| Clone Name | rbags23n18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067F09, full insert sequence Length = 3799 Score = 307 bits (155), Expect = 2e-80 Identities = 382/459 (83%), Gaps = 3/459 (0%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| |||||||||||||||||||||||||| ||||||| Sbjct: 3577 cctgttacttcactgtaacaggacacggaagaggcccggctgtgcctgcgtatactgaat 3518 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 3517 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 3458 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 3457 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 3398 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| ||| Sbjct: 3397 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcagttgg 3338 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttggattctctgtngatatat 477 | ||| |||||||| | |||||||| || ||||||||||| | ||| || |||||| Sbjct: 3337 ggtattttgctcctgaaccaggccttgaaattctggcatttgaaatctttggcgatatac 3278 Query: 478 attttctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatt 537 | ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || || Sbjct: 3277 a---tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtt 3221 Query: 538 tagttcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgttcaanaag 597 |||||||||||||||||||||| ||||||||| || | | |||||||||||||| | ||| Sbjct: 3220 tagttcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgttccagaag 3161 Query: 598 tgcatgtcttanacttgcaaaatcatgaacttcgtcctt 636 ||||| | || ||||||||||||||| |||| ||||| Sbjct: 3160 cgcatgccgtaggcttgcaaaatcatgagcttcatcctt 3122 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 95 ctactcatctctgccatatacagta 119 ||||||||||||||||||||||||| Sbjct: 3685 ctactcatctctgccatatacagta 3661 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 attccgcaaattttacaacgt 22 ||||||||||||||||||||| Sbjct: 3781 attccgcaaattttacaacgt 3761
>dbj|AK068487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156N12, full insert sequence Length = 2169 Score = 307 bits (155), Expect = 2e-80 Identities = 382/459 (83%), Gaps = 3/459 (0%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 1948 cctgttacttcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaat 1889 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 1888 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 1829 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 1828 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 1769 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| Sbjct: 1768 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattgg 1709 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttggattctctgtngatatat 477 | ||| |||||||| | |||||||| || ||||||||||| | ||| || |||||| Sbjct: 1708 ggtattttgctcctgaaccaggccttgaaattctggcatttgaaatctttggcgatatac 1649 Query: 478 attttctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatt 537 | ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || || Sbjct: 1648 a---tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtt 1592 Query: 538 tagttcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgttcaanaag 597 |||||||||||||||||||||| ||||||||| || | | |||||||||||||| | ||| Sbjct: 1591 tagttcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgttccagaag 1532 Query: 598 tgcatgtcttanacttgcaaaatcatgaacttcgtcctt 636 ||||| | || ||||||||||||||| |||| ||||| Sbjct: 1531 cgcatgccgtaggcttgcaaaatcatgagcttcatcctt 1493 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 95 ctactcatctctgccatatacagta 119 ||||||||||||||||||||||||| Sbjct: 2056 ctactcatctctgccatatacagta 2032 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 attccgcaaattttacaacgt 22 ||||||||||||||||||||| Sbjct: 2151 attccgcaaattttacaacgt 2131
>dbj|AK060766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A09, full insert sequence Length = 1609 Score = 307 bits (155), Expect = 2e-80 Identities = 382/459 (83%), Gaps = 3/459 (0%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 1388 cctgttacttcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaat 1329 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 1328 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 1269 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 1268 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 1209 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| Sbjct: 1208 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattgg 1149 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttggattctctgtngatatat 477 | ||| |||||||| | |||||||| || ||||||||||| | ||| || |||||| Sbjct: 1148 ggtattttgctcctgaaccaggccttgaaattctggcatttgaaatctttggcgatatac 1089 Query: 478 attttctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatt 537 | ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || || Sbjct: 1088 a---tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtt 1032 Query: 538 tagttcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgttcaanaag 597 |||||||||||||||||||||| ||||||||| || | | |||||||||||||| | ||| Sbjct: 1031 tagttcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgttccagaag 972 Query: 598 tgcatgtcttanacttgcaaaatcatgaacttcgtcctt 636 ||||| | || ||||||||||||||| |||| ||||| Sbjct: 971 cgcatgccgtaggcttgcaaaatcatgagcttcatcctt 933 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 95 ctactcatctctgccatatacagta 119 ||||||||||||||||||||||||| Sbjct: 1496 ctactcatctctgccatatacagta 1472 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 attccgcaaattttacaacgt 22 ||||||||||||||||||||| Sbjct: 1591 attccgcaaattttacaacgt 1571
>dbj|AK061621.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H10, full insert sequence Length = 579 Score = 301 bits (152), Expect = 1e-78 Identities = 373/448 (83%), Gaps = 3/448 (0%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 546 cctgttacttcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaat 487 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 486 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 427 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 426 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 367 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| Sbjct: 366 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattgg 307 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttggattctctgtngatatat 477 | ||| |||||||| | |||||||| || ||||||||||| | ||| || |||||| Sbjct: 306 ggtattttgctcctgaaccaggccttgaaattctggcatttgaaatctttggcgatatac 247 Query: 478 attttctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatt 537 | ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || || Sbjct: 246 a---tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtt 190 Query: 538 tagttcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgttcaanaag 597 |||||||||||||||||||||| ||||||||| || | | |||||||||||||| | ||| Sbjct: 189 tagttcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgttccagaag 130 Query: 598 tgcatgtcttanacttgcaaaatcatga 625 ||||| | || ||||||||||||||| Sbjct: 129 cgcatgccgtaggcttgcaaaatcatga 102
>ref|XM_470539.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 297 bits (150), Expect = 2e-77 Identities = 374/450 (83%), Gaps = 3/450 (0%) Strand = Plus / Minus Query: 187 tcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaaggccgngctc 246 |||||| | |||||| ||||| |||||||||||||||||||| ||||||| |||| |||| Sbjct: 1746 tcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaatgccgtgctc 1687 Query: 247 caggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggttanatattat 306 |||||| |||||||||| ||||||||||| |||||| || ||||||| | | ||||||| Sbjct: 1686 caggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgcttgatattat 1627 Query: 307 gatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgttgagttcatt 366 ||| ||||||| || ||||| |||||||| || ||||||| || ||||||||| |||| Sbjct: 1626 gatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgttgagctcata 1567 Query: 367 gttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgcaggattctg 426 ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| | ||| || Sbjct: 1566 gttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattggggtattttg 1507 Query: 427 ctcctggatgaggccttgcaactctggcatttggattctctgtngatatatattttctct 486 |||||| | |||||||| || ||||||||||| | ||| || |||||| | ||||| Sbjct: 1506 ctcctgaaccaggccttgaaattctggcatttgaaatctttggcgatataca---tctct 1450 Query: 487 agccttctcctgagctaatctgctttggatagagtacagctccttaatatttagttcctt 546 |||||| |||||||||| ||||||||| | | ||| |||||||| || ||||||||||| Sbjct: 1449 agccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtttagttcctt 1390 Query: 547 tgctaaaggattgccaccagttagaaaagcttgcctatcctgttcaanaagtgcatgtct 606 ||||||||||||| ||||||||| || | | |||||||||||||| | ||| ||||| | Sbjct: 1389 tgctaaaggattggcaccagttaaaagaacctgcctatcctgttccagaagcgcatgccg 1330 Query: 607 tanacttgcaaaatcatgaacttcgtcctt 636 || ||||||||||||||| |||| ||||| Sbjct: 1329 taggcttgcaaaatcatgagcttcatcctt 1300
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 208 bits (105), Expect = 2e-50 Identities = 237/282 (84%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 4191693 cctgttacttcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaat 4191634 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 4191633 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 4191574 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 4191573 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 4191514 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| Sbjct: 4191513 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattgg 4191454 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttg 459 | ||| |||||||| | |||||||| || ||||||||||| Sbjct: 4191453 ggtattttgctcctgaaccaggccttgaaattctggcatttg 4191412 Score = 103 bits (52), Expect = 7e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 482 tctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatttagt 541 ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || |||||| Sbjct: 4190732 tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtttagt 4190673 Query: 542 tcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgt 589 |||||||||||||||||| ||||||||| || | | |||||||||||| Sbjct: 4190672 tcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgt 4190625 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 95 ctactcatctctgccatatacagta 119 ||||||||||||||||||||||||| Sbjct: 4191801 ctactcatctctgccatatacagta 4191777 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 attccgcaaattttacaacgt 22 ||||||||||||||||||||| Sbjct: 4191896 attccgcaaattttacaacgt 4191876
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 208 bits (105), Expect = 2e-50 Identities = 237/282 (84%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 4191802 cctgttacttcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaat 4191743 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 4191742 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 4191683 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 4191682 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 4191623 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| Sbjct: 4191622 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattgg 4191563 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttg 459 | ||| |||||||| | |||||||| || ||||||||||| Sbjct: 4191562 ggtattttgctcctgaaccaggccttgaaattctggcatttg 4191521 Score = 103 bits (52), Expect = 7e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 482 tctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatttagt 541 ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || |||||| Sbjct: 4190841 tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtttagt 4190782 Query: 542 tcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgt 589 |||||||||||||||||| ||||||||| || | | |||||||||||| Sbjct: 4190781 tcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgt 4190734 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 95 ctactcatctctgccatatacagta 119 ||||||||||||||||||||||||| Sbjct: 4191910 ctactcatctctgccatatacagta 4191886 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 attccgcaaattttacaacgt 22 ||||||||||||||||||||| Sbjct: 4192005 attccgcaaattttacaacgt 4191985
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 208 bits (105), Expect = 2e-50 Identities = 237/282 (84%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 92330 cctgttacttcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaat 92271 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 92270 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 92211 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 92210 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 92151 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| Sbjct: 92150 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattgg 92091 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttg 459 | ||| |||||||| | |||||||| || ||||||||||| Sbjct: 92090 ggtattttgctcctgaaccaggccttgaaattctggcatttg 92049 Score = 103 bits (52), Expect = 7e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 482 tctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatttagt 541 ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || |||||| Sbjct: 91369 tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtttagt 91310 Query: 542 tcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgt 589 |||||||||||||||||| ||||||||| || | | |||||||||||| Sbjct: 91309 tcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgt 91262 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 95 ctactcatctctgccatatacagta 119 ||||||||||||||||||||||||| Sbjct: 92438 ctactcatctctgccatatacagta 92414 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 attccgcaaattttacaacgt 22 ||||||||||||||||||||| Sbjct: 92533 attccgcaaattttacaacgt 92513
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 208 bits (105), Expect = 2e-50 Identities = 237/282 (84%) Strand = Plus / Minus Query: 178 cctgctacttcactgcagcaggacgcggaagaggcccggctgtgcctgcgtgtactgaag 237 |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||| Sbjct: 20308 cctgttacttcactgtaacaggacacggaaaaggcccggctgtgcctgcgtatactgaat 20249 Query: 238 gccgngctccaggagatactgctcgatggcggcggtcaacctcgcaggggtacgtgggtt 297 |||| |||||||||| |||||||||| ||||||||||| |||||| || ||||||| | | Sbjct: 20248 gccgtgctccaggaggtactgctcgacggcggcggtcagcctcgccggagtacgtgtgct 20189 Query: 298 anatattatgatggcctggagccggcggcccgtggatcgggcgatcttcctcctgttgtt 357 |||||||||| ||||||| || ||||| |||||||| || ||||||| || |||||| Sbjct: 20188 tgatattatgatcacctggagacgacggcctgtggatcgagcaatcttccgccggttgtt 20129 Query: 358 gagttcattgttcaggacgtgcatcgcctcacttgcatgaanaccacaaaggtcgattgc 417 ||| |||| ||||||| |||| |||||||| ||| | |||| |||||| ||||| |||| Sbjct: 20128 gagctcatagttcagggcgtgtatcgcctcgcttacgtgaagaccacacaggtcaattgg 20069 Query: 418 aggattctgctcctggatgaggccttgcaactctggcatttg 459 | ||| |||||||| | |||||||| || ||||||||||| Sbjct: 20068 ggtattttgctcctgaaccaggccttgaaattctggcatttg 20027 Score = 103 bits (52), Expect = 7e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 482 tctctagccttctcctgagctaatctgctttggatagagtacagctccttaatatttagt 541 ||||||||||| |||||||||| ||||||||| | | ||| |||||||| || |||||| Sbjct: 19347 tctctagccttttcctgagctagtctgctttgcaaattgtaaagctccttgatgtttagt 19288 Query: 542 tcctttgctaaaggattgccaccagttagaaaagcttgcctatcctgt 589 |||||||||||||||||| ||||||||| || | | |||||||||||| Sbjct: 19287 tcctttgctaaaggattggcaccagttaaaagaacctgcctatcctgt 19240 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 95 ctactcatctctgccatatacagta 119 ||||||||||||||||||||||||| Sbjct: 20416 ctactcatctctgccatatacagta 20392 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 attccgcaaattttacaacgt 22 ||||||||||||||||||||| Sbjct: 20511 attccgcaaattttacaacgt 20491
>gb|AY103711.1| Zea mays PCO092957 mRNA sequence Length = 1052 Score = 127 bits (64), Expect = 5e-26 Identities = 225/280 (80%) Strand = Plus / Minus Query: 222 cctgcgtgtactgaaggccgngctccaggagatactgctcgatggcggcggtcaacctcg 281 ||||||||||| |||||||| | |||| |||||||||||||| |||||| |||| ||| | Sbjct: 588 cctgcgtgtacagaaggccgtgttccatgagatactgctcgacggcggcagtcagccttg 529 Query: 282 caggggtacgtgggttanatattatgatggcctggagccggcggcccgtggatcgggcga 341 | ||||| || | | | ||||||| || ||||||| ||||| || || |||| ||| Sbjct: 528 ctggggtgcgggcgcttgatattatcataacctggagtcggcgaccggttgatctcacga 469 Query: 342 tcttcctcctgttgttgagttcattgttcaggacgtgcatcgcctcacttgcatgaanac 401 |||| || | ||||||||| || | |||||||||||| || ||||| || |||| || Sbjct: 468 tctttcttcggttgttgagctcgtagttcaggacgtgtattgcctcgctgatgtgaagac 409 Query: 402 cacaaaggtcgattgcaggattctgctcctggatgaggccttgcaactctggcatttgga 461 |||| || ||||||| ||||| ||||||||||||||||||||||| | ||| |||| | Sbjct: 408 cacagagatcgattgggggattttgctcctggatgaggccttgcaattgtggtgtttgta 349 Query: 462 ttctctgtngatatatattttctctagccttctcctgagc 501 ||| ||| ||||| | |||||||||||||||||||||| Sbjct: 348 atctttgtcgatatgttgtttctctagccttctcctgagc 309 Score = 54.0 bits (27), Expect = 6e-04 Identities = 46/53 (86%) Strand = Plus / Minus Query: 584 tcctgttcaanaagtgcatgtcttanacttgcaaaatcatgaacttcgtcctt 636 |||||||||| || |||||||| | |||||||||||||||||||| ||||| Sbjct: 283 tcctgttcaagaactgcatgtcgcaggcttgcaaaatcatgaacttcatcctt 231
>gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL), complete sequence Length = 79586 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 48605 cactgcagcaggacgcggaagag 48583
>ref|NM_021056.1| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 3, mRNA Length = 5411 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 2105 cactgcagcaggacgcggaagag 2083
>ref|NM_000548.2| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 1, mRNA Length = 5543 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 2105 cactgcagcaggacgcggaagag 2083
>ref|NM_021055.1| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 2, mRNA Length = 5414 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 2105 cactgcagcaggacgcggaagag 2083
>gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, complete sequence Length = 72483 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 19177 cactgcagcaggacgcggaagag 19199
>emb|BX647816.1|HSM807962 Homo sapiens mRNA; cDNA DKFZp686N1252 (from clone DKFZp686N1252) Length = 5107 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 1776 cactgcagcaggacgcggaagag 1754
>dbj|AB210000.1| Homo sapiens mRNA for SLC9A3R2 variant protein, partial cds, clone: eh00696 Length = 5421 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 2193 cactgcagcaggacgcggaagag 2171
>gb|L48531.1|HUMTSC2G15 Homo sapiens tuberin (TSC2) gene, exons 17, 18, and 19 Length = 1220 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 598 cactgcagcaggacgcggaagag 576
>emb|X75621.1|HSTSC2 Homo sapiens TSC2 mRNA for tuberin Length = 5543 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cactgcagcaggacgcggaagag 210 ||||||||||||||||||||||| Sbjct: 2105 cactgcagcaggacgcggaagag 2083
>ref|XM_515533.1| PREDICTED: Pan troglodytes adducin 2 (LOC459305), mRNA Length = 6774 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 4312 tctgctcctggatgaggcctt 4292
>gb|AC108777.7| Mus musculus chromosome 18, clone RP23-368H22, complete sequence Length = 216024 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 478 attttctctagccttctcctgagct 502 ||||||||||||||||| ||||||| Sbjct: 214077 attttctctagccttcttctgagct 214053
>ref|NM_017482.2| Homo sapiens adducin 2 (beta) (ADD2), transcript variant beta-2, mRNA Length = 3795 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 688 tctgctcctggatgaggcctt 668
>ref|NM_017488.2| Homo sapiens adducin 2 (beta) (ADD2), transcript variant beta-4, mRNA Length = 4043 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 688 tctgctcctggatgaggcctt 668
>ref|NM_017483.2| Homo sapiens adducin 2 (beta) (ADD2), transcript variant beta-3a, mRNA Length = 3039 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 688 tctgctcctggatgaggcctt 668
>ref|NM_017484.2| Homo sapiens adducin 2 (beta) (ADD2), transcript variant beta-3b, mRNA Length = 2877 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 688 tctgctcctggatgaggcctt 668
>ref|NM_001617.2| Homo sapiens adducin 2 (beta) (ADD2), transcript variant beta-1, mRNA Length = 3957 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 688 tctgctcctggatgaggcctt 668
>gb|AC161530.4| Mus musculus chromosome 18, clone RP24-339M16, complete sequence Length = 168512 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 478 attttctctagccttctcctgagct 502 ||||||||||||||||| ||||||| Sbjct: 138050 attttctctagccttcttctgagct 138074
>ref|XM_974899.1| PREDICTED: Mus musculus RIKEN cDNA 5730405I09 gene, transcript variant 4 (5730405I09Rik), mRNA Length = 7274 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 478 attttctctagccttctcctgagct 502 ||||||||||||||||| ||||||| Sbjct: 1761 attttctctagccttcttctgagct 1785
>ref|XM_974929.1| PREDICTED: Mus musculus RIKEN cDNA 5730405I09 gene, transcript variant 2 (5730405I09Rik), mRNA Length = 7174 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 478 attttctctagccttctcctgagct 502 ||||||||||||||||| ||||||| Sbjct: 1661 attttctctagccttcttctgagct 1685
>gb|BC065525.1| Homo sapiens adducin 2 (beta), mRNA (cDNA clone MGC:74968 IMAGE:6142886), complete cds Length = 3777 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 488 tctgctcctggatgaggcctt 468
>gb|BC051882.1| Homo sapiens adducin 2 (beta), mRNA (cDNA clone IMAGE:6142945), partial cds Length = 2561 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 661 tctgctcctggatgaggcctt 641
>ref|XM_847973.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 1 (LOC610670), mRNA Length = 2814 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861731.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 19 (LOC610670), mRNA Length = 2637 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861718.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 18 (LOC610670), mRNA Length = 2703 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861707.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 17 (LOC610670), mRNA Length = 2649 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861693.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 16 (LOC610670), mRNA Length = 1680 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861681.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 15 (LOC610670), mRNA Length = 2652 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861667.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 14 (LOC610670), mRNA Length = 2772 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861652.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 13 (LOC610670), mRNA Length = 2826 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861639.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 12 (LOC610670), mRNA Length = 2649 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861625.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 11 (LOC610670), mRNA Length = 2727 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861611.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 10 (LOC610670), mRNA Length = 2664 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861599.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 9 (LOC610670), mRNA Length = 2817 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861583.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 8 (LOC610670), mRNA Length = 2898 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861570.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 7 (LOC610670), mRNA Length = 2796 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861560.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 6 (LOC610670), mRNA Length = 2070 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861548.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 5 (LOC610670), mRNA Length = 1896 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>ref|XM_861513.1| PREDICTED: Canis familiaris similar to Beta adducin (Erythrocyte adducin beta subunit), transcript variant 2 (LOC610670), mRNA Length = 2838 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 223 tctgctcctggatgaggcctt 203
>gb|AC125211.4| Mus musculus BAC clone RP23-128E9 from chromosome 6, complete sequence Length = 193979 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 tctggcatttggattctctgt 469 ||||||||||||||||||||| Sbjct: 112163 tctggcatttggattctctgt 112183
>gb|BC011416.1| Homo sapiens adducin 2 (beta), mRNA (cDNA clone IMAGE:3875231), with apparent retained intron Length = 2226 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 324 tctgctcctggatgaggcctt 304
>gb|BC035524.1| Mus musculus RIKEN cDNA 5730405I09 gene, mRNA (cDNA clone MGC:40707 IMAGE:4974858), complete cds Length = 2525 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 478 attttctctagccttctcctgagct 502 ||||||||||||||||| ||||||| Sbjct: 1882 attttctctagccttcttctgagct 1906
>gb|BC056881.1| Homo sapiens adducin 2 (beta), mRNA (cDNA clone IMAGE:6139987), partial cds Length = 2417 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 517 tctgctcctggatgaggcctt 497
>gb|BC027876.1| Homo sapiens cDNA clone IMAGE:5207443, containing frame-shift errors Length = 3778 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 672 tctgctcctggatgaggcctt 652
>gb|AF486423.1| Homo sapiens beta adducin 2 transcript variant beta-4d (ADD2) mRNA, partial cds; alternatively spliced Length = 331 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 260 tctgctcctggatgaggcctt 240
>gb|AF486422.1| Homo sapiens beta adducin 2 transcript variant beta-4c (ADD2) mRNA, partial cds; alternatively spliced Length = 880 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 260 tctgctcctggatgaggcctt 240
>gb|AF486421.1| Homo sapiens beta adducin 2 transcript variant beta-4b (ADD2) mRNA, partial cds; alternatively spliced Length = 876 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 260 tctgctcctggatgaggcctt 240
>gb|AF486420.1| Homo sapiens beta adducin 2 transcript variant beta-4a (ADD2) mRNA, partial cds; alternatively spliced Length = 1829 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 291 tctgctcctggatgaggcctt 271
>emb|CR860745.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0727 (from clone DKFZp459M0727) Length = 4511 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 273 tctgctcctggatgaggcctt 253
>emb|CR590670.1| full-length cDNA clone CS0DM006YC12 of Fetal liver of Homo sapiens (human) Length = 2414 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 427 tctgctcctggatgaggcctt 407
>gb|BC010237.1|BC010237 Homo sapiens, adducin 2 (beta), clone IMAGE:4153471, mRNA Length = 2572 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 668 tctgctcctggatgaggcctt 648
>dbj|AK028696.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732438K01 product:CYCLIN-BOX CARRYING PROTEIN homolog [Homo sapiens], full insert sequence Length = 4018 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 478 attttctctagccttctcctgagct 502 ||||||||||||||||| ||||||| Sbjct: 2128 attttctctagccttcttctgagct 2152
>gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2, complete sequence Length = 158458 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 10852 tctgctcctggatgaggcctt 10872
>gb|BC041666.1| Homo sapiens adducin 2 (beta), transcript variant beta-4, mRNA (cDNA clone MGC:47622 IMAGE:5491324), complete cds Length = 2654 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 668 tctgctcctggatgaggcctt 648
>dbj|AK115362.1| Ciona intestinalis cDNA, clone:cieg047i10, full insert sequence Length = 1605 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ccaacattacaaccaactatt 70 ||||||||||||||||||||| Sbjct: 605 ccaacattacaaccaactatt 625
>ref|NM_026484.2| Mus musculus RIKEN cDNA 5730405I09 gene (5730405I09Rik), mRNA Length = 4018 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 478 attttctctagccttctcctgagct 502 ||||||||||||||||| ||||||| Sbjct: 2128 attttctctagccttcttctgagct 2152
>dbj|AB209227.1| Homo sapiens mRNA for adducin 2 isoform b variant protein Length = 3776 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 703 tctgctcctggatgaggcctt 683
>emb|X58199.1|HSBADD Human mRNA for beta adducin Length = 2597 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tctgctcctggatgaggcctt 443 ||||||||||||||||||||| Sbjct: 545 tctgctcctggatgaggcctt 525
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 gctcgatggcggcggtcaacctcg 281 ||||||||||||||||| |||||| Sbjct: 1975012 gctcgatggcggcggtcgacctcg 1974989
>ref|XM_595552.2| PREDICTED: Bos taurus similar to G protein-regulated inducer of neurite outgrowth 1 (LOC517383), mRNA Length = 3141 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 3090 ctgcagcagtgcgcggaagaggcccggc 3063
>ref|NM_012014.2| Mus musculus G protein-regulated inducer of neurite outgrowth 1 (Gprin1), mRNA Length = 4143 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 3103 ctgcagcagcgcgcggaagaggcccggc 3076
>gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosome 7, complete sequence Length = 155682 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 442 ttgcaactctggcatttggattct 465 |||||||||||| ||||||||||| Sbjct: 101879 ttgcaactctgggatttggattct 101902
>ref|XM_001000610.1| PREDICTED: Mus musculus G protein-regulated inducer of neurite outgrowth 1 (Gprin1), mRNA Length = 2890 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 2839 ctgcagcagcgcgcggaagaggcccggc 2812
>gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome 7, complete sequence Length = 160293 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 ttgcaactctggcatttggattct 465 |||||||||||| ||||||||||| Sbjct: 109929 ttgcaactctgggatttggattct 109906
>gb|AC115300.4| Mus musculus BAC clone RP24-74P1 from chromosome 10, complete sequence Length = 199750 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 atctctgccatatacagtac 120 |||||||||||||||||||| Sbjct: 69982 atctctgccatatacagtac 70001
>gb|BC057044.1| Mus musculus G protein-regulated inducer of neurite outgrowth 1, mRNA (cDNA clone MGC:67281 IMAGE:6825304), complete cds Length = 4049 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 2989 ctgcagcagcgcgcggaagaggcccggc 2962
>gb|AC100847.2| Homo sapiens chromosome 18, clone RP11-706P11, complete sequence Length = 186784 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 ttgctaaaggattgccacca 565 |||||||||||||||||||| Sbjct: 144619 ttgctaaaggattgccacca 144638
>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part of the gene for C-terminal PDZ domain ligand of neuronal nitric oxide synthase (CAPON), complete sequence Length = 208408 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ccctgctacttcactgcagc 196 |||||||||||||||||||| Sbjct: 90218 ccctgctacttcactgcagc 90199
>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence Length = 170969 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 ttgctaaaggattgccacca 565 |||||||||||||||||||| Sbjct: 25981 ttgctaaaggattgccacca 26000
>dbj|AK138306.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230062C06 product:G protein-regulated inducer of neurite outgrowth 1, full insert sequence Length = 4143 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 3103 ctgcagcagcgcgcggaagaggcccggc 3076
>dbj|AK144210.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:G430115C11 product:G protein-regulated inducer of neurite outgrowth 1, full insert sequence Length = 4051 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 3012 ctgcagcagcgcgcggaagaggcccggc 2985
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Plus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 5047193 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 5047243
>gb|AC175538.1| Mus musculus BAC clone RP24-476A4 from chromosome 13, complete sequence Length = 191199 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 atatattttctctagccttc 493 |||||||||||||||||||| Sbjct: 123817 atatattttctctagccttc 123798
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1147_D11 Length = 138444 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Plus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 6231 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 6281
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gctcgatggcggcggtcaac 277 |||||||||||||||||||| Sbjct: 33203 gctcgatggcggcggtcaac 33184
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Plus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 89307 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 89357
>dbj|AK099729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089L07, full insert sequence Length = 2519 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Minus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 2277 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 2227
>dbj|AK099940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120N16, full insert sequence Length = 2140 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Minus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 1896 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 1846
>dbj|AK099512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I07, full insert sequence Length = 3180 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Minus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 2937 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 2887
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 actgctcgatggcggcggtc 274 |||||||||||||||||||| Sbjct: 1794886 actgctcgatggcggcggtc 1794905
>dbj|AK066664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072I01, full insert sequence Length = 2402 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Minus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 2158 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 2108
>dbj|AK065642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H08, full insert sequence Length = 2769 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Minus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 2526 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 2476
>dbj|AK059995.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F01, full insert sequence Length = 1094 Score = 40.1 bits (20), Expect = 8.7 Identities = 43/51 (84%) Strand = Plus / Minus Query: 218 tgtgcctgcgtgtactgaaggccgngctccaggagatactgctcgatggcg 268 |||||||||||||| || ||||| |||||| ||| ||||||||| |||| Sbjct: 850 tgtgcctgcgtgtagtggaggccttcctccagaagaaactgctcgacggcg 800
>gb|AF146569.1|AF146569 Mus musculus GRIN1 (Z16) mRNA, complete cds Length = 3568 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 2517 ctgcagcagcgcgcggaagaggcccggc 2490
>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence Length = 170850 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ttgttgagttcattgttcag 372 |||||||||||||||||||| Sbjct: 44360 ttgttgagttcattgttcag 44341
>gb|AC149056.6| Mus musculus BAC clone RP23-344G11 from chromosome 7, complete sequence Length = 199549 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 442 ttgcaactctggcatttggattct 465 |||||||||||| ||||||||||| Sbjct: 173691 ttgcaactctgggatttggattct 173714
>emb|AL731548.13| Mouse DNA sequence from clone RP23-71M18 on chromosome X, complete sequence Length = 218612 Score = 40.1 bits (20), Expect = 8.7 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 475 tatattttctctagccttctcctgagctaatc 506 |||| ||||||||||||| ||||||||||||| Sbjct: 112236 tataatttctctagcctt-tcctgagctaatc 112266
>gb|AY945226.1|AY945226S1 Bos taurus mitochondrial glycerol phosphate acyltransferase (GPAM) gene, exons 1 through 6; nuclear gene for mitochondrial product Length = 12030 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 tctattctgctactcatctctgcc 109 |||||| ||||||||||||||||| Sbjct: 4721 tctattatgctactcatctctgcc 4698
>gb|AC162526.3| Mus musculus BAC clone RP23-50I19 from chromosome 13, complete sequence Length = 219418 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 190 ctgcagcaggacgcggaagaggcccggc 217 ||||||||| ||||||||||||||||| Sbjct: 160430 ctgcagcagcgcgcggaagaggcccggc 160457 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,659,481 Number of Sequences: 3902068 Number of extensions: 4659481 Number of successful extensions: 79275 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 78979 Number of HSP's gapped (non-prelim): 291 length of query: 636 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 613 effective length of database: 17,143,297,704 effective search space: 10508841492552 effective search space used: 10508841492552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)