>RHG08_MOUSE (Q9CXP4) Rho-GTPase-activating protein 8|
          Length = 425

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 168 QPSLGFIQTTV-EIRKSRNKNVYPLFICHSTIVXVXAWKIFR 290
           +PSLG++Q T  E  +   KN+  L++ H T +    W IF+
Sbjct: 84  KPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALWNIFK 125

>ALG1_DEBHA (Q6BS98) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC|
           2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose
           mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol
           mannosyltransferase) (Beta-1,4-mannosyltransferase)
           (Asparagine-linked gl
          Length = 472

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 304 LFLAHLKIFQAXTXTIVEWHMNSGYTFLFRDFR 206
           + LA++K+F   T  I++WH N  YT L   F+
Sbjct: 162 IVLAYIKVFSRKTKLIIDWH-NLNYTILNLKFQ 193

>BOS1_SCHPO (Q9P7G5) Vesicular transport protein bos1|
          Length = 235

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 174 SLGFIQTTVEIRKSRNKNVYPLFICHSTIVXVXAWKIFRWAR 299
           +LG  + T+ +   R+K    +F C + +V V  + I+RW R
Sbjct: 194 TLGITRHTLSLINRRSKQDKIIFYCGAFLVFVLFYLIYRWLR 235

>GLYA_AQUAE (O66776) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 428

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 102 ISYTQRLNNTRFRSLKILV*TRQPSLGFIQTTVEIRKSRNKNVYP 236
           + Y Q + +T  ++L      R P  GFI TT E  K+ +K+V+P
Sbjct: 214 VPYAQFVTSTTHKTL------RGPRSGFILTTKEYAKAVDKSVFP 252

>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic|
           region
          Length = 659

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
 Frame = +2

Query: 143 LKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPL--------YYCXCXRLEDLQVGE 298
           L N+ LN    PR  S +C N K ++Q+    I            Y     +L+D +V E
Sbjct: 9   LNNISLNSKQNPRSISKSCPNDKDARQKSFKTISAQALVRVQGAGYKLGDVKLKDAEVKE 68

Query: 299 EES 307
           + S
Sbjct: 69  KNS 71

>YR500_MIMIV (Q5UP46) Hypothetical protein R500|
          Length = 185

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +2

Query: 17  SLYPIKXGFYLLQLVLVIHFLSCMVEVHYIIHSAIKQYSISKLKNLGLNKATQ 175
           +++P    FYL    ++   ++C+  V+Y+ H   +  +++ L  LG+ + TQ
Sbjct: 20  TIFPHAYKFYLTMWKIIFSLINCIKIVYYVDHQG-EIMNVTHLYYLGIMRKTQ 71

>NRF6_CAEEL (Q09225) Nose resistant to fluoxetine protein 6 precursor (Protein|
           nrf-6)
          Length = 822

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +2

Query: 5   YCLXSLYPIKXGFYLLQLVLVIHFLSCMVEVHYIIHSAIKQYSISKLKNLGLNK 166
           +C   L+PI    Y L      HF + +  + Y + +    Y+I+   +L   K
Sbjct: 733 FCAYLLHPIMLQIYNLSRPQPFHFTTFIQMIRYTVEAVFASYTIAFFFSLAFEK 786

>CXA6_RAT (P28233) Gap junction alpha-6 protein (Connexin-33) (Cx33)|
          Length = 286

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +2

Query: 8   CLXSLYPIKXGFYLLQLVL-VIHFLSCMVEVHYIIHSAIKQYSISKLKNLGLN--KATQP 178
           C  S    K  F L  LV+ ++ F+  ++E+ Y++  AIK +  ++ + +  N  +  +P
Sbjct: 199 CFLSRPTEKTIFILFMLVVSMVSFVLNVIELFYVLFKAIKNHLGNEKEEVYCNPVELQKP 258

Query: 179 RLYSNNCRNTKISKQERISAIHMPLYY 259
              S++   T I   +++  + +  +Y
Sbjct: 259 SCVSSSAVLTTICSSDQVVPVGLSSFY 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,308,306
Number of Sequences: 219361
Number of extensions: 637047
Number of successful extensions: 1322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)