGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPL 196 P R P + P+P R R G G G +GG+RA P PL Sbjct: 28 PSVRQTPSRQPPLPHRSRGG-------------GGGSRGGARASPATQPPPL 66
>Y409_MYCPN (P75375) Very hypothetical adhesin P1-like protein MPN409| (F11_orf533L) Length = 533 Score = 31.6 bits (70), Expect = 0.50 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -2 Query: 294 GTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKT 172 G +D F+ GSG++GGS S G+P L+++ K+ Sbjct: 100 GQSDENHTTFKSATGSGQQGGSSGTSAGNPDSLKQDKISKS 140
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 31.2 bits (69), Expect = 0.65 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -2 Query: 297 PGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLK 175 P ++D +Q+L GEKG + AES S P ++P L+ Sbjct: 2597 PASSDRLQQLGGGETDQGEKGSTTAESEASGPPSPQSPLLE 2637
>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 326 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 144 QKQWRISSKMSSRKGSLVEGKGSQCFPLCCLLFHQSQH 257 +K+WR+ +S R+GSL E S+ PLC L + +H Sbjct: 246 RKEWRLHRGLSHRRGSLEERAVSR-NPLCTLCLEERRH 282
>IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 828 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 13/69 (18%) Frame = -2 Query: 351 PQARHGPXHEAP---VPPRRRPGTADTIQKLFERHAGSGEKG----------GSRAESTG 211 P R G +AP +PP + I +LF RH G G G GS A + G Sbjct: 520 PLKRRGSMEQAPAVALPPTHKKQYQQIISRLFHRHGGPGPGGPEPELSPITEGSEARA-G 578 Query: 210 SPSPLRENP 184 P+P P Sbjct: 579 PPAPAPPAP 587
>EPHA8_MOUSE (O09127) Ephrin type-A receptor 8 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EEK) (EPH- and ELK-related kinase) Length = 1004 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/69 (26%), Positives = 27/69 (39%) Frame = -2 Query: 300 RPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKTFYLICATVFAPRSITMH 121 +PGT Q AG G + TG P P + +T IC T+ + + Sbjct: 502 KPGTRYVFQVRARTSAGCGRFSQAMEVETGKPRPRYDT---RTIVWICLTLITGLVVLLL 558 Query: 120 EIXCRS*HC 94 + C+ HC Sbjct: 559 LLICKKRHC 567
>EPHA8_HUMAN (P29322) Ephrin type-A receptor 8 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EEK) (EPH- and ELK-related kinase) (HEK3) Length = 1005 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/69 (26%), Positives = 27/69 (39%) Frame = -2 Query: 300 RPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKTFYLICATVFAPRSITMH 121 +PGT Q AG G + TG P P + +T IC T+ + + Sbjct: 503 KPGTRYVFQVRARTSAGCGRFSQAMEVETGKPRPRYDT---RTIVWICLTLITGLVVLLL 559 Query: 120 EIXCRS*HC 94 + C+ HC Sbjct: 560 LLICKKRHC 568
>TF3C4_HUMAN (Q9UKN8) General transcription factor 3C polypeptide 4 (EC| 2.3.1.48) (Transcription factor IIIC-delta subunit) (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90) Length = 822 Score = 30.0 bits (66), Expect = 1.5 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 20/100 (20%) Frame = -2 Query: 348 QARHGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSP--------LR 193 QAR GP + P P G G GE GG + +P P R Sbjct: 6 QARVGPADDGPAPSGEEEGE------------GGGEAGGKEPAADAAPGPSAAFRLMVTR 53 Query: 192 ENPSLKTFYLIC------------ATVFAPRSITMHEIXC 109 P++K Y + +V RSI + E+ C Sbjct: 54 REPAVKLQYAVSGLEPLAWSEDHRVSVSTARSIAVLELIC 93
>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = -2 Query: 351 PQARHGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPL 196 P R P +P+P R R G G G +GG+RA P PL Sbjct: 28 PSVRLTPSRPSPLPHRSRGG-------------GGGPRGGARASPATQPPPL 66
>IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 824 Score = 29.3 bits (64), Expect = 2.5 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%) Frame = -2 Query: 351 PQARHGPXHEAP---VPPRRRPGTADTIQKLFERHAGSGEKG----------GSRAESTG 211 P R G ++P +PP + I +LF RH G G G GS A + G Sbjct: 516 PLKRRGSMEQSPAVALPPTHKKQYQQIINRLFHRHGGPGPGGPEPELSTITEGSEARA-G 574 Query: 210 SPSPLRENP 184 P+P P Sbjct: 575 PPAPAPPAP 583
>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = -2 Query: 351 PQARHGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPL 196 P R P +P+P R R G G G +GG+RA P PL Sbjct: 28 PSVRLTPSRPSPLPHRPRGG-------------GGGPRGGARASPATQPPPL 66
>IF2_ZYMMO (Q5NQ27) Translation initiation factor IF-2| Length = 989 Score = 28.9 bits (63), Expect = 3.2 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 7/83 (8%) Frame = -2 Query: 333 PXHEAPVPPRRRPGTADTIQ--KLFERHAGSGEKGGSRAESTGSPSPLRE-----NPSLK 175 P EAP P R D Q KL A SG++GG+RA S + RE N + Sbjct: 342 PRREAPRPAMRDRKGEDRRQSGKLTVTKALSGDEGGARARSLAALRRAREKDKRANQNRA 401 Query: 174 TFYLICATVFAPRSITMHEIXCR 106 V P +IT+ E+ R Sbjct: 402 QQVRQIRDVVVPEAITVQELANR 424
>PYRE_DEIRA (Q9RX68) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)| (OPRTase) Length = 194 Score = 28.9 bits (63), Expect = 3.2 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +3 Query: 195 VEGKGSQCFPLCCLLFHQSQ 254 VEG+G QC LCC++ + Q Sbjct: 138 VEGQGGQCIGLCCIIDRRQQ 157
>AT10A_HUMAN (O60312) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)| (ATPVA) (Aminophospholipid translocase VA) Length = 1499 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/54 (37%), Positives = 24/54 (44%) Frame = -2 Query: 321 APVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKTFYLI 160 AP P PG A + G E+ RA STG +PL SL TF L+ Sbjct: 1390 APAPMSSAPGEA-----VLRSPGGCPEESKVRAASTGRVTPLSSLFSLPTFSLL 1438
>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion| defective protein 3) Length = 1409 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/63 (31%), Positives = 26/63 (41%) Frame = -2 Query: 360 HQLPQARHGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPS 181 H++ Q+ P PVPPR P I K G+ K E +P PL P Sbjct: 953 HEIAQSTRSPALPPPVPPREAP----PIPKRNPPPLGAPPK---VPEGARAPPPLPPRPK 1005 Query: 180 LKT 172 +KT Sbjct: 1006 VKT 1008
>TNP7_ECOLI (P13694) Transposase for transposon Tn3926| Length = 990 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -2 Query: 252 GSGEKGGSRAESTGSPSPLRENPSLKTFYLICATVFAPRSITMHEIXCR 106 G + GS+AESTG +P + +TFY + +AP S + + R Sbjct: 682 GQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPFSAKVVNVGIR 730
>SYK_THEMA (Q9X231) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 502 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -3 Query: 347 KRAMDLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERKALGALP 201 K MDL +H + D V PFKS ++ V++ KAL LP Sbjct: 93 KEKMDLFKRHVKIGDFVGVRGFPFKSKTGELTIYVQEYTLLSKALRPLP 141
>LIPA3_HUMAN (O75145) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1194 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = -2 Query: 312 PPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKT 172 PP R + + + AGS E GG S G+P L + P K+ Sbjct: 716 PPTPRSARLERMTQALALQAGSLEDGGPPRGSEGTPDSLHKAPKKKS 762
>CCNB3_HUMAN (Q8WWL7) G2/mitotic-specific cyclin-B3| Length = 1395 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = -2 Query: 318 PVPPRRRPGTADTIQ--KLFERHAGSGEKGGSRAESTGSPSPLRENPS 181 P+PP+ Q K+ H EK G ++ SPS L+E+PS Sbjct: 4 PLPPQSSKPVPKKSQSSKIVPSHHDPSEKTGENCQTKISPSSLQESPS 51
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3| Length = 410 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = -2 Query: 360 HQLPQARHGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSP 205 + +P + GP + P P +R GTA + ++ H G G GSP Sbjct: 283 YAIPTSYPGPLNSCPPPQKRYAGTA-AVTPEYDTHPLQGNGGYGTPHLQGSP 333
>SPRL_LISMO (Q8Y8K2) Protein sprT-like| Length = 155 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -2 Query: 159 CATVFAPRSITMHEIXCRS 103 CAT+ PR ITMHE C+S Sbjct: 101 CATI--PREITMHEYTCKS 117
>SPRL_LISMF (Q721R7) Protein sprT-like| Length = 155 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -2 Query: 159 CATVFAPRSITMHEIXCRS 103 CAT+ PR ITMHE C+S Sbjct: 101 CATI--PREITMHEYTCKS 117
>ENL_HUMAN (Q03111) Protein ENL| Length = 559 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -2 Query: 336 GPXHEAPVPPR---RRPGTADTIQKLFERHAGSGEKGGSRAEST 214 GP P PPR +RP TAD+ + ++ S KG A T Sbjct: 271 GPPPPPPPPPRASSKRPATADSPKPSAKKQKKSSSKGSRSAPGT 314
>OPTN_MACMU (Q861Q8) Optineurin| Length = 571 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -2 Query: 243 EKGGSRAESTGSPSPLRENPSLKTF 169 EKG S +ESTG+ P +P+L TF Sbjct: 11 EKGDSPSESTGNGPPHLAHPNLDTF 35
>OPTN_MACFA (Q95KA2) Optineurin| Length = 571 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -2 Query: 243 EKGGSRAESTGSPSPLRENPSLKTF 169 EKG S +ESTG+ P +P+L TF Sbjct: 11 EKGDSPSESTGNGPPHLAHPNLDTF 35
>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (BND3L) Length = 1241 Score = 27.7 bits (60), Expect = 7.2 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Frame = -2 Query: 360 HQLPQARHGPXHEAPV-PPRRRPGTA-----DTIQKLFERHAGSGEKGGSRAESTGSPSP 199 H P AR + P PRRRPG + TI++ E + E G+RA + PSP Sbjct: 88 HLPPDARRRKTPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARALT--QPSP 145 Query: 198 LRENPSLKTFYL 163 + PS F+L Sbjct: 146 V-STPSSVQFFL 156
>EXOC7_HUMAN (Q9UPT5) Exocyst complex component 7 (Exocyst complex component| Exo70) Length = 735 Score = 27.7 bits (60), Expect = 7.2 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Frame = -2 Query: 309 PRRRPGT---ADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLKTFYLICATVFAP 139 P +RPGT A + K + +H G+KGGS P L ++ A V A Sbjct: 265 PVKRPGTIRKAQNLLKQYSQHGLDGKKGGSNLIPLEGLLPCTPRGGLPGPWINAACVCAA 324 Query: 138 RSITMHEIXCRS*HCS 91 HE R H S Sbjct: 325 DISPGHEHDFRVKHLS 340
>RCO1_NEUCR (P78706) Transcriptional repressor rco-1| Length = 604 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Frame = -2 Query: 351 PQARHGPXH-------EAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSP 199 PQ + P H + P PP P Q+ ++ G G +ST SP P Sbjct: 135 PQQQEQPAHMPAPPGLQGPPPPPPPPSQQPPFQQQYQGPQGPGNFPPQPPQSTASPGP 192
>XKDU_BACSU (P54340) Phage-like element PBSX protein xkdU| Length = 192 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 305 DDVRALQTPFKSYLSDMLALVKKEAAE 225 DD+RA PF + L +M L+K EA E Sbjct: 5 DDMRAYLPPFLTSLKEMAELLKAEAPE 31
>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 27.3 bits (59), Expect = 9.4 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 16/66 (24%) Frame = -2 Query: 351 PQARHG----PXHEAPVPPRRRPGT------------ADTIQKLFERHAGSGEKGGSRAE 220 P HG P PVPP RR T A+ K F SG G AE Sbjct: 2307 PPLVHGCPLPPPKPTPVPPPRRKRTVVLDESTVSSALAELATKTFGSSTTSGVTSGEAAE 2366 Query: 219 STGSPS 202 S+ +PS Sbjct: 2367 SSPAPS 2372
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = -2 Query: 339 HGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRENPSLK 175 H P E VPP+ P Q L S + GGS + SP P E + K Sbjct: 980 HEPPREDTVPPKPVPPVPPPTQHLQPEGDVSQQSGGSPRGKSRSPVPPAEKEAEK 1034
>SYT_OCEIH (Q8EPF3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 646 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/40 (25%), Positives = 22/40 (55%) Frame = -3 Query: 335 DLSMKHQYLPDDVRALQTPFKSYLSDMLALVKKEAAERKA 216 D+ M+H+ P+D+ ++ K + + L + + E + KA Sbjct: 107 DIDMEHKLTPEDLPKIEKEMKRIIDENLEIKRVEVSRNKA 146
>ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 5) (ADAM-TS 5) (ADAM-TS5) (Aggrecanase-2) (ADMP-2) (ADAM-TS 11) Length = 930 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = -2 Query: 357 QLPQARHGPXHEAPVPPRRRPGTADTIQKLFERHAGSGEKGGSRAESTGSPSPLRE 190 +LP A GP A P + + G T + GE+ RAE G P PL + Sbjct: 14 RLPLAAVGP---AATPAQDKAGQPPTAAAAAQPRRRQGEEVQERAEPPGHPHPLAQ 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,250,271 Number of Sequences: 219361 Number of extensions: 993843 Number of successful extensions: 3242 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 3104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3239 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
