ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24d01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472424.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 351 Score = 311 bits (157), Expect = 1e-81 Identities = 241/269 (89%) Strand = Plus / Minus Query: 202 ggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttg 261 ||||||||||| ||||||||||||||||||| ||||||||| ||| || |||||||||| Sbjct: 347 ggcagagtgtaatctccgcacttgtagccgacggggcggtcggcgatgttgcagcgcttg 288 Query: 262 gggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggagagcatg 321 ||||||| |||||||| || |||||||| |||||| || ||| ||| ||| |||||| Sbjct: 287 gggatggtgatggcgacctcgggcttgatcccggcgttcctggtcgtgctggacagcatg 228 Query: 322 acggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccg 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 acggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccg 168 Query: 382 ctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttcagcgcc 441 || ||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 167 ctcgacggcgtcgacttggggtccttggccgccgacgcgcacggcgccagcttcagcgcc 108 Query: 442 atcttgtccgcgggcgtcttcccgcactc 470 |||||||||| |||||| ||||||||| Sbjct: 107 atcttgtccggcggcgtcgccccgcactc 79
>dbj|AK110485.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-B02, full insert sequence Length = 3096 Score = 307 bits (155), Expect = 2e-80 Identities = 245/275 (89%) Strand = Plus / Minus Query: 196 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 255 ||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| || |||| Sbjct: 2801 gctcatggcagagtgtaatctccgcacttgtagccgacggggcggtcggcgatgttgcag 2742 Query: 256 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 315 ||||||||||||| |||||||| || |||||||| |||||| || ||| ||| ||| Sbjct: 2741 cgcttggggatggtgatggcgacctcgggcttgatcccggcgttcctggtcgtgctggac 2682 Query: 316 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 375 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2681 agcatgacggcgcagaggcacttggggctctgcttcccaatggtgtgcaccgccgtgcag 2622 Query: 376 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 435 |||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |||| Sbjct: 2621 cacccgctcgacggcgtcgacttggggtccttggccgccgacgcgcacggcgccagcttc 2562 Query: 436 agcgccatcttgtccgcgggcgtcttcccgcactc 470 |||||||||||||||| |||||| ||||||||| Sbjct: 2561 agcgccatcttgtccggcggcgtcgccccgcactc 2527
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 301 bits (152), Expect = 1e-78 Identities = 230/256 (89%) Strand = Plus / Minus Query: 215 ctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatgg 274 ||||||||||||||||||| ||||||||| ||| || ||||||||||||||||| |||| Sbjct: 63499 ctccgcacttgtagccgacggggcggtcggcgatgttgcagcgcttggggatggtgatgg 63440 Query: 275 cgacttccggcttgatgccggcgctcttggcggtgtcggagagcatgacggcgcagaggc 334 |||| || |||||||| |||||| || ||| ||| ||| ||||||||||||||||||| Sbjct: 63439 cgacctcgggcttgatcccggcgttcctggtcgtgctggacagcatgacggcgcagaggc 63380 Query: 335 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctggacggcgccg 394 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct: 63379 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctcgacggcgtcg 63320 Query: 395 acttggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgg 454 |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 63319 acttggggtccttggccgccgacgcgcacggcgccagcttcagcgccatcttgtccggcg 63260 Query: 455 gcgtcttcccgcactc 470 ||||| ||||||||| Sbjct: 63259 gcgtcgccccgcactc 63244 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 217 ccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatggcg 276 ||||||||||||||||| ||||||| | |||| | ||||||||||||||||| ||||| Sbjct: 67206 ccgcacttgtagccgacggggcggttggcgagtttgcagcgcttggggatggtgatggcc 67147 Query: 277 acttccggcttgatgccgg 295 || |||||||||| ||||| Sbjct: 67146 acctccggcttgacgccgg 67128 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 399 ggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgggcgt 458 |||||||||| ||||| |||||||||||||| ||||||||||| ||| ||||| ||||| Sbjct: 67021 ggggtcctgcgccgccttcgcgcacggcgccagcttcagcgccaccttctccgccggcgt 66962 Query: 459 cttcccgcact 469 ||| ||||||| Sbjct: 66961 cttgccgcact 66951
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 301 bits (152), Expect = 1e-78 Identities = 230/256 (89%) Strand = Plus / Minus Query: 215 ctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatgg 274 ||||||||||||||||||| ||||||||| ||| || ||||||||||||||||| |||| Sbjct: 20552871 ctccgcacttgtagccgacggggcggtcggcgatgttgcagcgcttggggatggtgatgg 20552812 Query: 275 cgacttccggcttgatgccggcgctcttggcggtgtcggagagcatgacggcgcagaggc 334 |||| || |||||||| |||||| || ||| ||| ||| ||||||||||||||||||| Sbjct: 20552811 cgacctcgggcttgatcccggcgttcctggtcgtgctggacagcatgacggcgcagaggc 20552752 Query: 335 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctggacggcgccg 394 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct: 20552751 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctcgacggcgtcg 20552692 Query: 395 acttggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgg 454 |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 20552691 acttggggtccttggccgccgacgcgcacggcgccagcttcagcgccatcttgtccggcg 20552632 Query: 455 gcgtcttcccgcactc 470 ||||| ||||||||| Sbjct: 20552631 gcgtcgccccgcactc 20552616 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 217 ccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatggcg 276 ||||||||||||||||| ||||||| | |||| | ||||||||||||||||| ||||| Sbjct: 20556578 ccgcacttgtagccgacggggcggttggcgagtttgcagcgcttggggatggtgatggcc 20556519 Query: 277 acttccggcttgatgccgg 295 || |||||||||| ||||| Sbjct: 20556518 acctccggcttgacgccgg 20556500 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 399 ggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgggcgt 458 |||||||||| ||||| |||||||||||||| ||||||||||| ||| ||||| ||||| Sbjct: 20556393 ggggtcctgcgccgccttcgcgcacggcgccagcttcagcgccaccttctccgccggcgt 20556334 Query: 459 cttcccgcact 469 ||| ||||||| Sbjct: 20556333 cttgccgcact 20556323
>gb|AY596595.1| Saccharum officinarum clone SCCCRZ2002G09, complete sequence Length = 720 Score = 287 bits (145), Expect = 2e-74 Identities = 244/277 (88%) Strand = Plus / Plus Query: 196 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 255 ||||| || |||||||| |||| |||||||||||||| |||||||||||||||| |||| Sbjct: 311 gctcatggaagagtgtaatctccacacttgtagccgacggggcggtcgacgaggttgcag 370 Query: 256 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 315 || |||||||||| |||||||| || | |||||| ||||||||||||||||||| ||| Sbjct: 371 cgtttggggatggtgatggcgacctcggccttgatcccggcgctcttggcggtgttggac 430 Query: 316 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 375 |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 431 agcatgacggcgcagaggcacttggggctctgcttcccgatgctgtgcaccgcgctgcag 490 Query: 376 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 435 || |||||||||||| || ||||||||| | ||||||||||||||||||||| |||| Sbjct: 491 caggagctggacggcgcggagctggggtcctccgccgccgacgcgcacggcgccagcttc 550 Query: 436 agcgccatcttgtccgcgggcgtcttcccgcactcgc 472 ||||||||| |||||| |||||| ||||||||||| Sbjct: 551 agcgccatcgtgtccggcggcgtcgccccgcactcgc 587
>gb|AY106805.1| Zea mays PCO131201 mRNA sequence Length = 760 Score = 248 bits (125), Expect = 1e-62 Identities = 239/277 (86%) Strand = Plus / Minus Query: 196 gctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcag 255 ||||| ||||||||||| |||||||||||||||| || ||||||||| |||||| |||| Sbjct: 433 gctcatggcagagtgtaatctccgcacttgtagccaacggggcggtcggcgaggttgcag 374 Query: 256 cgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggag 315 || |||||||||| |||||||| || | |||||| ||||||||| ||||||||| ||| Sbjct: 373 cgtttggggatggtgatggcgacctcggccttgatcccggcgctcctggcggtgttggac 314 Query: 316 agcatgacggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcag 375 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| Sbjct: 313 agcatgacggcgcagaggcacctggggctctgcttcccgatggcgtgcaccgcgctgcag 254 Query: 376 cacccgctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttc 435 || || |||||||||||| |||||||| | ||||||||||||||||||||| | || Sbjct: 253 caggagccggacggcgccgagccggggtcctccgccgccgacgcgcacggcgccagcctc 194 Query: 436 agcgccatcttgtccgcgggcgtcttcccgcactcgc 472 ||||||| | |||||| |||||| ||||||||||| Sbjct: 193 agcgccaccgtgtccggcggcgtcgccccgcactcgc 157
>ref|XM_475631.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 354 Score = 176 bits (89), Expect = 4e-41 Identities = 226/271 (83%), Gaps = 3/271 (1%) Strand = Plus / Minus Query: 202 ggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttg 261 ||||| ||||| ||||||||||||||||||| ||||||||| | | || |||||||||| Sbjct: 350 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291 Query: 262 gggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggagagcatg 321 ||||||| |||||||| ||||||||||| |||||| | |||| |||| ||| ||||| Sbjct: 290 gggatggtgatggcgacctccggcttgatcccggcgaccctggccgtgttggacagcatc 231 Query: 322 acggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccg 381 |||||||| ||||| |||||||||| |||||||||||||||||||| |||||| | | Sbjct: 230 acggcgcacaggcagctggggctctg---cccgatggtgtgcaccgccgagcagcagctg 174 Query: 382 ctggacggcgccgacttggggtcctgccccgccgacgcgcacggcgccaacttcagcgcc 441 || ||||||||||||| ||||| | | |||||||| |||||||||||| | ||||||| Sbjct: 173 ctcgacggcgccgactgcgggtcgtccgccgccgacacgcacggcgccagccgcagcgcc 114 Query: 442 atcttgtccgcgggcgtcttcccgcactcgc 472 | | ||| |||| || | |||||||||||| Sbjct: 113 acccggtcggcggacgccctcccgcactcgc 83
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 174 bits (88), Expect = 2e-40 Identities = 216/258 (83%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 215 ctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatgg 274 ||||||||||||||||||| ||||||||| | | || ||||||||||||||||| |||| Sbjct: 109618 ctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtgatgg 109677 Query: 275 cgacttccggcttgatgccggcgctcttggcggtgtcggagagcatgacggcgcagaggc 334 |||| ||||||||||| |||||| | |||| |||| ||| ||||| |||||||| |||| Sbjct: 109678 cgacctccggcttgatcccggcgaccctggccgtgttggacagcatcacggcgcacaggc 109737 Query: 335 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctggacggcgccg 394 | |||||||||| |||||||||||||||||||| |||||| | ||| |||||||||| Sbjct: 109738 agctggggctctg---cccgatggtgtgcaccgccgagcagcagctgctcgacggcgccg 109794 Query: 395 acttggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgg 454 ||| ||||| | | |||||||| |||||||||||| | |||||||| | ||| |||| Sbjct: 109795 actgcgggtcgtccgccgccgacacgcacggcgccagccgcagcgccacccggtcggcgg 109854 Query: 455 gcgtcttcccgcactcgc 472 || | |||||||||||| Sbjct: 109855 acgccctcccgcactcgc 109872
>gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0034O12, complete sequence Length = 156263 Score = 174 bits (88), Expect = 2e-40 Identities = 216/258 (83%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 215 ctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatgg 274 ||||||||||||||||||| ||||||||| | | || ||||||||||||||||| |||| Sbjct: 45767 ctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtgatgg 45826 Query: 275 cgacttccggcttgatgccggcgctcttggcggtgtcggagagcatgacggcgcagaggc 334 |||| ||||||||||| |||||| | |||| |||| ||| ||||| |||||||| |||| Sbjct: 45827 cgacctccggcttgatcccggcgaccctggccgtgttggacagcatcacggcgcacaggc 45886 Query: 335 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctggacggcgccg 394 | |||||||||| |||||||||||||||||||| |||||| | ||| |||||||||| Sbjct: 45887 agctggggctctg---cccgatggtgtgcaccgccgagcagcagctgctcgacggcgccg 45943 Query: 395 acttggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgg 454 ||| ||||| | | |||||||| |||||||||||| | |||||||| | ||| |||| Sbjct: 45944 actgcgggtcgtccgccgccgacacgcacggcgccagccgcagcgccacccggtcggcgg 46003 Query: 455 gcgtcttcccgcactcgc 472 || | |||||||||||| Sbjct: 46004 acgccctcccgcactcgc 46021
>gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1231_F08, complete sequence Length = 118049 Score = 174 bits (88), Expect = 2e-40 Identities = 216/258 (83%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 215 ctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatgg 274 ||||||||||||||||||| ||||||||| | | || ||||||||||||||||| |||| Sbjct: 47418 ctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtgatgg 47477 Query: 275 cgacttccggcttgatgccggcgctcttggcggtgtcggagagcatgacggcgcagaggc 334 |||| ||||||||||| |||||| | |||| |||| ||| ||||| |||||||| |||| Sbjct: 47478 cgacctccggcttgatcccggcgaccctggccgtgttggacagcatcacggcgcacaggc 47537 Query: 335 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctggacggcgccg 394 | |||||||||| |||||||||||||||||||| |||||| | ||| |||||||||| Sbjct: 47538 agctggggctctg---cccgatggtgtgcaccgccgagcagcagctgctcgacggcgccg 47594 Query: 395 acttggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgg 454 ||| ||||| | | |||||||| |||||||||||| | |||||||| | ||| |||| Sbjct: 47595 actgcgggtcgtccgccgccgacacgcacggcgccagccgcagcgccacccggtcggcgg 47654 Query: 455 gcgtcttcccgcactcgc 472 || | |||||||||||| Sbjct: 47655 acgccctcccgcactcgc 47672
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 174 bits (88), Expect = 2e-40 Identities = 216/258 (83%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 215 ctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatgg 274 ||||||||||||||||||| ||||||||| | | || ||||||||||||||||| |||| Sbjct: 3480136 ctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtgatgg 3480195 Query: 275 cgacttccggcttgatgccggcgctcttggcggtgtcggagagcatgacggcgcagaggc 334 |||| ||||||||||| |||||| | |||| |||| ||| ||||| |||||||| |||| Sbjct: 3480196 cgacctccggcttgatcccggcgaccctggccgtgttggacagcatcacggcgcacaggc 3480255 Query: 335 acttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccgctggacggcgccg 394 | |||||||||| |||||||||||||||||||| |||||| | ||| |||||||||| Sbjct: 3480256 agctggggctctg---cccgatggtgtgcaccgccgagcagcagctgctcgacggcgccg 3480312 Query: 395 acttggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgg 454 ||| ||||| | | |||||||| |||||||||||| | |||||||| | ||| |||| Sbjct: 3480313 actgcgggtcgtccgccgccgacacgcacggcgccagccgcagcgccacccggtcggcgg 3480372 Query: 455 gcgtcttcccgcactcgc 472 || | |||||||||||| Sbjct: 3480373 acgccctcccgcactcgc 3480390
>gb|AY108760.1| Zea mays PCO149616 mRNA sequence Length = 644 Score = 135 bits (68), Expect = 1e-28 Identities = 160/190 (84%), Gaps = 3/190 (1%) Strand = Plus / Minus Query: 202 ggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttg 261 ||||| ||||| ||||||||||||||||||| ||||||||| | | || |||||||||| Sbjct: 385 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 326 Query: 262 gggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggagagcatg 321 ||||||| |||||||| ||||||||||| ||||| | |||||||| |||| |||||| Sbjct: 325 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 266 Query: 322 acggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccg 381 |||||||| ||||| |||||||||| ||||||||||||||| || | |||||| | | Sbjct: 265 acggcgcacaggcagctggggctctg---cccgatggtgtgcacagcggagcagcagctg 209 Query: 382 ctggacggcg 391 |||| ||||| Sbjct: 208 ctggtcggcg 199
>gb|AY596571.1| Saccharum officinarum clone SCCCRZ1001H02, complete sequence Length = 610 Score = 131 bits (66), Expect = 2e-27 Identities = 164/196 (83%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 202 ggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttg 261 ||||| ||||| ||||||||||||||||||| ||||| ||| | | || |||||||||| Sbjct: 221 ggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgcttg 280 Query: 262 gggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggagagcatg 321 ||||||| |||||||| ||||||||||| ||||| | |||||||| |||| |||||| Sbjct: 281 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 340 Query: 322 acggcgcagaggcacttggggctctgcttcccgatggtgtgcaccgccgtgcagcacccg 381 |||||||| ||||| |||||||||| |||||||| |||||| |||| |||||| | | Sbjct: 341 acggcgcacaggcagctggggctctg---cccgatggcgtgcacggccgagcagcagctg 397 Query: 382 ctggacggcgccgact 397 |||| ||||| ||||| Sbjct: 398 ctggtcggcgtcgact 413
>gb|AY108051.1| Zea mays PCO108087 mRNA sequence Length = 692 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 217 ccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttggggatggacatggcg 276 ||||||||||||||||| |||||| | ||| | |||||||||||||||||| |||||| Sbjct: 408 ccgcacttgtagccgacggggcggctggcgatggcgcagcgcttggggatggtcatggcc 349 Query: 277 acttccggcttgatgccggcgctcttggcggtgtcggagagcatgacggcgcagaggcac 336 || | ||||||| |||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 348 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 289 Query: 337 ttgggg 342 |||||| Sbjct: 288 ttgggg 283
>ref|XM_472425.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 202 ggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcagcgcttg 261 ||||| ||||| || ||||||||||||||||| ||||||| | |||| | |||||||||| Sbjct: 356 ggcagcgtgtaagcgccgcacttgtagccgacggggcggttggcgagtttgcagcgcttg 297 Query: 262 gggatggacatggcgacttccggcttgatgccgg 295 ||||||| ||||| || |||||||||| ||||| Sbjct: 296 gggatggtgatggccacctccggcttgacgccgg 263 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 399 ggggtcctgccccgccgacgcgcacggcgccaacttcagcgccatcttgtccgcgggcgt 458 |||||||||| ||||| |||||||||||||| ||||||||||| ||| ||||| ||||| Sbjct: 156 ggggtcctgcgccgccttcgcgcacggcgccagcttcagcgccaccttctccgccggcgt 97 Query: 459 cttcccgcact 469 ||| ||||||| Sbjct: 96 cttgccgcact 86
>dbj|AK105208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H09, full insert sequence Length = 702 Score = 83.8 bits (42), Expect = 5e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 197 ctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcagc 256 |||| ||||| ||||||| || || ||||| |||| ||||||| | ||| | |||||| Sbjct: 433 ctcatggcagggtgtatgggccacatttgtaaccgatggggcggttggcgatggcgcagc 374 Query: 257 gcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggaga 316 |||||||||||| |||||| || | ||||||| |||||||||| ||||||| || | Sbjct: 373 gcttggggatggtcatggccacggcgggcttgacgccggcgctccgcgcggtgttcgaca 314 Query: 317 gcatgacggcgcagaggcacttgggg 342 ||||||||||||| |||||||||||| Sbjct: 313 gcatgacggcgcacaggcacttgggg 288 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 412 gccgacgcgcacggcgccaacttcagcgccatcttgtccgcggg 455 |||| |||||||||||||| ||| ||||||| || |||| |||| Sbjct: 221 gccgccgcgcacggcgccagcttaagcgccacctggtccacggg 178
>dbj|AK062916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H02, full insert sequence Length = 590 Score = 83.8 bits (42), Expect = 5e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 197 ctcacggcagagtgtatgctccgcacttgtagccgacagggcggtcgacgaggtcgcagc 256 |||| ||||| ||||||| || || ||||| |||| ||||||| | ||| | |||||| Sbjct: 433 ctcatggcagggtgtatgggccacatttgtaaccgatggggcggttggcgatggcgcagc 374 Query: 257 gcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgtcggaga 316 |||||||||||| |||||| || | ||||||| |||||||||| ||||||| || | Sbjct: 373 gcttggggatggtcatggccacggcgggcttgacgccggcgctccgcgcggtgttcgaca 314 Query: 317 gcatgacggcgcagaggcacttgggg 342 ||||||||||||| |||||||||||| Sbjct: 313 gcatgacggcgcacaggcacttgggg 288 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 412 gccgacgcgcacggcgccaacttcagcgccatcttgtccgcggg 455 |||| |||||||||||||| ||| ||||||| || |||| |||| Sbjct: 221 gccgccgcgcacggcgccagcttaagcgccacctggtccacggg 178
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 251 cgcagcgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgt 310 |||||||||||||||||| |||||| || | ||||||| |||||||||| ||||||| Sbjct: 36477699 cgcagcgcttggggatggtcatggccacggcgggcttgacgccggcgctccgcgcggtgt 36477758 Query: 311 cggagagcatgacggcgcagaggcacttgggg 342 || |||||||||||||| |||||||||||| Sbjct: 36477759 tcgacagcatgacggcgcacaggcacttgggg 36477790 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 412 gccgacgcgcacggcgccaacttcagcgccatcttgtccgcggg 455 |||| |||||||||||||| ||| ||||||| || |||| |||| Sbjct: 36477857 gccgccgcgcacggcgccagcttaagcgccacctggtccacggg 36477900
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0005H10 Length = 142885 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 251 cgcagcgcttggggatggacatggcgacttccggcttgatgccggcgctcttggcggtgt 310 |||||||||||||||||| |||||| || | ||||||| |||||||||| ||||||| Sbjct: 129538 cgcagcgcttggggatggtcatggccacggcgggcttgacgccggcgctccgcgcggtgt 129597 Query: 311 cggagagcatgacggcgcagaggcacttgggg 342 || |||||||||||||| |||||||||||| Sbjct: 129598 tcgacagcatgacggcgcacaggcacttgggg 129629 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 412 gccgacgcgcacggcgccaacttcagcgccatcttgtccgcggg 455 |||| |||||||||||||| ||| ||||||| || |||| |||| Sbjct: 129696 gccgccgcgcacggcgccagcttaagcgccacctggtccacggg 129739
>gb|AE006815.1| Sulfolobus solfataricus P2 section 174 of 272 of the complete genome Length = 14262 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 131 atttgtgctggataaacaacact 153 ||||||||||||||||||||||| Sbjct: 1493 atttgtgctggataaacaacact 1515
>emb|Y08256.1|SS100KBFR S.solfataricus 100 kbp DNA fragment Length = 100389 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 131 atttgtgctggataaacaacact 153 ||||||||||||||||||||||| Sbjct: 10704 atttgtgctggataaacaacact 10726
>emb|AL591048.7| Human DNA sequence from clone RP11-612M16 on chromosome 6, complete sequence Length = 75270 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 caacacaacacagaggcagta 86 ||||||||||||||||||||| Sbjct: 18992 caacacaacacagaggcagta 19012
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 atttgtgctggataaacaaca 151 ||||||||||||||||||||| Sbjct: 26975368 atttgtgctggataaacaaca 26975348
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 atttgtgctggataaacaaca 151 ||||||||||||||||||||| Sbjct: 28570 atttgtgctggataaacaaca 28550
>emb|AL158058.5|CNS01RGJ Human chromosome 14 DNA sequence BAC R-260G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180372 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 54 aaacacaggcaacaacacaacacag 78 ||||| ||||||||||||||||||| Sbjct: 11890 aaacaaaggcaacaacacaacacag 11866
>emb|AL133166.3|CNS01DU6 Human chromosome 14 DNA sequence BAC C-2010O1 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 105587 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 54 aaacacaggcaacaacacaacacag 78 ||||| ||||||||||||||||||| Sbjct: 95611 aaacaaaggcaacaacacaacacag 95587
>gb|AE017134.1| Yersinia pestis biovar Medievalis str. 91001 section 8 of 16 of the complete genome Length = 290029 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gtgtgcaccgccgtgcagca 377 |||||||||||||||||||| Sbjct: 191234 gtgtgcaccgccgtgcagca 191253
>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence Length = 171061 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 15081 cacagaggcagtacacctct 15100
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gtgtgcaccgccgtgcagca 377 |||||||||||||||||||| Sbjct: 2255402 gtgtgcaccgccgtgcagca 2255421
>gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, complete sequence Length = 142863 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 56160 cacagaggcagtacacctct 56179
>emb|X57310.1|NLPCBABC Nocardia lactamdurans pcbAB and pcbC genes for alpha-aminoadipyl-L-cysteinyl-D-valine synthetase and isopenicillin N synthase Length = 12004 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ggcggtgtcggagagcatga 322 |||||||||||||||||||| Sbjct: 4396 ggcggtgtcggagagcatga 4377
>emb|AL139397.8| Human DNA sequence from clone RP11-445O16 on chromosome Xp11.1-11.22 Contains the gene for a novel protein similar to spindlin, a novel gene, a spindlin 2 (SPIN2) pseudogene and a CpG island, complete sequence Length = 136839 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tgtgctggataaacaacact 153 |||||||||||||||||||| Sbjct: 134073 tgtgctggataaacaacact 134054
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gtgtgcaccgccgtgcagca 377 |||||||||||||||||||| Sbjct: 2503414 gtgtgcaccgccgtgcagca 2503433
>emb|AJ414151.1| Yersinia pestis strain CO92 complete genome; segment 11/20 Length = 334050 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gtgtgcaccgccgtgcagca 377 |||||||||||||||||||| Sbjct: 213159 gtgtgcaccgccgtgcagca 213178
>dbj|BS000633.3| Pan troglodytes chromosome Y clone: PTB-483C22, complete sequence Length = 129300 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 22445 cacagaggcagtacacctct 22426
>dbj|BS000665.1| Pan troglodytes chromosome Y clone:PTB-114E01, complete sequences Length = 178566 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 172941 cacagaggcagtacacctct 172922
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 20297723 cacagaggcagtacacctct 20297742
>gb|AY227909.1| Streptomyces ambofaciens strain DSM40697 cosmid 2B7 recombination region Length = 269 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ccgccgacgcgcacggcgcc 429 |||||||||||||||||||| Sbjct: 243 ccgccgacgcgcacggcgcc 224
>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete sequence Length = 200403 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 10577 cacagaggcagtacacctct 10558
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 gcgacttccggcttgatgccggcg 297 ||||||||||||| |||||||||| Sbjct: 3895779 gcgacttccggctcgatgccggcg 3895756
>gb|AC006989.3|AC006989 Homo sapiens BAC clone RP11-225B4 from Y, complete sequence Length = 157666 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 154955 cacagaggcagtacacctct 154936
>emb|Z82211.1|HS447N6 Human DNA sequence from clone RP3-447N6 on chromosome X, complete sequence Length = 132229 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tgtgctggataaacaacact 153 |||||||||||||||||||| Sbjct: 60393 tgtgctggataaacaacact 60374
>gb|AC108832.10| Mus musculus chromosome 7, clone RP23-242J3, complete sequence Length = 185083 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cacagaggcagtacacctct 93 |||||||||||||||||||| Sbjct: 140616 cacagaggcagtacacctct 140635
>gb|AC139108.3| Mus musculus BAC clone RP23-93M1 from 9, complete sequence Length = 269739 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gcatcaagtggcctcaaggc 197 |||||||||||||||||||| Sbjct: 111241 gcatcaagtggcctcaaggc 111260
>dbj|AP006132.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT41P23, TM0230, complete sequence Length = 91079 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ggcaacaacacaacacagag 80 |||||||||||||||||||| Sbjct: 6732 ggcaacaacacaacacagag 6713 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,394,221 Number of Sequences: 3902068 Number of extensions: 3394221 Number of successful extensions: 71252 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71002 Number of HSP's gapped (non-prelim): 243 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
