| Clone Name | rbags23n08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467124.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1826 Score = 242 bits (122), Expect = 1e-60 Identities = 299/358 (83%) Strand = Plus / Minus Query: 264 tcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcctcttctatg 323 |||||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||| Sbjct: 1440 tcttcatcatatgcttcctgccgcctgtgctgctgcctgcgcctcatctcctcttctatg 1381 Query: 324 ttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgacgactggctc 383 || || || |||||||| ||||| ||||| ||||| | |||||||| ||| | || || Sbjct: 1380 ttgacatcatgcatggtggtctcctcacattgatctagctccatgtctgacaattgattc 1321 Query: 384 cctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtcagtactcca 443 | |||| ||| |||| ||||||||||| || |||||||| ||| || ||| | ||| Sbjct: 1320 ctgggtcgtggtggcaaaatcttctcaagcgatcggcattggccaggagtgagtgcacca 1261 Query: 444 ggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaaggccggcca 503 |||||||| ||||||||| |||| || || || || ||||| ||||||||||| |||||| Sbjct: 1260 ggctcaggaaactccacgttgaattcaacaaaaagacgacctttcatgaaagggcggcca 1201 Query: 504 tgccgaggcatgccctcgtcatttatggccttgtgctgaccaggctttatgatctcccca 563 ||| | |||||||| || ||||| ||||||||||| |||||||| ||||| | |||||| Sbjct: 1200 tgctggggcatgccttcatcattgatggccttgtgttgaccaggttttataacctcccct 1141 Query: 564 ggattggatttgatcagaagctgtcgaccatcaagatgggtcagaacaaactggaagc 621 ||||| |||||||| || || || ||||||||||||||||| |||||||||||||||| Sbjct: 1140 ggattagatttgattaggagttgccgaccatcaagatgggttagaacaaactggaagc 1083
>dbj|AK066420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067J21, full insert sequence Length = 1824 Score = 242 bits (122), Expect = 1e-60 Identities = 299/358 (83%) Strand = Plus / Minus Query: 264 tcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcctcttctatg 323 |||||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||| Sbjct: 1438 tcttcatcatatgcttcctgccgcctgtgctgctgcctgcgcctcatctcctcttctatg 1379 Query: 324 ttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgacgactggctc 383 || || || |||||||| ||||| ||||| ||||| | |||||||| ||| | || || Sbjct: 1378 ttgacatcatgcatggtggtctcctcacattgatctagctccatgtctgacaattgattc 1319 Query: 384 cctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtcagtactcca 443 | |||| ||| |||| ||||||||||| || |||||||| ||| || ||| | ||| Sbjct: 1318 ctgggtcgtggtggcaaaatcttctcaagcgatcggcattggccaggagtgagtgcacca 1259 Query: 444 ggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaaggccggcca 503 |||||||| ||||||||| |||| || || || || ||||| ||||||||||| |||||| Sbjct: 1258 ggctcaggaaactccacgttgaattcaacaaaaagacgacctttcatgaaagggcggcca 1199 Query: 504 tgccgaggcatgccctcgtcatttatggccttgtgctgaccaggctttatgatctcccca 563 ||| | |||||||| || ||||| ||||||||||| |||||||| ||||| | |||||| Sbjct: 1198 tgctggggcatgccttcatcattgatggccttgtgttgaccaggttttataacctcccct 1139 Query: 564 ggattggatttgatcagaagctgtcgaccatcaagatgggtcagaacaaactggaagc 621 ||||| |||||||| || || || ||||||||||||||||| |||||||||||||||| Sbjct: 1138 ggattagatttgattaggagttgccgaccatcaagatgggttagaacaaactggaagc 1081
>dbj|AK062239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E06, full insert sequence Length = 1356 Score = 242 bits (122), Expect = 1e-60 Identities = 299/358 (83%) Strand = Plus / Minus Query: 264 tcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcctcttctatg 323 |||||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||| Sbjct: 1020 tcttcatcatatgcttcctgccgcctgtgctgctgcctgcgcctcatctcctcttctatg 961 Query: 324 ttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgacgactggctc 383 || || || |||||||| ||||| ||||| ||||| | |||||||| ||| | || || Sbjct: 960 ttgacatcatgcatggtggtctcctcacattgatctagctccatgtctgacaattgattc 901 Query: 384 cctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtcagtactcca 443 | |||| ||| |||| ||||||||||| || |||||||| ||| || ||| | ||| Sbjct: 900 ctgggtcgtggtggcaaaatcttctcaagcgatcggcattggccaggagtgagtgcacca 841 Query: 444 ggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaaggccggcca 503 |||||||| ||||||||| |||| || || || || ||||| ||||||||||| |||||| Sbjct: 840 ggctcaggaaactccacgttgaattcaacaaaaagacgacctttcatgaaagggcggcca 781 Query: 504 tgccgaggcatgccctcgtcatttatggccttgtgctgaccaggctttatgatctcccca 563 ||| | |||||||| || ||||| ||||||||||| |||||||| ||||| | |||||| Sbjct: 780 tgctggggcatgccttcatcattgatggccttgtgttgaccaggttttataacctcccct 721 Query: 564 ggattggatttgatcagaagctgtcgaccatcaagatgggtcagaacaaactggaagc 621 ||||| |||||||| || || || ||||||||||||||||| |||||||||||||||| Sbjct: 720 ggattagatttgattaggagttgccgaccatcaagatgggttagaacaaactggaagc 663
>gb|AY108160.1| Zea mays PCO119794 mRNA sequence Length = 1849 Score = 172 bits (87), Expect = 9e-40 Identities = 297/367 (80%) Strand = Plus / Minus Query: 255 tcctcatcttcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcc 314 ||||| || ||||||||||| ||||| ||| | | || ||||||||||| ||||||||| Sbjct: 1381 tcctcctcgtcttcatcgtaggcttcctgcttcttctgctgctgcctgcgcctcatctcc 1322 Query: 315 tcttctatgttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgac 374 ||||| ||||| || ||||| | ||| ||||| || ||||| |||| |||||||||||| Sbjct: 1321 tcttcaatgttgacatcgtgaagggtggtctcctcgcactggtccagctccatgtccgac 1262 Query: 375 gactggctccctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtc 434 |||||||||||| | ||||| ||||||||||| | || ||| ||| ||||| Sbjct: 1261 agttggctccctggtttcggcggaaggatcttctccaacgatcggcactgggcaggggag 1202 Query: 435 agtactccaggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaa 494 || | |||||||| || ||| ||||| |||| || || ||||| || |||||||||||| Sbjct: 1201 agcgcaccaggctcgggaaacaccacgttgaattcaacaaacagacggcccttcatgaaa 1142 Query: 495 ggccggccatgccgaggcatgccctcgtcatttatggccttgtgctgaccaggctttatg 554 || ||||||||| ||||||| || || || || ||||||||||| ||||| || || || Sbjct: 1141 ggacggccatgctgaggcataccttcatcgttaatggccttgtgttgacctggtttaata 1082 Query: 555 atctccccaggattggatttgatcagaagctgtcgaccatcaagatgggtcagaacaaac 614 | |||||| || | |||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 1081 acctccccggggtcagatttgatcagaagctgtcgcccatcaagatgagtaagaacaaac 1022 Query: 615 tggaagc 621 ||||||| Sbjct: 1021 tggaagc 1015
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 168 bits (85), Expect = 1e-38 Identities = 232/281 (82%) Strand = Plus / Minus Query: 264 tcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcctcttctatg 323 |||||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||| Sbjct: 26541462 tcttcatcatatgcttcctgccgcctgtgctgctgcctgcgcctcatctcctcttctatg 26541403 Query: 324 ttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgacgactggctc 383 || || || |||||||| ||||| ||||| ||||| | |||||||| ||| | || || Sbjct: 26541402 ttgacatcatgcatggtggtctcctcacattgatctagctccatgtctgacaattgattc 26541343 Query: 384 cctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtcagtactcca 443 | |||| ||| |||| ||||||||||| || |||||||| ||| || ||| | ||| Sbjct: 26541342 ctgggtcgtggtggcaaaatcttctcaagcgatcggcattggccaggagtgagtgcacca 26541283 Query: 444 ggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaaggccggcca 503 |||||||| ||||||||| |||| || || || || ||||| ||||||||||| |||||| Sbjct: 26541282 ggctcaggaaactccacgttgaattcaacaaaaagacgacctttcatgaaagggcggcca 26541223 Query: 504 tgccgaggcatgccctcgtcatttatggccttgtgctgacc 544 ||| | |||||||| || ||||| ||||||||||| ||||| Sbjct: 26541222 tgctggggcatgccttcatcattgatggccttgtgttgacc 26541182 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 542 accaggctttatgatctccccaggattggatttgatcagaagctgtcgaccatcaagatg 601 |||||| ||||| | |||||| ||||| |||||||| || || || |||||||||||||| Sbjct: 26541094 accaggttttataacctcccctggattagatttgattaggagttgccgaccatcaagatg 26541035 Query: 602 ggtcagaacaaactggaagc 621 ||| |||||||||||||||| Sbjct: 26541034 ggttagaacaaactggaagc 26541015
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 168 bits (85), Expect = 1e-38 Identities = 232/281 (82%) Strand = Plus / Minus Query: 264 tcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcctcttctatg 323 |||||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||| Sbjct: 83843 tcttcatcatatgcttcctgccgcctgtgctgctgcctgcgcctcatctcctcttctatg 83784 Query: 324 ttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgacgactggctc 383 || || || |||||||| ||||| ||||| ||||| | |||||||| ||| | || || Sbjct: 83783 ttgacatcatgcatggtggtctcctcacattgatctagctccatgtctgacaattgattc 83724 Query: 384 cctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtcagtactcca 443 | |||| ||| |||| ||||||||||| || |||||||| ||| || ||| | ||| Sbjct: 83723 ctgggtcgtggtggcaaaatcttctcaagcgatcggcattggccaggagtgagtgcacca 83664 Query: 444 ggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaaggccggcca 503 |||||||| ||||||||| |||| || || || || ||||| ||||||||||| |||||| Sbjct: 83663 ggctcaggaaactccacgttgaattcaacaaaaagacgacctttcatgaaagggcggcca 83604 Query: 504 tgccgaggcatgccctcgtcatttatggccttgtgctgacc 544 ||| | |||||||| || ||||| ||||||||||| ||||| Sbjct: 83603 tgctggggcatgccttcatcattgatggccttgtgttgacc 83563 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 542 accaggctttatgatctccccaggattggatttgatcagaagctgtcgaccatcaagatg 601 |||||| ||||| | |||||| ||||| |||||||| || || || |||||||||||||| Sbjct: 83475 accaggttttataacctcccctggattagatttgattaggagttgccgaccatcaagatg 83416 Query: 602 ggtcagaacaaactggaagc 621 ||| |||||||||||||||| Sbjct: 83415 ggttagaacaaactggaagc 83396
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 168 bits (85), Expect = 1e-38 Identities = 232/281 (82%) Strand = Plus / Minus Query: 264 tcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcctcttctatg 323 |||||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||| Sbjct: 247059 tcttcatcatatgcttcctgccgcctgtgctgctgcctgcgcctcatctcctcttctatg 247000 Query: 324 ttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgacgactggctc 383 || || || |||||||| ||||| ||||| ||||| | |||||||| ||| | || || Sbjct: 246999 ttgacatcatgcatggtggtctcctcacattgatctagctccatgtctgacaattgattc 246940 Query: 384 cctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtcagtactcca 443 | |||| ||| |||| ||||||||||| || |||||||| ||| || ||| | ||| Sbjct: 246939 ctgggtcgtggtggcaaaatcttctcaagcgatcggcattggccaggagtgagtgcacca 246880 Query: 444 ggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaaggccggcca 503 |||||||| ||||||||| |||| || || || || ||||| ||||||||||| |||||| Sbjct: 246879 ggctcaggaaactccacgttgaattcaacaaaaagacgacctttcatgaaagggcggcca 246820 Query: 504 tgccgaggcatgccctcgtcatttatggccttgtgctgacc 544 ||| | |||||||| || ||||| ||||||||||| ||||| Sbjct: 246819 tgctggggcatgccttcatcattgatggccttgtgttgacc 246779 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 542 accaggctttatgatctccccaggattggatttgatcagaagctgtcgaccatcaagatg 601 |||||| ||||| | |||||| ||||| |||||||| || || || |||||||||||||| Sbjct: 246691 accaggttttataacctcccctggattagatttgattaggagttgccgaccatcaagatg 246632 Query: 602 ggtcagaacaaactggaagc 621 ||| |||||||||||||||| Sbjct: 246631 ggttagaacaaactggaagc 246612
>ref|XM_473410.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2115 Score = 139 bits (70), Expect = 1e-29 Identities = 253/314 (80%) Strand = Plus / Minus Query: 255 tcctcatcttcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcc 314 ||||| || ||||| ||||| ||||| ||| |||||||| |||| |||| ||||||||| Sbjct: 2081 tcctcctcatcttcgtcgtacgcttcctgcttcctttgatactgcttgcgcctcatctcc 2022 Query: 315 tcttctatgttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgac 374 |||||||||||||| || |||||||| || || ||||| ||||||| |||||| || || Sbjct: 2021 tcttctatgttcacatcatgcatggtagtttcctcacattgatccaggtccatatctgat 1962 Query: 375 gactggctccctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtc 434 | ||| ||| ||| | || || |||||| ||||||||| | ||||||| | ||| Sbjct: 1961 aattggtgcccaggtttaggtggtaggatcatctcaagtgcccggcattggtcacgggag 1902 Query: 435 agtactccaggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaa 494 ||||| |||| ||||||||||| || |||| || || || || || |||||||||||| Sbjct: 1901 agtacaccagattcagggaactcaacattgaattccacaaagagacggcccttcatgaaa 1842 Query: 495 ggccggccatgccgaggcatgccctcgtcatttatggccttgtgctgaccaggctttatg 554 ||||||||||| | ||||| ||||| ||||||||||||||||| |||||||| || || Sbjct: 1841 ggccggccatggtgtggcattccctcatcatttatggccttgtgttgaccaggtttaata 1782 Query: 555 atctccccaggatt 568 || || |||||||| Sbjct: 1781 atttcgccaggatt 1768
>dbj|AK061922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B10, full insert sequence Length = 1401 Score = 139 bits (70), Expect = 1e-29 Identities = 253/314 (80%) Strand = Plus / Minus Query: 255 tcctcatcttcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcc 314 ||||| || ||||| ||||| ||||| ||| |||||||| |||| |||| ||||||||| Sbjct: 1157 tcctcctcatcttcgtcgtacgcttcctgcttcctttgatactgcttgcgcctcatctcc 1098 Query: 315 tcttctatgttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgac 374 |||||||||||||| || |||||||| || || ||||| ||||||| |||||| || || Sbjct: 1097 tcttctatgttcacatcatgcatggtagtttcctcacattgatccaggtccatatctgat 1038 Query: 375 gactggctccctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtc 434 | ||| ||| ||| | || || |||||| ||||||||| | ||||||| | ||| Sbjct: 1037 aattggtgcccaggtttaggtggtaggatcatctcaagtgcccggcattggtcacgggag 978 Query: 435 agtactccaggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaa 494 ||||| |||| ||||||||||| || |||| || || || || || |||||||||||| Sbjct: 977 agtacaccagattcagggaactcaacattgaattccacaaagagacggcccttcatgaaa 918 Query: 495 ggccggccatgccgaggcatgccctcgtcatttatggccttgtgctgaccaggctttatg 554 ||||||||||| | ||||| ||||| ||||||||||||||||| |||||||| || || Sbjct: 917 ggccggccatggtgtggcattccctcatcatttatggccttgtgttgaccaggtttaata 858 Query: 555 atctccccaggatt 568 || || |||||||| Sbjct: 857 atttcgccaggatt 844
>dbj|AK101956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075M11, full insert sequence Length = 1631 Score = 139 bits (70), Expect = 1e-29 Identities = 253/314 (80%) Strand = Plus / Minus Query: 255 tcctcatcttcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcc 314 ||||| || ||||| ||||| ||||| ||| |||||||| |||| |||| ||||||||| Sbjct: 1335 tcctcctcatcttcgtcgtacgcttcctgcttcctttgatactgcttgcgcctcatctcc 1276 Query: 315 tcttctatgttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgac 374 |||||||||||||| || |||||||| || || ||||| ||||||| |||||| || || Sbjct: 1275 tcttctatgttcacatcatgcatggtagtttcctcacattgatccaggtccatatctgat 1216 Query: 375 gactggctccctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtc 434 | ||| ||| ||| | || || |||||| ||||||||| | ||||||| | ||| Sbjct: 1215 aattggtgcccaggtttaggtggtaggatcatctcaagtgcccggcattggtcacgggag 1156 Query: 435 agtactccaggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaa 494 ||||| |||| ||||||||||| || |||| || || || || || |||||||||||| Sbjct: 1155 agtacaccagattcagggaactcaacattgaattccacaaagagacggcccttcatgaaa 1096 Query: 495 ggccggccatgccgaggcatgccctcgtcatttatggccttgtgctgaccaggctttatg 554 ||||||||||| | ||||| ||||| ||||||||||||||||| |||||||| || || Sbjct: 1095 ggccggccatggtgtggcattccctcatcatttatggccttgtgttgaccaggtttaata 1036 Query: 555 atctccccaggatt 568 || || |||||||| Sbjct: 1035 atttcgccaggatt 1022
>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence Length = 127259 Score = 131 bits (66), Expect = 3e-27 Identities = 234/290 (80%) Strand = Plus / Minus Query: 255 tcctcatcttcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcc 314 ||||| || ||||| ||||| ||||| ||| |||||||| |||| |||| ||||||||| Sbjct: 6952 tcctcctcatcttcgtcgtacgcttcctgcttcctttgatactgcttgcgcctcatctcc 6893 Query: 315 tcttctatgttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgac 374 |||||||||||||| || |||||||| || || ||||| ||||||| |||||| || || Sbjct: 6892 tcttctatgttcacatcatgcatggtagtttcctcacattgatccaggtccatatctgat 6833 Query: 375 gactggctccctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtc 434 | ||| ||| ||| | || || |||||| ||||||||| | ||||||| | ||| Sbjct: 6832 aattggtgcccaggtttaggtggtaggatcatctcaagtgcccggcattggtcacgggag 6773 Query: 435 agtactccaggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaa 494 ||||| |||| ||||||||||| || |||| || || || || || |||||||||||| Sbjct: 6772 agtacaccagattcagggaactcaacattgaattccacaaagagacggcccttcatgaaa 6713 Query: 495 ggccggccatgccgaggcatgccctcgtcatttatggccttgtgctgacc 544 ||||||||||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct: 6712 ggccggccatggtgtggcattccctcatcatttatggccttgtgttgacc 6663
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 131 bits (66), Expect = 3e-27 Identities = 234/290 (80%) Strand = Plus / Minus Query: 255 tcctcatcttcttcatcgtatgcttcttgccgcctttgatgctgcctgcgtctcatctcc 314 ||||| || ||||| ||||| ||||| ||| |||||||| |||| |||| ||||||||| Sbjct: 27482976 tcctcctcatcttcgtcgtacgcttcctgcttcctttgatactgcttgcgcctcatctcc 27482917 Query: 315 tcttctatgttcacgtcgtgcatggtcgtctcttcacactgatccacgtccatgtccgac 374 |||||||||||||| || |||||||| || || ||||| ||||||| |||||| || || Sbjct: 27482916 tcttctatgttcacatcatgcatggtagtttcctcacattgatccaggtccatatctgat 27482857 Query: 375 gactggctccctggtcttggcggcaggatcttctcaagtgacttgcattggctaggggtc 434 | ||| ||| ||| | || || |||||| ||||||||| | ||||||| | ||| Sbjct: 27482856 aattggtgcccaggtttaggtggtaggatcatctcaagtgcccggcattggtcacgggag 27482797 Query: 435 agtactccaggctcagggaactccacgctgaactcgacgaacaggcgacccttcatgaaa 494 ||||| |||| ||||||||||| || |||| || || || || || |||||||||||| Sbjct: 27482796 agtacaccagattcagggaactcaacattgaattccacaaagagacggcccttcatgaaa 27482737 Query: 495 ggccggccatgccgaggcatgccctcgtcatttatggccttgtgctgacc 544 ||||||||||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct: 27482736 ggccggccatggtgtggcattccctcatcatttatggccttgtgttgacc 27482687
>emb|X69436.1|APDNAJ A.porrum dnaJ mRNA for DNA J protein (partial) Length = 1210 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgtgcatggtcgtctcttcaca 352 ||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 1103 ctcatctcctcttctatgttcacatcatgcatggtcgtttcttcaca 1057
>dbj|AB003138.1| Salix gilgiana premature mRNA for DnaJ homolog protein, complete cds Length = 2555 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 563 aggattggatttgatcagaagctgtcgaccatcaagatgggt 604 |||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1889 aggatttgatttgataagaagctgccgaccatcaagatgggt 1848 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 cttactgctgggcgcactgcaccc 234 ||||||||||||| |||||||||| Sbjct: 2320 cttactgctgggcacactgcaccc 2297
>dbj|AB003137.1| Salix gilgiana mRNA for DnaJ homolog protein, complete cds Length = 1610 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 563 aggattggatttgatcagaagctgtcgaccatcaagatgggt 604 |||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1029 aggatttgatttgataagaagctgccgaccatcaagatgggt 988 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 cttactgctgggcgcactgcaccc 234 ||||||||||||| |||||||||| Sbjct: 1381 cttactgctgggcacactgcaccc 1358
>emb|X77632.1|APLDJ2 A.porrum LDJ2 mRNA Length = 1509 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgtgcatggtcgtctcttcaca 352 ||||||||||| |||||||||||||| ||||| || || |||||||| Sbjct: 1246 ctcatctcctcctctatgttcacgtcatgcatcgtggtttcttcaca 1200
>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21, complete sequence Length = 205143 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttcatc 271 ||||||||||||||||||||||| Sbjct: 80781 ccttcatcctcatcttcttcatc 80759
>ref|XM_679780.1| PREDICTED: Danio rerio hypothetical protein LOC556858 (LOC556858), mRNA Length = 1022 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttcatc 271 ||||||||||||||||||||||| Sbjct: 512 ccttcatcctcatcttcttcatc 490
>ref|XM_678467.1| PREDICTED: Danio rerio hypothetical protein LOC555826 (LOC555826), mRNA Length = 1442 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttcatc 271 ||||||||||||||||||||||| Sbjct: 932 ccttcatcctcatcttcttcatc 910
>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20, complete sequence Length = 159094 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 249 ccttcatcctcatcttcttcatc 271 ||||||||||||||||||||||| Sbjct: 103595 ccttcatcctcatcttcttcatc 103617
>gb|BC082000.1| Rattus norvegicus ganglioside-induced differentiation-associated-protein 2, mRNA (cDNA clone MGC:94234 IMAGE:7131173), complete cds Length = 2553 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 248 gccttcatcctcatcttcttcat 270 ||||||||||||||||||||||| Sbjct: 1035 gccttcatcctcatcttcttcat 1013
>ref|NM_001013201.1| Rattus norvegicus ganglioside-induced differentiation-associated-protein 2 (Gdap2), mRNA Length = 2553 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 248 gccttcatcctcatcttcttcat 270 ||||||||||||||||||||||| Sbjct: 1035 gccttcatcctcatcttcttcat 1013
>ref|XM_633046.1| Dictyostelium discoideum hypothetical protein (DDB0186583), partial mRNA Length = 3645 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 3134 cttcatcctcatcttcttcatc 3155
>ref|XM_641716.1| Dictyostelium discoideum nucleomorphin (DDB0231257), partial mRNA Length = 1023 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 397 cttcatcctcatcttcttcatc 376
>ref|XM_638811.1| Dictyostelium discoideum hypothetical protein (DDB0217474), partial mRNA Length = 6309 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 1015 cttcatcctcatcttcttcatc 994
>ref|XM_636909.1| Dictyostelium discoideum TFIID subunit (DDB0231000), partial mRNA Length = 1353 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 700 cttcatcctcatcttcttcatc 679
>gb|BT017684.1| Zea mays clone EL01N0443H09.c mRNA sequence Length = 1401 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 tactgctgggcgcactgcaccc 234 |||||||||||||||||||||| Sbjct: 1159 tactgctgggcgcactgcaccc 1138 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 308 catctcctcttctatgttcacgtcgt 333 |||||||||||| ||||||||||||| Sbjct: 1070 catctcctcttcgatgttcacgtcgt 1045
>gb|BC003489.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:6313 IMAGE:2811622), complete cds Length = 1397 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 936 cttcatcctcatcttcttcatc 915
>ref|NM_011884.1| Mus musculus RNA guanylyltransferase and 5'-phosphatase (Rngtt), mRNA Length = 4160 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 644 cttcatcctcatcttcttcatc 623
>gb|AF140042.2| Dictyostelium discoideum putative calmodulin-binding protein CaM-BP38 mRNA, complete cds Length = 1557 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 883 cttcatcctcatcttcttcatc 862
>gb|BC066713.1| Danio rerio swelling dependent chloride channel, mRNA (cDNA clone MGC:77102 IMAGE:6960579), complete cds Length = 1250 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 514 cttcatcctcatcttcttcatc 493
>ref|NM_130889.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B (Anp32b), mRNA Length = 1408 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 944 cttcatcctcatcttcttcatc 923
>gb|BT013575.1| Lycopersicon esculentum clone 132318R, mRNA sequence Length = 2545 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 1124 cttcatcctcatcttcttcatc 1103
>ref|XR_003192.1| PREDICTED: Mus musculus similar to acidic nuclear phosphoprotein 32 family, member B (LOC621961), mRNA Length = 1455 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 1009 cttcatcctcatcttcttcatc 988
>gb|AC117662.13| Mus musculus chromosome 16, clone RP23-351D19, complete sequence Length = 293822 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 216008 cttcatcctcatcttcttcatc 215987
>gb|BC031526.1| Mus musculus RNA guanylyltransferase and 5'-phosphatase, mRNA (cDNA clone IMAGE:3596606), **** WARNING: chimeric clone **** Length = 6179 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 731 cttcatcctcatcttcttcatc 710
>ref|NM_131911.2| Rattus norvegicus acidic nuclear phosphoprotein 32 family, member B (Anp32b), mRNA Length = 1392 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 913 cttcatcctcatcttcttcatc 892
>ref|XM_723781.1| Plasmodium yoelii yoelii str. 17XNL epsilon-adaptin (PY01150) partial mRNA Length = 3696 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 2746 cttcatcctcatcttcttcatc 2725
>gb|BC043657.1| Mus musculus RNA guanylyltransferase and 5'-phosphatase, mRNA (cDNA clone MGC:49072 IMAGE:5343539), complete cds Length = 4152 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 716 cttcatcctcatcttcttcatc 695
>ref|XM_661859.1| Cryptosporidium hominis TU502 amiloride binding protein 1 (Chro.30388) partial mRNA Length = 5316 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 3619 cttcatcctcatcttcttcatc 3598
>gb|AC006605.1| Caenorhabditis elegans cosmid C07H6, complete sequence Length = 55169 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 50889 cttcatcctcatcttcttcatc 50868
>gb|AE014836.1| Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence Length = 250743 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 201276 cttcatcctcatcttcttcatc 201255
>gb|BT008914.1| Triticum aestivum clone wpa1c.pk002.f9:fis, full insert mRNA sequence Length = 1493 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 tactgctgggcgcactgcaccc 234 |||||||||||||||||||||| Sbjct: 1348 tactgctgggcgcactgcaccc 1327
>gb|BC005628.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:11590 IMAGE:3963541), complete cds Length = 1408 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 944 cttcatcctcatcttcttcatc 923
>dbj|AK142016.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230004E14 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 3256 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 741 cttcatcctcatcttcttcatc 720
>gb|AC084816.14| Homo sapiens 12p BAC RP11-114G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148122 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 11985 cttcatcctcatcttcttcatc 11964
>dbj|AK136648.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230016N12 product:acidic nuclear phosphoprotein 32 family, member B, full insert sequence Length = 758 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 752 cttcatcctcatcttcttcatc 731
>dbj|AK151463.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830030H05 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 2454 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 765 cttcatcctcatcttcttcatc 744
>dbj|AK150497.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830008K03 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 2445 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 751 cttcatcctcatcttcttcatc 730
>dbj|AK165807.1| Mus musculus adult male jejunal and colic lymph node cDNA, RIKEN full-length enriched library, clone:G630089G23 product:acidic nuclear phosphoprotein 32 family, member B, full insert sequence Length = 1436 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 988 cttcatcctcatcttcttcatc 967
>dbj|AK160007.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420043N11 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 2442 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 753 cttcatcctcatcttcttcatc 732
>dbj|AK160706.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched library, clone:3010053J15 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 1584 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 731 cttcatcctcatcttcttcatc 710
>dbj|AK169305.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I920180J03 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 2401 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 717 cttcatcctcatcttcttcatc 696
>ref|XM_626894.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_3430), partial mRNA Length = 5310 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 3613 cttcatcctcatcttcttcatc 3592
>dbj|AK002922.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610042O20 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 2380 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 747 cttcatcctcatcttcttcatc 726
>dbj|AK079488.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130035B01 product:RNA guanylyltransferase and 5'-phosphatase, full insert sequence Length = 1192 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 741 cttcatcctcatcttcttcatc 720
>ref|NM_001025993.1| Caenorhabditis elegans abnormal cell LINeage family member (lin-39) (lin-39) mRNA, complete cds Length = 1253 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 114 cttcatcctcatcttcttcatc 135
>gb|AC016759.11| Homo sapiens BAC clone RP11-535J8 from 2, complete sequence Length = 219574 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 cctgcgtctcatctcctcttct 320 |||||||||||||||||||||| Sbjct: 210419 cctgcgtctcatctcctcttct 210440
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 260361 cttcatcctcatcttcttcatc 260382
>gb|BC093506.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:103080 IMAGE:4917194), complete cds Length = 1297 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 950 cttcatcctcatcttcttcatc 929
>gb|AF034568.1|AF034568 Mus musculus RNA guanylyltransferase (Mce1) mRNA, complete cds Length = 2119 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 698 cttcatcctcatcttcttcatc 677
>emb|Y08484.1|DRICLNPRT D.rerio swelling dependent chloride channel, ICln Length = 1261 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 532 cttcatcctcatcttcttcatc 511
>gb|AY631855.1| Dictyostelium discoideum nucleomorphin B (numB) mRNA, complete cds Length = 2318 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 1645 cttcatcctcatcttcttcatc 1624
>gb|AC133209.4| Mus musculus BAC clone RP23-21E5 from chromosome 3, complete sequence Length = 164837 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 gccttcatcctcatcttcttca 269 |||||||||||||||||||||| Sbjct: 75397 gccttcatcctcatcttcttca 75376
>gb|AY103727.1| Zea mays PCO082317 mRNA sequence Length = 1504 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 tactgctgggcgcactgcaccc 234 |||||||||||||||||||||| Sbjct: 1318 tactgctgggcgcactgcaccc 1297
>gb|BC086508.1| Rattus norvegicus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:91514 IMAGE:7103152), complete cds Length = 1392 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 913 cttcatcctcatcttcttcatc 892
>emb|AL683884.26| Mouse DNA sequence from clone RP23-117B19 on chromosome 4, complete sequence Length = 227816 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 82649 cttcatcctcatcttcttcatc 82628
>gb|L19639.1|CELLIN39A Caenorhabditis elegans homeobox protein (lin-39) mRNA, complete cds Length = 1253 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 114 cttcatcctcatcttcttcatc 135
>gb|AF025653.1|AF025653 Mus musculus mRNA capping enzyme (MCE) mRNA, complete cds Length = 4160 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 644 cttcatcctcatcttcttcatc 623
>emb|AL772272.14| Mouse DNA sequence from clone RP23-369I8 on chromosome 4, complete sequence Length = 129858 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 83736 cttcatcctcatcttcttcatc 83715
>gb|L19248.1|CELHOMDOMB Caenorhabditis elegans homeodomain protein (lin-39) mRNA, complete cds Length = 1312 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 176 cttcatcctcatcttcttcatc 197
>emb|AL611930.24| Mouse DNA sequence from clone RP23-58H5 on chromosome 4, complete sequence Length = 194250 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 8137 cttcatcctcatcttcttcatc 8116
>dbj|AB025582.1| Mus musculus mRNA for proliferation related acidic leucine rich protein PAL31, complete cds Length = 1127 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 739 cttcatcctcatcttcttcatc 718
>dbj|AB025581.1| Rattus norvegicus mRNA for proliferation related acidic leucine rich protein PAL31, complete cds Length = 1225 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatc 271 |||||||||||||||||||||| Sbjct: 750 cttcatcctcatcttcttcatc 729
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence Length = 166888 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 ttcatcctcatcttcttcatc 271 ||||||||||||||||||||| Sbjct: 114047 ttcatcctcatcttcttcatc 114067
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 ttcatcctcatcttcttcatc 271 ||||||||||||||||||||| Sbjct: 33551033 ttcatcctcatcttcttcatc 33551013 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgt 333 ||||||||||| || ||||||||||||| Sbjct: 32407100 ctcatctcctcctcgatgttcacgtcgt 32407073
>ref|XR_004469.1| PREDICTED: Mus musculus similar to SET protein (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A) (Template-activating factor I) (TAF-I) (Liver regeneration-related protein LRRGR00002) (LOC672882), mRNA Length = 1135 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttca 269 ||||||||||||||||||||| Sbjct: 903 ccttcatcctcatcttcttca 883
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 attaaacgggaaaggagcaatagta 183 ||||||| ||||||||||||||||| Sbjct: 1158506 attaaacaggaaaggagcaatagta 1158530
>gb|AC027607.7| Homo sapiens BAC clone RP11-36B15 from 4, complete sequence Length = 161070 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 563 aggattggatttgatcagaag 583 ||||||||||||||||||||| Sbjct: 114761 aggattggatttgatcagaag 114741
>gb|AC105316.5| Homo sapiens BAC clone RP11-524B5 from 4, complete sequence Length = 148571 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 aatgatacttatggctaacaa 95 ||||||||||||||||||||| Sbjct: 116575 aatgatacttatggctaacaa 116555
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 ttcatcctcatcttcttcatc 271 ||||||||||||||||||||| Sbjct: 33641505 ttcatcctcatcttcttcatc 33641485 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgt 333 ||||||||||| || ||||||||||||| Sbjct: 32497610 ctcatctcctcctcgatgttcacgtcgt 32497583
>gb|AC097467.1| Homo sapiens BAC clone RP11-27G13 from 4, complete sequence Length = 178204 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcat 270 ||||||||||||||||||||| Sbjct: 19860 cttcatcctcatcttcttcat 19880
>gb|AC144914.18| Mus musculus chromosome 5, clone RP24-210D14, complete sequence Length = 159643 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 ctccaggctcagggaactcca 459 ||||||||||||||||||||| Sbjct: 77857 ctccaggctcagggaactcca 77837
>emb|AL772308.4| Mouse DNA sequence from clone RP23-451I21 on chromosome 15, complete sequence Length = 148496 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttca 269 ||||||||||||||||||||| Sbjct: 7275 ccttcatcctcatcttcttca 7255
>ref|NM_100565.2| Arabidopsis thaliana metalloendopeptidase AT1G06900 mRNA, complete cds Length = 3409 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 382 tcatcctcatcttcttcatc 363
>ref|NM_127020.1| Arabidopsis thaliana unknown protein AT2G14570 mRNA, complete cds Length = 1308 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 418 cttcatcctcatcttcttca 399
>ref|NM_126259.3| Arabidopsis thaliana SOS1 (SALT OVERLY SENSITIVE 1); sodium:hydrogen antiporter AT2G01980 (SOS1) mRNA, complete cds Length = 3682 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttcatcg 272 |||||||| ||||||||||||||| Sbjct: 3446 ccttcatcttcatcttcttcatcg 3423
>gb|BC054804.1| Mus musculus potassium voltage-gated channel, shaker-related, subfamily, member 6, mRNA (cDNA clone MGC:64781 IMAGE:6838056), complete cds Length = 5393 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||||||||| |||| Sbjct: 958 cttcatcctcatcttcttcctcgt 935
>gb|AY673604.1| Pelodiscus sinensis high mobility group 1 protein mRNA, complete cds Length = 694 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 628 tcatcctcatcttcttcatc 609
>ref|XM_632862.1| Dictyostelium discoideum hypothetical protein (DDB0218769), partial mRNA Length = 675 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 589 tcatcctcatcttcttcatc 608
>ref|XM_637967.1| Dictyostelium discoideum hypothetical protein (DDB0202970), partial mRNA Length = 537 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||| |||||||||||||||| Sbjct: 463 cttcatcttcatcttcttcatcgt 440
>gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9, complete sequence Length = 150829 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 139030 cttcatcctcatcgtcttcatcgt 139053
>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence Length = 161249 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 310 cttcatcctcatcgtcttcatcgt 333
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 367265 tcatcctcatcttcttcatc 367246
>gb|AC002983.1| Arabidopsis thaliana BAC T3F12 from chromosome IV near 24 cM, complete sequence Length = 107183 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 |||| ||||||||||||||||||| Sbjct: 83569 cttcttcctcatcttcttcatcgt 83546
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 139030 cttcatcctcatcgtcttcatcgt 139053
>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence Length = 179931 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tactttaattaaacgggaaa 171 |||||||||||||||||||| Sbjct: 33725 tactttaattaaacgggaaa 33706
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 1016040 tcatcctcatcttcttcatc 1016021
>ref|XM_421587.1| PREDICTED: Gallus gallus similar to hypothetical protein D10Ertd641e (LOC423708), mRNA Length = 925 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 84 cttcatcctcatcttcttca 103
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgt 333 ||||||||||| || ||||||||||||| Sbjct: 59228 ctcatctcctcctcgatgttcacgtcgt 59201
>ref|XM_615168.2| PREDICTED: Bos taurus similar to Midasin (MIDAS-containing protein), transcript variant 1 (LOC535163), mRNA Length = 16554 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 |||| ||||||||||||||||||| Sbjct: 14122 cttcctcctcatcttcttcatcgt 14099
>ref|XM_865593.1| PREDICTED: Bos taurus similar to Midasin (MIDAS-containing protein), transcript variant 2 (LOC535163), mRNA Length = 16773 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 |||| ||||||||||||||||||| Sbjct: 14341 cttcctcctcatcttcttcatcgt 14318
>gb|BC021322.1| Mus musculus glycogen synthase 2, mRNA (cDNA clone MGC:29379 IMAGE:5051685), complete cds Length = 2532 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 2169 tcatcctcatcttcttcatc 2150
>ref|NM_145572.1| Mus musculus glycogen synthase 2 (Gys2), mRNA Length = 2532 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 2169 tcatcctcatcttcttcatc 2150
>ref|NM_013568.4| Mus musculus potassium voltage-gated channel, shaker-related, subfamily, member 6 (Kcna6), mRNA Length = 3546 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||||||||| |||| Sbjct: 920 cttcatcctcatcttcttcctcgt 897
>ref|XM_453497.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D09757g predicted mRNA Length = 1827 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 665 tcatcctcatcttcttcatc 646
>gb|AY915260.1| Schistosoma japonicum SJCHGC03916 protein mRNA, complete cds Length = 861 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 698 cttcatcctcatcttcttca 679
>gb|AC084730.2| Papio anubis clone RP41-479B1, complete sequence Length = 166929 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tctcatctcctcttctatgt 324 |||||||||||||||||||| Sbjct: 103170 tctcatctcctcttctatgt 103151
>gb|AY539899.1| Rattus norvegicus LRRGT00148 mRNA, complete cds Length = 162 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttc 268 |||||||||||||||||||| Sbjct: 98 ccttcatcctcatcttcttc 79
>gb|AC073644.10| Homo sapiens BAC clone RP11-519M4 from 7, complete sequence Length = 174359 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 71216 cttcatcctcatcttcttca 71235
>ref|XM_818810.1| Trypanosoma brucei TREU927 clone RPCI93-25E9 hypothetical protein (Tb927.8.490) partial mRNA Length = 852 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 589 cttcatcctcatcgtcttcatcgt 566
>ref|XM_568741.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNN01220) partial mRNA Length = 4506 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 293 tcatcctcatcttcttcatc 274
>emb|Z69646.1|CEF57C7 Caenorhabditis elegans Cosmid F57C7, complete sequence Length = 30148 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatcgt 273 |||||||||||||||| ||||||| Sbjct: 27581 cttcatcctcatcttcatcatcgt 27604
>ref|XM_722910.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00959) partial mRNA Length = 15222 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||| |||||||||||||||| Sbjct: 9223 cttcatcatcatcttcttcatcgt 9200
>ref|XM_673664.1| Plasmodium berghei strain ANKA hypothetical protein (PB000644.01.0) partial mRNA Length = 7827 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||| |||||||||||||||| Sbjct: 2812 cttcatcatcatcttcttcatcgt 2789
>gb|AC142340.1| Pan troglodytes BAC clone RP43-43B11 from 7, complete sequence Length = 173662 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 8358 cttcatcctcatcttcttca 8339
>emb|AL389925.10| Human DNA sequence from clone RP11-131O15 on chromosome 1 Contains the 3' end of the gene for interleukin-23 receptor (IL23R), a DnaJ (Hsp40) homolog subfamily B member 6 (DNAJB6) pseudogene and the 5' end of the gene for interleukin 12 receptor, beta 2 (IL12RB2), complete sequence Length = 122289 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 ccaggattggatttgatcag 580 |||||||||||||||||||| Sbjct: 5437 ccaggattggatttgatcag 5418
>gb|BC048782.1| Mus musculus potassium voltage-gated channel, shaker-related, subfamily, member 6, mRNA (cDNA clone MGC:54601 IMAGE:6466414), complete cds Length = 3546 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||||||||| |||| Sbjct: 920 cttcatcctcatcttcttcctcgt 897
>ref|XM_776409.1| PREDICTED: Strongylocentrotus purpuratus similar to CG7092-PA (LOC576063), partial mRNA Length = 2988 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 167 tcatcctcatcttcttcatc 148
>emb|CR857335.1| Pongo pygmaeus mRNA; cDNA DKFZp469M0132 (from clone DKFZp469M0132) Length = 2581 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 926 cttcatcctcatcatcttcatcgt 903
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 823461 tcatcctcatcttcttcatc 823480
>emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome; segment 6/7 Length = 348071 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 247642 cttcatcctcatcttcttca 247623
>emb|AL935262.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 11/11 Length = 304274 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 47253 tcatcctcatcttcttcatc 47272
>emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 24 Length = 199362 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatcgt 273 |||| ||||||||||||||||||| Sbjct: 63611 cttcttcctcatcttcttcatcgt 63634
>emb|AJ410493.1|SHE410493 Saimiriine herpesvirus 2 complete L-DNA sequence, strain C488 Length = 113027 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 67645 tcatcctcatcttcttcatc 67664
>emb|AJ457802.1|OSA457802 Oryza sativa (japonica cultivar-group) partial mRNA for putative DnaJ protein (dnaJ gene) Length = 552 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgt 333 ||||||||||| || ||||||||||||| Sbjct: 233 ctcatctcctcctcgatgttcacgtcgt 206
>emb|BX649406.10| Zebrafish DNA sequence from clone CH211-203N20 in linkage group 4 Contains two CpG islands, complete sequence Length = 141237 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgaaatataaagtatgggct 22 |||||||||||||||||||| Sbjct: 35206 tgaaatataaagtatgggct 35225
>emb|AJ438616.1|NTA438616 Nicotiana tabacum mRNA for nucleosome assembly protein 1 - like protein 4 Length = 1533 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 1087 tcatcctcatcttcttcatc 1068
>gb|AY100688.1| Cricetulus griseus calreticulin mRNA, complete cds Length = 1254 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 1199 tcatcctcatcttcttcatc 1180
>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167344 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tcttcatcgtatgcttcttg 283 |||||||||||||||||||| Sbjct: 66172 tcttcatcgtatgcttcttg 66191
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggcgcaccgccttcatcctcatct 263 ||||||||||||||||| |||||| Sbjct: 3100731 ggcgcaccgccttcatcatcatct 3100708
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 1352683 tcatcctcatcttcttcatc 1352664
>gb|AC006532.5| Arabidopsis thaliana chromosome 2 clone F14H20 map CIC11A04, complete sequence Length = 76976 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttcatcg 272 |||||||| ||||||||||||||| Sbjct: 34650 ccttcatcttcatcttcttcatcg 34627
>gb|AC006067.4| Arabidopsis thaliana chromosome 2 clone T13P21 map mi398, complete sequence Length = 126337 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 14991 cttcatcctcatcttcttca 14972
>gb|AC005398.3| Arabidopsis thaliana chromosome 2 clone T6B13 map mi398, complete sequence Length = 92524 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 91380 cttcatcctcatcttcttca 91361
>gb|AC106871.5| Homo sapiens BAC clone RP11-361D14 from 4, complete sequence Length = 159123 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttca 269 |||||||||||||||||||| Sbjct: 96064 cttcatcctcatcttcttca 96083
>gb|AY062746.1| Arabidopsis thaliana putative Na+/H+ antiporter (At2g01980; F14H20.5) mRNA, complete cds Length = 3681 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttcatcg 272 |||||||| ||||||||||||||| Sbjct: 3446 ccttcatcttcatcttcttcatcg 3423
>dbj|AB169897.1| Macaca fascicularis brain cDNA, clone: QtrA-10252, similar to human nucleolin (NCL), mRNA, RefSeq: NM_005381.1 Length = 2757 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 915 cttcatcctcatcatcttcatcgt 892
>dbj|AB168220.1| Macaca fascicularis testis cDNA clone: QtsA-10605, similar to human nucleolin (NCL), mRNA, RefSeq: NM_005381.1 Length = 2737 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 913 cttcatcctcatcatcttcatcgt 890
>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete sequence Length = 126437 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 108177 tcatcctcatcttcttcatc 108158
>dbj|AK031890.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330441F13 product:potassium voltage-gated channel, shaker-related, subfamily, member 6, full insert sequence Length = 3379 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||||||||| |||| Sbjct: 1015 cttcatcctcatcttcttcctcgt 1038
>ref|NM_171769.2| Caenorhabditis elegans SynDecaN family member (sdn-1) (sdn-1) mRNA, complete cds Length = 896 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 |||||||||||||||| ||||||| Sbjct: 489 cttcatcctcatcttcatcatcgt 466
>ref|NM_171972.3| Caenorhabditis elegans SynDecaN family member (sdn-1) (sdn-1) mRNA, complete cds Length = 1498 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 |||||||||||||||| ||||||| Sbjct: 516 cttcatcctcatcttcatcatcgt 493
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein 6430402L03 (LOC302412), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 1043 tcatcctcatcttcttcatc 1024
>ref|XM_342521.2| PREDICTED: Rattus norvegicus centromere autoantigen B (predicted) (Cenpb_predicted), mRNA Length = 2667 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 1665 tcatcctcatcttcttcatc 1646
>gb|AF256224.1|AF256224 Arabidopsis thaliana putative Na+/H+ antiporter SOS1 (SOS1) gene, complete cds Length = 6076 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ccttcatcctcatcttcttcatcg 272 |||||||| ||||||||||||||| Sbjct: 6021 ccttcatcttcatcttcttcatcg 5998
>gb|AC011001.2|AC011001 Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete sequence Length = 91608 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 14732 tcatcctcatcttcttcatc 14713
>gb|AC153521.7| Mus musculus 10 BAC RP23-292G15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202995 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gtctcttcacactgatccac 361 |||||||||||||||||||| Sbjct: 43958 gtctcttcacactgatccac 43939
>dbj|AK104315.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E04, full insert sequence Length = 1532 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgt 333 ||||||||||| || ||||||||||||| Sbjct: 1249 ctcatctcctcctcgatgttcacgtcgt 1222
>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19, complete sequence Length = 191582 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tcatcctcatcttcttcatc 271 |||||||||||||||||||| Sbjct: 74772 tcatcctcatcttcttcatc 74753
>dbj|AK061049.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G01, full insert sequence Length = 1558 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 ctcatctcctcttctatgttcacgtcgt 333 ||||||||||| || ||||||||||||| Sbjct: 1256 ctcatctcctcctcgatgttcacgtcgt 1229
>gb|AY104862.1| Zea mays PCO104800 mRNA sequence Length = 1031 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 509 aggcatgccctcgtcatttatggccttg 536 |||||| |||||||||||||| |||||| Sbjct: 361 aggcatcccctcgtcatttatcgccttg 334
>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete sequence Length = 265524 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tcttcatcgtatgcttcttg 283 |||||||||||||||||||| Sbjct: 77210 tcttcatcgtatgcttcttg 77229
>gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 of 74 of the complete sequence Length = 323840 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tactttaattaaacgggaaa 171 |||||||||||||||||||| Sbjct: 68799 tactttaattaaacgggaaa 68780
>gb|BC087527.1| Xenopus laevis hypothetical LOC496171, mRNA (cDNA clone IMAGE:7205875), partial cds Length = 1124 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 244 caccgccttcatcctcatcttcttcatc 271 ||||| ||||||||||||| |||||||| Sbjct: 422 caccgtcttcatcctcatcctcttcatc 395
>emb|CR848665.9| Zebrafish DNA sequence from clone CH211-276C2 in linkage group 15, complete sequence Length = 158232 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||| |||||||||| Sbjct: 13061 cttcatcctcatcctcttcatcgt 13038
>gb|AC141428.4| Mus musculus BAC clone RP23-127I7 from 10, complete sequence Length = 164381 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aaaaggatgaatgatactta 85 |||||||||||||||||||| Sbjct: 5059 aaaaggatgaatgatactta 5078
>gb|AC124756.4| Mus musculus BAC clone RP23-115J2 from 6, complete sequence Length = 213833 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||||||||| |||| Sbjct: 132439 cttcatcctcatcttcttcctcgt 132462
>gb|M96688.1|MUSMURINE Mus musculus (clone MK6) murine potassium channel (MK1.6) mRNA, complete cds Length = 3219 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cttcatcctcatcttcttcatcgt 273 ||||||||||||||||||| |||| Sbjct: 1603 cttcatcctcatcttcttcctcgt 1580 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,246,434 Number of Sequences: 3902068 Number of extensions: 5246434 Number of successful extensions: 109023 Number of sequences better than 10.0: 159 Number of HSP's better than 10.0 without gapping: 159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108374 Number of HSP's gapped (non-prelim): 641 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)