ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
2dbj|AK059301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
5gb|AY109833.1| Zea mays CL9125_1 mRNA sequence 78 2e-11
6gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 5.3
7ref|XM_713752.1| Candida albicans SC5314 putative glutamate synt... 40 5.3
8ref|XM_713667.1| Candida albicans SC5314 putative glutamate synt... 40 5.3
9gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome... 40 5.3
10gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, comple... 40 5.3
11gb|AC159186.4| Mus musculus BAC clone RP24-281N15 from chromosom... 40 5.3
12emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in ... 40 5.3 
>dbj|AK071777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114K10, full
            insert sequence
          Length = 1874

 Score =  105 bits (53), Expect = 1e-19
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                        
Query: 247  ctcagctttgcataaactgcctttcacggaagatctccccaagttgctggtacaaggatt 306
            ||||||| ||||| || |||||||||||| |||| |||||||| ||||| || ||| |||
Sbjct: 1520 ctcagctctgcattaattgcctttcacggtagatttccccaagctgctgatataagaatt 1461

                                                                        
Query: 307  tctgctcctcgtaggttaggtttcttacaatctgatccaagattgtgtcaacagagaaat 366
            ||||||||||  ||||||| ||||||| |||||| |||||||||   ||||||||| | |
Sbjct: 1460 tctgctcctcaaaggttagatttcttagaatctgttccaagattagctcaacagagtagt 1401

                                           
Query: 367  tgtggggcnagataaatgattgnagatatat 397
            | |||||| | || ||||||||  |||||||
Sbjct: 1400 tttggggcgatatgaatgattggtgatatat 1370



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 98   ctaaaccctatccacactccgttctgtacaatggtttggataaggacatcactctatcac 157
            |||||||| ||||||||||  ||||||||||||||||||| | |||| |  ||||||| |
Sbjct: 1663 ctaaaccccatccacactctattctgtacaatggtttggaaagggacgttgctctatcgc 1604

                                        
Query: 158  ggtacagaggagctatgatgctgtacat 185
             |||||||| ||||||| |||| |||||
Sbjct: 1603 cgtacagagaagctatgctgctatacat 1576
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>dbj|AK059301.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F05, full
            insert sequence
          Length = 1828

 Score =  105 bits (53), Expect = 1e-19
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                        
Query: 247  ctcagctttgcataaactgcctttcacggaagatctccccaagttgctggtacaaggatt 306
            ||||||| ||||| || |||||||||||| |||| |||||||| ||||| || ||| |||
Sbjct: 1456 ctcagctctgcattaattgcctttcacggtagatttccccaagctgctgatataagaatt 1397

                                                                        
Query: 307  tctgctcctcgtaggttaggtttcttacaatctgatccaagattgtgtcaacagagaaat 366
            ||||||||||  ||||||| ||||||| |||||| |||||||||   ||||||||| | |
Sbjct: 1396 tctgctcctcaaaggttagatttcttagaatctgttccaagattagctcaacagagtagt 1337

                                           
Query: 367  tgtggggcnagataaatgattgnagatatat 397
            | |||||| | || ||||||||  |||||||
Sbjct: 1336 tttggggcgatatgaatgattggtgatatat 1306



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 98   ctaaaccctatccacactccgttctgtacaatggtttggataaggacatcactctatcac 157
            |||||||| ||||||||||  ||||||||||||||||||| | |||| |  ||||||| |
Sbjct: 1599 ctaaaccccatccacactctattctgtacaatggtttggaaagggacgttgctctatcgc 1540

                                        
Query: 158  ggtacagaggagctatgatgctgtacat 185
             |||||||| ||||||| |||| |||||
Sbjct: 1539 cgtacagagaagctatgctgctatacat 1512
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 81/94 (86%)
 Strand = Plus / Plus

                                                                            
Query: 247      ctcagctttgcataaactgcctttcacggaagatctccccaagttgctggtacaaggatt 306
                ||||||| ||||| || |||||||||||| |||| |||||||| ||||| || ||| |||
Sbjct: 31864563 ctcagctctgcattaattgcctttcacggtagatttccccaagctgctgatataagaatt 31864622

                                                  
Query: 307      tctgctcctcgtaggttaggtttcttacaatctg 340
                ||||||||||  ||||||| ||||||| ||||||
Sbjct: 31864623 tctgctcctcaaaggttagatttcttagaatctg 31864656



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                            
Query: 98       ctaaaccctatccacactccgttctgtacaatggtttggataaggacatcactctatcac 157
                |||||||| ||||||||||  ||||||||||||||||||| | |||| |  ||||||| |
Sbjct: 31864420 ctaaaccccatccacactctattctgtacaatggtttggaaagggacgttgctctatcgc 31864479

                                            
Query: 158      ggtacagaggagctatgatgctgtacat 185
                 |||||||| ||||||| |||| |||||
Sbjct: 31864480 cgtacagagaagctatgctgctatacat 31864507
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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1131G08
          Length = 158241

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 81/94 (86%)
 Strand = Plus / Plus

                                                                         
Query: 247   ctcagctttgcataaactgcctttcacggaagatctccccaagttgctggtacaaggatt 306
             ||||||| ||||| || |||||||||||| |||| |||||||| ||||| || ||| |||
Sbjct: 50641 ctcagctctgcattaattgcctttcacggtagatttccccaagctgctgatataagaatt 50700

                                               
Query: 307   tctgctcctcgtaggttaggtttcttacaatctg 340
             ||||||||||  ||||||| ||||||| ||||||
Sbjct: 50701 tctgctcctcaaaggttagatttcttagaatctg 50734



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                         
Query: 98    ctaaaccctatccacactccgttctgtacaatggtttggataaggacatcactctatcac 157
             |||||||| ||||||||||  ||||||||||||||||||| | |||| |  ||||||| |
Sbjct: 50498 ctaaaccccatccacactctattctgtacaatggtttggaaagggacgttgctctatcgc 50557

                                         
Query: 158   ggtacagaggagctatgatgctgtacat 185
              |||||||| ||||||| |||| |||||
Sbjct: 50558 cgtacagagaagctatgctgctatacat 50585
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>gb|AY109833.1| Zea mays CL9125_1 mRNA sequence
          Length = 653

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                  
Query: 310 gctcctcgtaggttaggtttcttacaatctgatccaagattgtgtcaacagagaa 364
           ||||||| |||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct: 377 gctcctcataggttaggtttcttataatctgatccaagattatctcaacagagaa 431
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 256     gcataaactgcctttcacgg 275
               ||||||||||||||||||||
Sbjct: 2542164 gcataaactgcctttcacgg 2542183
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>ref|XM_713752.1| Candida albicans SC5314 putative glutamate synthase (CaO19_6257),
            mRNA
          Length = 6333

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  tacaatctgatccaagattg 351
            ||||||||||||||||||||
Sbjct: 1487 tacaatctgatccaagattg 1506
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>ref|XM_713667.1| Candida albicans SC5314 putative glutamate synthase (CaO19_13636),
            mRNA
          Length = 6381

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  tacaatctgatccaagattg 351
            ||||||||||||||||||||
Sbjct: 1535 tacaatctgatccaagattg 1554
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>gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome 14, complete sequence
          Length = 199036

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   gcaaataaatcctcagcttt 255
             ||||||||||||||||||||
Sbjct: 87554 gcaaataaatcctcagcttt 87573
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>gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, complete sequence
          Length = 208360

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    ttgcataaactgcctttcac 273
              ||||||||||||||||||||
Sbjct: 116381 ttgcataaactgcctttcac 116400
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>gb|AC159186.4| Mus musculus BAC clone RP24-281N15 from chromosome 12, complete
             sequence
          Length = 180125

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   aatcctcagctttgcataaa 262
             ||||||||||||||||||||
Sbjct: 25174 aatcctcagctttgcataaa 25193
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>emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in linkage group 16,
              complete sequence
          Length = 213678

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    cagctttgcataaactgcct 268
              ||||||||||||||||||||
Sbjct: 178652 cagctttgcataaactgcct 178671


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,842,615
Number of Sequences: 3902068
Number of extensions: 2842615
Number of successful extensions: 46948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46904
Number of HSP's gapped (non-prelim): 44
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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