ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY167563.1| Hordeum vulgare subsp. vulgare GAMYB-binding prot... 1090 0.0
2ref|XM_467904.1| Oryza sativa (japonica cultivar-group), mRNA 234 3e-58
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
4dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
5dbj|AK071666.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
6dbj|AK067153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
7gb|DQ112540.1| Glycine max GAMYB-binding protein mRNA, complete cds 80 1e-11
8dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone... 80 1e-11
9emb|AL050350.14|HSDJ261K5 Human DNA sequence from clone RP1-261K... 50 0.009
10gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence 50 0.009
11ref|XM_465437.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
12ref|XM_476720.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
13gb|AC142169.2| Homo sapiens fosmid clone XXFOS-81770D1 from 7, c... 42 2.1
14gb|AC183679.3| Pan troglodytes BAC clone CH251-400O3 from chromo... 42 2.1
15emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chrom... 42 2.1
16emb|AL445488.4| Human DNA sequence from clone RP11-552D8 on chro... 42 2.1
17gb|AF279795.1| Cycas taitungensis maturase K (matK) gene, comple... 42 2.1
18ref|NM_166663.1| Drosophila melanogaster CG13569-RB, transcript ... 42 2.1
19dbj|AB076238.2| Cycas pectinata chloroplast matK gene for matura... 42 2.1
20dbj|AB076236.2| Cycas multipinnata chloroplast matK gene for mat... 42 2.1
21dbj|AB076235.2| Cycas micholitzii chloroplast matK gene for matu... 42 2.1
22dbj|AB076233.2| Cycas thouarsii chloroplast matK gene for matura... 42 2.1
23dbj|AB076231.2| Cycas taitungensis chloroplast matK gene for mat... 42 2.1
24ref|NM_138044.2| Drosophila melanogaster CG13569-RA, transcript ... 42 2.1
25gb|AY075160.1| Drosophila melanogaster AT03911 full length cDNA 42 2.1
26gb|AC161538.7| Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer... 42 2.1
27gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cance... 42 2.1
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
29gb|AC012167.5|AC012167 Drosophila melanogaster, chromosome 2R, r... 42 2.1
30gb|AF143440.1|AF143440 Cycas panzhihuaensis trnK gene, partial s... 42 2.1
31dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
32dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
33dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
34dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
35gb|AE003463.2| Drosophila melanogaster chromosome 2R, section 70... 42 2.1
36gb|AF036382.1|AF036382 Fugu rubripes MLL (MLL) gene, complete cds 42 2.1
37emb|AL672059.7| Mouse DNA sequence from clone RP23-279A13 on chr... 42 2.1
38emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chrom... 42 2.1
39gb|M98552.2| Caenorhabditis elegans cosmid ZK370, complete sequence 40 8.4
40gb|AC122795.3| Mus musculus BAC clone RP24-226D9 from chromosome... 40 8.4
41gb|AC124175.2| Mus musculus BAC clone RP23-183N18 from 1, comple... 40 8.4
42gb|CP000001.1| Bacillus cereus E33L, complete genome 40 8.4
43emb|AL353689.26| Human DNA sequence from clone RP5-1087E8 on chr... 40 8.4
44gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's H... 40 8.4
45gb|AC156389.5| Mus musculus 10 BAC RP24-308P8 (Roswell Park Canc... 40 8.4
46gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complet... 40 8.4
47gb|AC092505.2| Homo sapiens chromosome 3 clone RP11-644G8, compl... 40 8.4
48gb|AC158623.5| Mus musculus 10 BAC RP23-302A11 (Roswell Park Can... 40 8.4
49dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
50gb|AY818308.1| Bacillus thuringiensis strain Bt 407 cereolysin O... 40 8.4
51gb|AC084493.1|CBRG08J21 Caenorhabditis briggsae cosmid G08J21, c... 40 8.4
52dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
53emb|AL671400.5| Mouse DNA sequence from clone RP23-109C6 on chro... 40 8.4
54emb|AL355835.3|CNS05TCP Human chromosome 14 DNA sequence BAC R-1... 40 8.4
55emb|AL161751.3|CNS01RHG Human chromosome 14 DNA sequence BAC R-9... 40 8.4
56gb|AC136517.3| Mus musculus BAC clone RP23-259O15 from 1, comple... 40 8.4
57dbj|AB060840.1| Macaca fascicularis brain cDNA clone:QtrA-10909,... 40 8.4 
>gb|AY167563.1| Hordeum vulgare subsp. vulgare GAMYB-binding protein (gbp5) mRNA,
            partial cds
          Length = 1878

 Score = 1090 bits (550), Expect = 0.0
 Identities = 558/561 (99%)
 Strand = Plus / Minus

                                                                        
Query: 54   agcctatgtaacatgtgtaacgacaaagttcatggatcttgtcacaaagatacacaccat 113
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1876 agcctatgtaacatgtgtaacgacaaagttcatggatcttgtcacaaagatacacatcat 1817

                                                                        
Query: 114  acaagcattgtaggatctaataagtaggtacacagtttaacacgatggttgaaatataac 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 acaagcattgtaggatctaataagtaggtacacagtttaacacgatggttgaaatataac 1757

                                                                        
Query: 174  aagcagccagatcacagcaactaaaaccatcaggatcatccttacgtaagaaagatcata 233
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1756 aagcagccagatcacagcaactaaaaccatcaggatcatccttacctaagaaagatcata 1697

                                                                        
Query: 234  ttctccatagaaatccttcagtgttgatatttgagttcttccttgtgtaagaaggatcat 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 ttctccatagaaatccttcagtgttgatatttgagttcttccttgtgtaagaaggatcat 1637

                                                                        
Query: 294  attctccaaagaaatccttcaggatgatatttgaaaatgcactgagaacatgagaatgca 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 attctccaaagaaatccttcaggatgatatttgaaaatgcactgagaacatgagaatgca 1577

                                                                        
Query: 354  gaagataaacgtgcacaacaaatacctcaacgtcctcctctttcaaagttaatgcgagac 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 gaagataaacgtgcacaacaaatacctcaacgtcctcctctttcaaagttaatgcgagac 1517

                                                                        
Query: 414  ctcccagatcctccgccctcgtaatcatccctagaggatccaccacttgccttcatagtt 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 ctcccagatcctccgccctcgtaatcatccctagaggatccaccacttgccttcatagtt 1457

                                                                        
Query: 474  cctccgccaccaatcttgtccacagctttctttcccttcttcacctcagtcaagaactgg 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 cctccgccaccaatcttgtccacagctttctttcccttcttcacctcagtcaagaactgg 1397

                                                                        
Query: 534  tcaagaccgaatggatcagcctcctcttgcttatcaaactccacgggtctatctctcttg 593
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 tcaagacngaatggatcagcctcctcttgcttatcaaactccacgggtctatctctcttg 1337

                                 
Query: 594  ccagccctctctggagcacca 614
            |||||||||||||||||||||
Sbjct: 1336 ccagccctctctggagcacca 1316
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>ref|XM_467904.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2354

 Score =  234 bits (118), Expect = 3e-58
 Identities = 201/228 (88%), Gaps = 3/228 (1%)
 Strand = Plus / Minus

                                                                        
Query: 390  cctctttcaaagttaatgcgagacctcccagatcctccgccctcgtaatcatcccta--- 446
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||    
Sbjct: 1948 cctctttcaaagttaatgcgggacctcccagatcctccaccctcgtaatcatctctcatt 1889

                                                                        
Query: 447  gaggatccaccacttgccttcatagttcctccgccaccaatcttgtccacagctttcttt 506
            |||||||||||||||||| |||| | ||||||||  |||||||| || ||||||||||| 
Sbjct: 1888 gaggatccaccacttgccctcatggctcctccgcttccaatcttctcaacagctttcttc 1829

                                                                        
Query: 507  cccttcttcacctcagtcaagaactggtcaagaccgaatggatcagcctcctcttgctta 566
            ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||| || |||
Sbjct: 1828 cccttcttcacttcagtcaagaactgatcaagaccgaagggatcattctcctcctgttta 1769

                                                            
Query: 567  tcaaactccacgggtctatctctcttgccagccctctctggagcacca 614
            ||||||||||| ||||| |||||||| |||| |||||||| |||||||
Sbjct: 1768 tcaaactccacaggtctgtctctctttccagacctctctgaagcacca 1721
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  234 bits (118), Expect = 3e-58
 Identities = 201/228 (88%), Gaps = 3/228 (1%)
 Strand = Plus / Plus

                                                                            
Query: 390      cctctttcaaagttaatgcgagacctcccagatcctccgccctcgtaatcatcccta--- 446
                |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||    
Sbjct: 32014243 cctctttcaaagttaatgcgggacctcccagatcctccaccctcgtaatcatctctcatt 32014302

                                                                            
Query: 447      gaggatccaccacttgccttcatagttcctccgccaccaatcttgtccacagctttcttt 506
                |||||||||||||||||| |||| | ||||||||  |||||||| || ||||||||||| 
Sbjct: 32014303 gaggatccaccacttgccctcatggctcctccgcttccaatcttctcaacagctttcttc 32014362

                                                                            
Query: 507      cccttcttcacctcagtcaagaactggtcaagaccgaatggatcagcctcctcttgctta 566
                ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||| || |||
Sbjct: 32014363 cccttcttcacttcagtcaagaactgatcaagaccgaagggatcattctcctcctgttta 32014422

                                                                
Query: 567      tcaaactccacgggtctatctctcttgccagccctctctggagcacca 614
                ||||||||||| ||||| |||||||| |||| |||||||| |||||||
Sbjct: 32014423 tcaaactccacaggtctgtctctctttccagacctctctgaagcacca 32014470



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 501      ttctttcccttcttcacctca 521
                |||||||||||||||||||||
Sbjct: 15155656 ttctttcccttcttcacctca 15155636



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 501      ttctttcccttcttcacctca 521
                |||||||||||||||||||||
Sbjct: 11495105 ttctttcccttcttcacctca 11495085



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 501      ttctttcccttcttcacctca 521
                |||||||||||||||||||||
Sbjct: 11491441 ttctttcccttcttcacctca 11491421
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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1175_B01
          Length = 96191

 Score =  234 bits (118), Expect = 3e-58
 Identities = 201/228 (88%), Gaps = 3/228 (1%)
 Strand = Plus / Plus

                                                                         
Query: 390   cctctttcaaagttaatgcgagacctcccagatcctccgccctcgtaatcatcccta--- 446
             |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||    
Sbjct: 34618 cctctttcaaagttaatgcgggacctcccagatcctccaccctcgtaatcatctctcatt 34677

                                                                         
Query: 447   gaggatccaccacttgccttcatagttcctccgccaccaatcttgtccacagctttcttt 506
             |||||||||||||||||| |||| | ||||||||  |||||||| || ||||||||||| 
Sbjct: 34678 gaggatccaccacttgccctcatggctcctccgcttccaatcttctcaacagctttcttc 34737

                                                                         
Query: 507   cccttcttcacctcagtcaagaactggtcaagaccgaatggatcagcctcctcttgctta 566
             ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||| || |||
Sbjct: 34738 cccttcttcacttcagtcaagaactgatcaagaccgaagggatcattctcctcctgttta 34797

                                                             
Query: 567   tcaaactccacgggtctatctctcttgccagccctctctggagcacca 614
             ||||||||||| ||||| |||||||| |||| |||||||| |||||||
Sbjct: 34798 tcaaactccacaggtctgtctctctttccagacctctctgaagcacca 34845
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>dbj|AK071666.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106G20, full
            insert sequence
          Length = 1657

 Score =  234 bits (118), Expect = 3e-58
 Identities = 201/228 (88%), Gaps = 3/228 (1%)
 Strand = Plus / Minus

                                                                        
Query: 390  cctctttcaaagttaatgcgagacctcccagatcctccgccctcgtaatcatcccta--- 446
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||    
Sbjct: 1316 cctctttcaaagttaatgcgggacctcccagatcctccaccctcgtaatcatctctcatt 1257

                                                                        
Query: 447  gaggatccaccacttgccttcatagttcctccgccaccaatcttgtccacagctttcttt 506
            |||||||||||||||||| |||| | ||||||||  |||||||| || ||||||||||| 
Sbjct: 1256 gaggatccaccacttgccctcatggctcctccgcttccaatcttctcaacagctttcttc 1197

                                                                        
Query: 507  cccttcttcacctcagtcaagaactggtcaagaccgaatggatcagcctcctcttgctta 566
            ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||| || |||
Sbjct: 1196 cccttcttcacttcagtcaagaactgatcaagaccgaagggatcattctcctcctgttta 1137

                                                            
Query: 567  tcaaactccacgggtctatctctcttgccagccctctctggagcacca 614
            ||||||||||| ||||| |||||||| |||| |||||||| |||||||
Sbjct: 1136 tcaaactccacaggtctgtctctctttccagacctctctgaagcacca 1089
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>dbj|AK067153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098N03, full
            insert sequence
          Length = 2354

 Score =  234 bits (118), Expect = 3e-58
 Identities = 201/228 (88%), Gaps = 3/228 (1%)
 Strand = Plus / Minus

                                                                        
Query: 390  cctctttcaaagttaatgcgagacctcccagatcctccgccctcgtaatcatcccta--- 446
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||    
Sbjct: 1948 cctctttcaaagttaatgcgggacctcccagatcctccaccctcgtaatcatctctcatt 1889

                                                                        
Query: 447  gaggatccaccacttgccttcatagttcctccgccaccaatcttgtccacagctttcttt 506
            |||||||||||||||||| |||| | ||||||||  |||||||| || ||||||||||| 
Sbjct: 1888 gaggatccaccacttgccctcatggctcctccgcttccaatcttctcaacagctttcttc 1829

                                                                        
Query: 507  cccttcttcacctcagtcaagaactggtcaagaccgaatggatcagcctcctcttgctta 566
            ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||| || |||
Sbjct: 1828 cccttcttcacttcagtcaagaactgatcaagaccgaagggatcattctcctcctgttta 1769

                                                            
Query: 567  tcaaactccacgggtctatctctcttgccagccctctctggagcacca 614
            ||||||||||| ||||| |||||||| |||| |||||||| |||||||
Sbjct: 1768 tcaaactccacaggtctgtctctctttccagacctctctgaagcacca 1721
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>gb|DQ112540.1| Glycine max GAMYB-binding protein mRNA, complete cds
          Length = 2223

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 445  tagaggatccaccacttgccttcatagttcctccgccaccaatcttgtccacagctttct 504
            |||| |||||| |||||||| ||||||| ||||| ||||| |  || ||||  || ||||
Sbjct: 1859 tagatgatccagcacttgccctcatagtccctccaccacccactttctccatggccttct 1800

                                                                
Query: 505  ttcccttcttcacctcagtcaagaactggtcaagaccgaatggatcagcctc 556
            | |||||||||||||||||||||||||| || | ||| || |||||||||||
Sbjct: 1799 tacccttcttcacctcagtcaagaactgatccaaaccaaacggatcagcctc 1748
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>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261,
              complete sequence
          Length = 121882

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                          
Query: 450    gatccaccacttgccttcatagttcctccgccaccaatcttgtccacagctttctttccc 509
              |||||| ||||||| |||||||||||||| ||||| |  || ||||  || ||||| |||
Sbjct: 116782 gatccagcacttgctttcatagttcctccaccacccactttctccatggccttcttaccc 116841

                                                          
Query: 510    ttcttcacctcagtcaagaactggtcaagaccgaatggatcagc 553
              ||||| ||||| ||||||||||| || ||||| |||||||||||
Sbjct: 116842 ttcttgacctctgtcaagaactgatccagaccaaatggatcagc 116885
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>emb|AL050350.14|HSDJ261K5 Human DNA sequence from clone RP1-261K5 on chromosome 6q21-22.1
            Contains the 3' end of the SLC22A16 gene for solute
            carrier family 22 (organic cation transporter) member 16,
            the DDO gene for D-aspartate oxidase, the 5' part of a
            novel gene and two CpG islands, complete sequence
          Length = 131974

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 294  attctccaaagaaatccttcaggat 318
            |||||||||||||||||||||||||
Sbjct: 1199 attctccaaagaaatccttcaggat 1223
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>gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence
          Length = 123805

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 294    attctccaaagaaatccttcaggat 318
              |||||||||||||||||||||||||
Sbjct: 114928 attctccaaagaaatccttcaggat 114952
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>ref|XM_465437.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 165

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 501 ttctttcccttcttcacctca 521
           |||||||||||||||||||||
Sbjct: 71  ttctttcccttcttcacctca 51
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>ref|XM_476720.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 519

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 175 agcagccagatcacagcaact 195
           |||||||||||||||||||||
Sbjct: 386 agcagccagatcacagcaact 366
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>gb|AC142169.2| Homo sapiens fosmid clone XXFOS-81770D1 from 7, complete sequence
          Length = 37728

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   gcagccagatcacagcaacta 196
             |||||||||||||||||||||
Sbjct: 26908 gcagccagatcacagcaacta 26888
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>gb|AC183679.3| Pan troglodytes BAC clone CH251-400O3 from chromosome 10, complete
              sequence
          Length = 203130

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 294    attctccaaagaaatccttcaggat 318
              ||||| |||||||||||||||||||
Sbjct: 188063 attcttcaaagaaatccttcaggat 188087
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>emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chromosome 10 Contains a
             novel gene and a novel MAM domain containing protein,
             complete sequence
          Length = 150889

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 294   attctccaaagaaatccttcaggat 318
             ||||| |||||||||||||||||||
Sbjct: 55493 attcttcaaagaaatccttcaggat 55517
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>emb|AL445488.4| Human DNA sequence from clone RP11-552D8 on chromosome 1 Contains the
             5' end of the FAM34A gene for family with sequence
             similarity 34 member A and a novel gene, complete sequence
          Length = 121717

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 294   attctccaaagaaatccttcaggat 318
             ||||| |||||||||||||||||||
Sbjct: 76436 attcttcaaagaaatccttcaggat 76460
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>gb|AF279795.1| Cycas taitungensis maturase K (matK) gene, complete cds; chloroplast
            gene for chloroplast product
          Length = 1563

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atattctccaaagaaatcctt 312
            |||||||||||||||||||||
Sbjct: 1484 atattctccaaagaaatcctt 1504
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>ref|NM_166663.1| Drosophila melanogaster CG13569-RB, transcript variant B (CG13569),
            mRNA
          Length = 2959

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 340  aacatgagaatgcagaagata 360
            |||||||||||||||||||||
Sbjct: 2194 aacatgagaatgcagaagata 2214
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>dbj|AB076238.2| Cycas pectinata chloroplast matK gene for maturase, complete cds,
            within trnK intron
          Length = 2480

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atattctccaaagaaatcctt 312
            |||||||||||||||||||||
Sbjct: 2229 atattctccaaagaaatcctt 2249
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>dbj|AB076236.2| Cycas multipinnata chloroplast matK gene for maturase, complete cds,
            within trnK intron
          Length = 2479

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atattctccaaagaaatcctt 312
            |||||||||||||||||||||
Sbjct: 2229 atattctccaaagaaatcctt 2249
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>dbj|AB076235.2| Cycas micholitzii chloroplast matK gene for maturase, complete cds,
            within trnK intron
          Length = 2476

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atattctccaaagaaatcctt 312
            |||||||||||||||||||||
Sbjct: 2229 atattctccaaagaaatcctt 2249
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>dbj|AB076233.2| Cycas thouarsii chloroplast matK gene for maturase, complete cds,
            within trnK intron
          Length = 2483

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atattctccaaagaaatcctt 312
            |||||||||||||||||||||
Sbjct: 2229 atattctccaaagaaatcctt 2249
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>dbj|AB076231.2| Cycas taitungensis chloroplast matK gene for maturase, complete cds,
            within trnK intron
          Length = 2493

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atattctccaaagaaatcctt 312
            |||||||||||||||||||||
Sbjct: 2238 atattctccaaagaaatcctt 2258
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>ref|NM_138044.2| Drosophila melanogaster CG13569-RA, transcript variant A (CG13569),
            mRNA
          Length = 2807

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 340  aacatgagaatgcagaagata 360
            |||||||||||||||||||||
Sbjct: 2042 aacatgagaatgcagaagata 2062
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>gb|AY075160.1| Drosophila melanogaster AT03911 full length cDNA
          Length = 3001

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 340  aacatgagaatgcagaagata 360
            |||||||||||||||||||||
Sbjct: 2194 aacatgagaatgcagaagata 2214
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>gb|AC161538.7| Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 211933

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 499   ctttctttcccttcttcacct 519
             |||||||||||||||||||||
Sbjct: 20683 ctttctttcccttcttcacct 20703
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>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207306

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 499   ctttctttcccttcttcacct 519
             |||||||||||||||||||||
Sbjct: 95557 ctttctttcccttcttcacct 95577
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 175     agcagccagatcacagcaact 195
               |||||||||||||||||||||
Sbjct: 3561692 agcagccagatcacagcaact 3561672
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>gb|AC012167.5|AC012167 Drosophila melanogaster, chromosome 2R, region 60B-60C, BAC clone
             BACR27M17, complete sequence
          Length = 164443

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   aacatgagaatgcagaagata 360
             |||||||||||||||||||||
Sbjct: 67563 aacatgagaatgcagaagata 67543
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>gb|AF143440.1|AF143440 Cycas panzhihuaensis trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast genes for chloroplast
            products
          Length = 2439

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  atattctccaaagaaatcctt 312
            |||||||||||||||||||||
Sbjct: 2231 atattctccaaagaaatcctt 2251
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>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0030M21
          Length = 155970

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   ttctttcccttcttcacctca 521
             |||||||||||||||||||||
Sbjct: 77597 ttctttcccttcttcacctca 77577



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   ttctttcccttcttcacctca 521
             |||||||||||||||||||||
Sbjct: 73933 ttctttcccttcttcacctca 73913
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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1641_C04
          Length = 134367

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   agcagccagatcacagcaact 195
             |||||||||||||||||||||
Sbjct: 31009 agcagccagatcacagcaact 30989
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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0039H02
          Length = 169162

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   agcagccagatcacagcaact 195
             |||||||||||||||||||||
Sbjct: 99642 agcagccagatcacagcaact 99622
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>dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0008C07
          Length = 146008

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   ttctttcccttcttcacctca 521
             |||||||||||||||||||||
Sbjct: 39431 ttctttcccttcttcacctca 39411
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>gb|AE003463.2| Drosophila melanogaster chromosome 2R, section 70 of 73 of the complete
             sequence
          Length = 298827

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   aacatgagaatgcagaagata 360
             |||||||||||||||||||||
Sbjct: 46359 aacatgagaatgcagaagata 46339
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>gb|AF036382.1|AF036382 Fugu rubripes MLL (MLL) gene, complete cds
          Length = 32900

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    atacagctttgaaattaacag 43
             |||||||||||||||||||||
Sbjct: 18079 atacagctttgaaattaacag 18059
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>emb|AL672059.7| Mouse DNA sequence from clone RP23-279A13 on chromosome X, complete
              sequence
          Length = 142461

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 242    agaaatccttcagtgttgata 262
              |||||||||||||||||||||
Sbjct: 118389 agaaatccttcagtgttgata 118369
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>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete
              sequence
          Length = 189829

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 490    tgtccacagctttctttccct 510
              |||||||||||||||||||||
Sbjct: 143797 tgtccacagctttctttccct 143777
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>gb|M98552.2| Caenorhabditis elegans cosmid ZK370, complete sequence
          Length = 38725

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   atatttgaaaatgcactgagaaca 343
             ||||||||||||||| ||||||||
Sbjct: 30620 atatttgaaaatgcattgagaaca 30643
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>gb|AC122795.3| Mus musculus BAC clone RP24-226D9 from chromosome 6, complete sequence
          Length = 146405

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   cagctttctttcccttcttc 515
             ||||||||||||||||||||
Sbjct: 85444 cagctttctttcccttcttc 85425
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>gb|AC124175.2| Mus musculus BAC clone RP23-183N18 from 1, complete sequence
          Length = 227946

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 595    cagccctctctggagcacca 614
              ||||||||||||||||||||
Sbjct: 200678 cagccctctctggagcacca 200659
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     atgcagaagataaacgtgca 368
               ||||||||||||||||||||
Sbjct: 4903325 atgcagaagataaacgtgca 4903306
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>emb|AL353689.26| Human DNA sequence from clone RP5-1087E8 on chromosome 1q42.11-42.2
              Contains the CABC1 gene for chaperone ABC1 activity of bc1
              complex like (S. pombe), a pseudogene similar to part of
              NADH dehydrogenase subunit 6 (ND6), a novel gene, the 3'
              end of the CDC42BPA gene for CDC42 binding protein kinase
              alpha (DMPK-like) and two CpG islands, complete sequence
          Length = 195829

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 295    ttctccaaagaaatccttcaggat 318
              |||| |||||||||||||||||||
Sbjct: 100925 ttcttcaaagaaatccttcaggat 100902
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>gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 238669

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 496    cagctttctttcccttcttcacct 519
              ||||||||| ||||||||||||||
Sbjct: 148488 cagctttctctcccttcttcacct 148511
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>gb|AC156389.5| Mus musculus 10 BAC RP24-308P8 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158029

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 484  caatcttgtccacagctttc 503
            ||||||||||||||||||||
Sbjct: 2138 caatcttgtccacagctttc 2119
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>gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complete sequence
          Length = 174347

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   gctttctttcccttcttcac 517
             ||||||||||||||||||||
Sbjct: 53478 gctttctttcccttcttcac 53497
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>gb|AC092505.2| Homo sapiens chromosome 3 clone RP11-644G8, complete sequence
          Length = 178977

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    aagatcatattctccataga 244
              ||||||||||||||||||||
Sbjct: 138563 aagatcatattctccataga 138544
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>gb|AC158623.5| Mus musculus 10 BAC RP23-302A11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 191932

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   caatcttgtccacagctttc 503
             ||||||||||||||||||||
Sbjct: 53430 caatcttgtccacagctttc 53449
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 507     cccttcttcacctcagtcaagaactggtcaag 538
               |||||||||| || |||||||||||| |||||
Sbjct: 6040249 cccttcttcatctgagtcaagaactgatcaag 6040218
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>gb|AY818308.1| Bacillus thuringiensis strain Bt 407 cereolysin O (clo) gene,
            complete cds
          Length = 3343

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  atgcagaagataaacgtgca 368
            ||||||||||||||||||||
Sbjct: 2833 atgcagaagataaacgtgca 2852
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>gb|AC084493.1|CBRG08J21 Caenorhabditis briggsae cosmid G08J21, complete sequence
          Length = 22787

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 acagcaactaaaaccatcag 206
           ||||||||||||||||||||
Sbjct: 506 acagcaactaaaaccatcag 525
to top
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644A02
          Length = 144954

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 507   cccttcttcacctcagtcaagaactggtcaag 538
             |||||||||| || |||||||||||| |||||
Sbjct: 44748 cccttcttcatctgagtcaagaactgatcaag 44717
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>emb|AL671400.5| Mouse DNA sequence from clone RP23-109C6 on chromosome X, complete
             sequence
          Length = 188391

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   atcagcctcctcttgcttat 567
             ||||||||||||||||||||
Sbjct: 65384 atcagcctcctcttgcttat 65365
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>emb|AL355835.3|CNS05TCP Human chromosome 14 DNA sequence BAC R-196N22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   gcactgagaacatgagaatg 351
             ||||||||||||||||||||
Sbjct: 63752 gcactgagaacatgagaatg 63771
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>emb|AL161751.3|CNS01RHG Human chromosome 14 DNA sequence BAC R-96D24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184692

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   gcactgagaacatgagaatg 351
             ||||||||||||||||||||
Sbjct: 99915 gcactgagaacatgagaatg 99934
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>gb|AC136517.3| Mus musculus BAC clone RP23-259O15 from 1, complete sequence
          Length = 220632

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 595    cagccctctctggagcacca 614
              ||||||||||||||||||||
Sbjct: 196069 cagccctctctggagcacca 196088
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>dbj|AB060840.1| Macaca fascicularis brain cDNA clone:QtrA-10909, full insert
           sequence
          Length = 2945

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 ttctccatagaaatccttca 253
           ||||||||||||||||||||
Sbjct: 933 ttctccatagaaatccttca 914


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,087,172
Number of Sequences: 3902068
Number of extensions: 6087172
Number of successful extensions: 134645
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134295
Number of HSP's gapped (non-prelim): 342
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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