ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23n05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_477665.1| Oryza sativa (japonica cultivar-group), mRNA 145 2e-31
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
3dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
4dbj|AK060230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
5gb|AY105616.1| Zea mays PCO125437 mRNA sequence 94 6e-16
6gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, comp... 46 0.12
7gb|AC131103.4| Mus musculus BAC clone RP23-213K14 from chromosom... 46 0.12
8gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosom... 46 0.12
9gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, com... 46 0.12
10emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chr... 46 0.12
11gb|BC106195.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA c... 44 0.46
12ref|NM_001013773.1| Mus musculus cDNA sequence BC055004 (BC05500... 44 0.46
13gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome... 44 0.46
14gb|BC055004.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA c... 44 0.46
15ref|XM_979444.1| PREDICTED: Mus musculus gene model 454, (NCBI) ... 44 0.46
16ref|XM_984193.1| PREDICTED: Mus musculus gene model 454, (NCBI) ... 44 0.46
17ref|XM_001000527.1| PREDICTED: Mus musculus gene model 454, (NCB... 44 0.46
18gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome ... 44 0.46
19dbj|AK138922.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.46
20dbj|AK156114.1| Mus musculus activated spleen cDNA, RIKEN full-l... 44 0.46
21dbj|AK154713.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 44 0.46
22dbj|AK171365.1| Mus musculus B6-derived CD11 +ve dendritic cells... 44 0.46
23gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome... 42 1.8
24emb|CR352253.9| Zebrafish DNA sequence from clone CH211-267D1 in... 42 1.8
25emb|BX511065.4| Zebrafish DNA sequence from clone DKEY-32I16 in ... 42 1.8
26emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in... 42 1.8
27gb|AC092440.5| Homo sapiens BAC clone RP11-453O5 from 4, complet... 42 1.8
28gb|AC140734.5| Rattus norvegicus BAC CH230-55I15 (Children's Ho... 42 1.8
29emb|BX663518.10| Zebrafish DNA sequence from clone CH211-214O7 i... 42 1.8
30gb|AC154198.3| Mus musculus BAC clone RP24-393P24 from chromosom... 42 1.8
31gb|AC084456.1|AC084456 Caenorhabditis briggsae cosmid CB029P18, ... 42 1.8
32emb|BX000349.7| Zebrafish DNA sequence from clone DKEY-63L3 in l... 42 1.8
33gb|AY067317.1| Schmidtea mediterranea clone HB.4.1f unknown mRNA... 42 1.8
34gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, co... 40 7.2
35gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, co... 40 7.2
36gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 7.2
37gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 7.2
38gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 7.2
39emb|CR933526.10| Zebrafish DNA sequence from clone DKEY-208P7 in... 40 7.2
40gb|AC146549.8| Medicago truncatula clone mth2-7p18, complete seq... 40 7.2
41emb|AL365271.10| Human DNA sequence from clone RP11-307P5 on chr... 40 7.2
42gb|AY325900.1| Pseudomonas syringae pv. maculicola RpoN gene, pa... 40 7.2
43emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chr... 40 7.2
44gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, com... 40 7.2
45gb|AF538690.1| Pseudomonas alcaligenes sigma 54 (rpoN) gene, par... 40 7.2
46emb|X16474.1|PPRPONS P.putida rpoN gene for sigma Factor 40 7.2
47emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN opero... 40 7.2
48gb|BC036427.1| Homo sapiens cDNA clone IMAGE:4799216 40 7.2
49gb|BC047626.1| Homo sapiens cDNA clone IMAGE:4796028 40 7.2
50gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.2
51gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.2
52gb|AC025156.21| Homo sapiens 3 BAC RP11-494C5 (Roswell Park Canc... 40 7.2
53gb|AF283815.1|AF283815 Pseudomonas syringae pv. glycinea transcr... 40 7.2
54emb|AL928630.15| Mouse DNA sequence from clone RP23-33P17 on chr... 40 7.2
55gb|AY341911.1| Pseudomonas fluorescens probable ATP-binding comp... 40 7.2
56gb|AC010613.6| Homo sapiens chromosome 5 clone CTB-96J19, comple... 40 7.2
57gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.2
58gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, com... 40 7.2
59gb|AC104655.4| Homo sapiens BAC clone RP11-383P6 from 2, complet... 40 7.2
60gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 o... 40 7.2
61gb|AC175706.2| Mus musculus BAC clone RP24-307B22 from chromosom... 40 7.2
62gb|AF199600.1|AF199600 Pseudomonas syringae pv. maculicola alter... 40 7.2
63gb|AC102544.14| Mus musculus chromosome 8, clone RP23-118B13, co... 40 7.2
64emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 i... 40 7.2
65emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.2
66emb|CT033781.12| Mouse DNA sequence from clone RP24-85H21 on chr... 40 7.2
67gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 7.2
68emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on ch... 40 7.2
69gb|M24916.1|PSENTRAA P.putida sigma factor (ntrA) gene, complete... 40 7.2
70gb|L26916.1|PSERPON Pseudomonas aeruginosa (rpoN) gene, complete... 40 7.2
71dbj|D42111.1|TOBBY2 Tobacco mRNA 40 7.2
72dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 7.2

>ref|XM_477665.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1962

 Score =  145 bits (73), Expect = 2e-31
 Identities = 148/173 (85%)
 Strand = Plus / Minus

                                                                        
Query: 359  ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 418
            ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 1513 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 1454

                                                                        
Query: 419  ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 478
            |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 1453 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 1394

                                                                 
Query: 479  accccagcctccttcagccgctttctctcctctattgctttcttttctgactc 531
            |||||||||||||| || |||||||||||||| || ||| ||||||| |||||
Sbjct: 1393 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactc 1341



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 249
            |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 1703 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 1644

                                                                        
Query: 250  actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 309
              |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 1643 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 1584

                                                
Query: 310  accaaggccgctgcccacggcgccaataccagaacc 345
            ||| ||||||||||| || ||||||||||| |||||
Sbjct: 1583 accgaggccgctgccgacagcgccaatacccgaacc 1548



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  145 bits (73), Expect = 2e-31
 Identities = 148/173 (85%)
 Strand = Plus / Minus

                                                                            
Query: 359      ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 418
                ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 12706625 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 12706566

                                                                            
Query: 419      ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 478
                |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 12706565 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 12706506

                                                                     
Query: 479      accccagcctccttcagccgctttctctcctctattgctttcttttctgactc 531
                |||||||||||||| || |||||||||||||| || ||| ||||||| |||||
Sbjct: 12706505 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactc 12706453



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                            
Query: 190      tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 249
                |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 12706815 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 12706756

                                                                            
Query: 250      actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 309
                  |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 12706755 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 12706696

                                                    
Query: 310      accaaggccgctgcccacggcgccaataccagaacc 345
                ||| ||||||||||| || ||||||||||| |||||
Sbjct: 12706695 accgaggccgctgccgacagcgccaatacccgaacc 12706660



to top

>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0492E07
          Length = 143794

 Score =  145 bits (73), Expect = 2e-31
 Identities = 148/173 (85%)
 Strand = Plus / Minus

                                                                         
Query: 359   ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 418
             ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 81095 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 81036

                                                                         
Query: 419   ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 478
             |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 81035 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 80976

                                                                  
Query: 479   accccagcctccttcagccgctttctctcctctattgctttcttttctgactc 531
             |||||||||||||| || |||||||||||||| || ||| ||||||| |||||
Sbjct: 80975 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactc 80923



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                         
Query: 190   tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 249
             |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 81285 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 81226

                                                                         
Query: 250   actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 309
               |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 81225 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 81166

                                                 
Query: 310   accaaggccgctgcccacggcgccaataccagaacc 345
             ||| ||||||||||| || ||||||||||| |||||
Sbjct: 81165 accgaggccgctgccgacagcgccaatacccgaacc 81130



to top

>dbj|AK060230.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H02, full
            insert sequence
          Length = 1967

 Score =  145 bits (73), Expect = 2e-31
 Identities = 148/173 (85%)
 Strand = Plus / Minus

                                                                        
Query: 359  ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 418
            ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 1511 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 1452

                                                                        
Query: 419  ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 478
            |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 1451 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 1392

                                                                 
Query: 479  accccagcctccttcagccgctttctctcctctattgctttcttttctgactc 531
            |||||||||||||| || |||||||||||||| || ||| ||||||| |||||
Sbjct: 1391 accccagcctccttgagtcgctttctctcctcgatagctctcttttcagactc 1339



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 249
            |||||||||||||||| | |||||||| || ||||  |||||| | || |||||||||||
Sbjct: 1701 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagccgttgagctgctacc 1642

                                                                        
Query: 250  actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 309
              |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 1641 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 1582

                                                
Query: 310  accaaggccgctgcccacggcgccaataccagaacc 345
            ||| ||||||||||| || ||||||||||| |||||
Sbjct: 1581 accgaggccgctgccgacagcgccaatacccgaacc 1546



to top

>gb|AY105616.1| Zea mays PCO125437 mRNA sequence
          Length = 968

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 134/163 (82%)
 Strand = Plus / Minus

                                                                       
Query: 273 gccctgtcacagtcctccccatgaacttcccagctttaccaaggccgctgcccacggcgc 332
           |||||||||||||||| |||||||||||||| |||||||||||||| ||||  || || |
Sbjct: 742 gccctgtcacagtcctgcccatgaacttcccggctttaccaaggccactgctgacagcac 683

                                                                       
Query: 333 caataccagaacctaccagaccagcgccagcaccaagccctgagcccacgagcccaacac 392
           ||||||||||    || || || |||||||||||||  ||||| || ||||  || |  |
Sbjct: 682 caataccagaggtaacaaggcctgcgccagcaccaattcctgaaccaacgaaaccgaggc 623

                                                      
Query: 393 ccccggcaacgccagtgcccacaaatccaacacctgaaccaac 435
           |  || ||| |||||| ||||||||||||||||| ||||||||
Sbjct: 622 cagcgccaatgccagtacccacaaatccaacaccagaaccaac 580



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                       
Query: 458 gcatccatcgtgctgccaattaccccagcctccttcagccgctttctctcctctattgct 517
           |||||||| ||||| ||||||| ||||||||||||||| ||||| ||||||||||| |||
Sbjct: 578 gcatccattgtgctaccaattatcccagcctccttcagacgcttcctctcctctatggct 519

            
Query: 518 t 518
           |
Sbjct: 518 t 518



to top

>gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, complete sequence
          Length = 289751

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 497   cgctttctctcctctattgctttcttttctg 527
             |||||| |||| |||||||||||||||||||
Sbjct: 75851 cgctttgtctcatctattgctttcttttctg 75821



to top

>gb|AC131103.4| Mus musculus BAC clone RP23-213K14 from chromosome 19, complete
             sequence
          Length = 210370

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 500   tttctctcctctattgctttcttttct 526
             ||||||||||||||| |||||||||||
Sbjct: 62336 tttctctcctctatttctttcttttct 62362



to top

>gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosome 17, complete sequence
          Length = 158695

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 504    tctcctctattgctttcttttct 526
              |||||||||||||||||||||||
Sbjct: 148178 tctcctctattgctttcttttct 148200



to top

>gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, complete sequence
          Length = 190980

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 500    tttctctcctctattgctttcttttct 526
              ||||||||||||||| |||||||||||
Sbjct: 169648 tttctctcctctatttctttcttttct 169674



to top

>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete
             sequence
          Length = 211056

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 497   cgctttctctcctctattgctttcttttctg 527
             |||||| |||| |||||||||||||||||||
Sbjct: 31740 cgctttgtctcatctattgctttcttttctg 31770



to top

>gb|BC106195.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA clone MGC:118496
           IMAGE:6396133), complete cds
          Length = 3378

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 444 agaaggctggtcaggttgggga 423



to top

>ref|NM_001013773.1| Mus musculus cDNA sequence BC055004 (BC055004), mRNA
          Length = 2596

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 262 agaaggctggtcaggttgggga 241



to top

>gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome 5, complete sequence
          Length = 202099

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 211    agaaggctggtcaggttgggga 232
              ||||||||||||||||||||||
Sbjct: 145959 agaaggctggtcaggttgggga 145938



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 211    agaaggctggtcaggttgggga 232
              ||||||||||||||||||||||
Sbjct: 110631 agaaggctggtcaggttgggga 110652



to top

>gb|BC055004.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA clone MGC:57066
           IMAGE:6478735), complete cds
          Length = 2596

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 262 agaaggctggtcaggttgggga 241



to top

>ref|XM_979444.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1387

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 317 agaaggctggtcaggttgggga 296



to top

>ref|XM_984193.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1183

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 164 agaaggctggtcaggttgggga 143



to top

>ref|XM_001000527.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1183

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 164 agaaggctggtcaggttgggga 143



to top

>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence
          Length = 220137

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 211    agaaggctggtcaggttgggga 232
              ||||||||||||||||||||||
Sbjct: 191512 agaaggctggtcaggttgggga 191491



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 211    agaaggctggtcaggttgggga 232
              ||||||||||||||||||||||
Sbjct: 156184 agaaggctggtcaggttgggga 156205



to top

>dbj|AK138922.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530006K22 product:hypothetical
           protein, full insert sequence
          Length = 754

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 317 agaaggctggtcaggttgggga 296



to top

>dbj|AK156114.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830008F20 product:hypothetical protein,
           full insert sequence
          Length = 2381

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 agaaggctggtcaggttgggga 232
           ||||||||||||||||||||||
Sbjct: 648 agaaggctggtcaggttgggga 627



to top

>dbj|AK154713.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630104E04
            product:hypothetical protein, full insert sequence
          Length = 1554

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 211  agaaggctggtcaggttgggga 232
            ||||||||||||||||||||||
Sbjct: 1255 agaaggctggtcaggttgggga 1234



to top

>dbj|AK171365.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730044C15
            product:hypothetical protein, full insert sequence
          Length = 1554

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 211  agaaggctggtcaggttgggga 232
            ||||||||||||||||||||||
Sbjct: 1255 agaaggctggtcaggttgggga 1234



to top

>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence
          Length = 181742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 511   tattgctttcttttctgactc 531
             |||||||||||||||||||||
Sbjct: 85560 tattgctttcttttctgactc 85580



to top

>emb|CR352253.9| Zebrafish DNA sequence from clone CH211-267D1 in linkage group 13,
             complete sequence
          Length = 160748

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    taattgttgtaatttacagta 47
             |||||||||||||||||||||
Sbjct: 20646 taattgttgtaatttacagta 20626



to top

>emb|BX511065.4| Zebrafish DNA sequence from clone DKEY-32I16 in linkage group 7,
             complete sequence
          Length = 104505

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    taattgttgtaatttacagta 47
             |||||||||||||||||||||
Sbjct: 50067 taattgttgtaatttacagta 50087



to top

>emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in linkage group 18,
             complete sequence
          Length = 152387

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    taattgttgtaatttacagta 47
             |||||||||||||||||||||
Sbjct: 70820 taattgttgtaatttacagta 70800



to top

>gb|AC092440.5| Homo sapiens BAC clone RP11-453O5 from 4, complete sequence
          Length = 164781

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 259    agatatgcccaagtgccctgt 279
              |||||||||||||||||||||
Sbjct: 141115 agatatgcccaagtgccctgt 141095



to top

>gb|AC140734.5| Rattus norvegicus  BAC CH230-55I15 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 230896

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    tagaatacaataaagtaaccaacaa 95
             ||||| |||||||||||||||||||
Sbjct: 56198 tagaacacaataaagtaaccaacaa 56222



to top

>emb|BX663518.10| Zebrafish DNA sequence from clone CH211-214O7 in linkage group 7,
             complete sequence
          Length = 200579

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    ttgttgtaatttacagtaatc 50
             |||||||||||||||||||||
Sbjct: 96666 ttgttgtaatttacagtaatc 96686



to top

>gb|AC154198.3| Mus musculus BAC clone RP24-393P24 from chromosome 13, complete
             sequence
          Length = 142792

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 504   tctcctctattgctttctttt 524
             |||||||||||||||||||||
Sbjct: 65087 tctcctctattgctttctttt 65067



to top

>gb|AC084456.1|AC084456 Caenorhabditis briggsae cosmid CB029P18, complete sequence
          Length = 87408

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 508   ctctattgctttcttttctgactcc 532
             ||||||||| |||||||||||||||
Sbjct: 60643 ctctattgccttcttttctgactcc 60619



to top

>emb|BX000349.7| Zebrafish DNA sequence from clone DKEY-63L3 in linkage group 7, complete
              sequence
          Length = 173706

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     ttgttgtaatttacagtaatc 50
              |||||||||||||||||||||
Sbjct: 142042 ttgttgtaatttacagtaatc 142062



to top

>gb|AY067317.1| Schmidtea mediterranea clone HB.4.1f unknown mRNA sequence
          Length = 443

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 20 tttgtgataattgttgtaatt 40
          |||||||||||||||||||||
Sbjct: 59 tttgtgataattgttgtaatt 39



to top

>gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, complete sequence
          Length = 172081

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    ctccccatgaacttcccagc 306
              ||||||||||||||||||||
Sbjct: 146433 ctccccatgaacttcccagc 146452



to top

>gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, complete sequence
          Length = 171509

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   caagtgccctgtcacagtcc 287
             ||||||||||||||||||||
Sbjct: 11203 caagtgccctgtcacagtcc 11222



to top

>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     ctaccagaccagcgccagca 364
               ||||||||||||||||||||
Sbjct: 5017561 ctaccagaccagcgccagca 5017580



to top

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     ctaccagaccagcgccagca 364
               ||||||||||||||||||||
Sbjct: 4934909 ctaccagaccagcgccagca 4934928



to top

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     ctaccagaccagcgccagca 364
               ||||||||||||||||||||
Sbjct: 4735376 ctaccagaccagcgccagca 4735395



to top

>emb|CR933526.10| Zebrafish DNA sequence from clone DKEY-208P7 in linkage group 8,
             complete sequence
          Length = 100082

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    aatacaataaagtaaccaacaaat 97
             ||||||||||| ||||||||||||
Sbjct: 99778 aatacaataaaataaccaacaaat 99755



to top

>gb|AC146549.8| Medicago truncatula clone mth2-7p18, complete sequence
          Length = 96612

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   tcctctattgctttcttttc 525
             ||||||||||||||||||||
Sbjct: 80602 tcctctattgctttcttttc 80583



to top

>emb|AL365271.10| Human DNA sequence from clone RP11-307P5 on chromosome 6 Contains the
             3' part of a novel gene and a novel gene, complete
             sequence
          Length = 116079

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   cctctattgctttcttttct 526
             ||||||||||||||||||||
Sbjct: 37843 cctctattgctttcttttct 37824



to top

>gb|AY325900.1| Pseudomonas syringae pv. maculicola RpoN gene, partial cds
          Length = 1057

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 405 ctaccagaccagcgccagca 424



to top

>emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chromosome 20 Contains STSs
              and GSSs, complete sequence
          Length = 105964

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 349    cagaccagcgccagcaccaagccc 372
              ||||||||| ||||||||||||||
Sbjct: 100155 cagaccagcaccagcaccaagccc 100178



to top

>gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, complete sequence
          Length = 197826

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   caagtgccctgtcacagtcc 287
             ||||||||||||||||||||
Sbjct: 92838 caagtgccctgtcacagtcc 92857



to top

>gb|AF538690.1| Pseudomonas alcaligenes sigma 54 (rpoN) gene, partial cds
          Length = 1490

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 329 ctaccagaccagcgccagca 348



to top

>emb|X16474.1|PPRPONS P.putida rpoN gene for sigma Factor
          Length = 2636

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 491 ctaccagaccagcgccagca 510



to top

>emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN operon, strain A15101
          Length = 8072

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 345  ctaccagaccagcgccagca 364
            ||||||||||||||||||||
Sbjct: 4596 ctaccagaccagcgccagca 4615



to top

>gb|BC036427.1| Homo sapiens cDNA clone IMAGE:4799216
          Length = 2713

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 507  cctctattgctttcttttct 526
            ||||||||||||||||||||
Sbjct: 1706 cctctattgctttcttttct 1725



to top

>gb|BC047626.1| Homo sapiens cDNA clone IMAGE:4796028
          Length = 2706

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 507  cctctattgctttcttttct 526
            ||||||||||||||||||||
Sbjct: 1701 cctctattgctttcttttct 1720



to top

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     ctaccagaccagcgccagca 364
               ||||||||||||||||||||
Sbjct: 1060037 ctaccagaccagcgccagca 1060018



to top

>gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 18 of
            460 of the complete genome
          Length = 11320

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 315  ggccgctgcccacggcgcca 334
            ||||||||||||||||||||
Sbjct: 2477 ggccgctgcccacggcgcca 2496



to top

>gb|AC025156.21| Homo sapiens 3 BAC RP11-494C5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167906

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    ttatgtttgtgataattgttgtaa 38
             |||| |||||||||||||||||||
Sbjct: 12877 ttatatttgtgataattgttgtaa 12854



to top

>gb|AF283815.1|AF283815 Pseudomonas syringae pv. glycinea transcription initiation factor
           rpoN (rpoN), putative sigma-54 modulation protein, and
           nitrogen regulatory IIA-like protein genes, complete
           cds; and hypothetical protein gene, partial cds
          Length = 3018

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 530 ctaccagaccagcgccagca 549



to top

>emb|AL928630.15| Mouse DNA sequence from clone RP23-33P17 on chromosome 4, complete
              sequence
          Length = 202295

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 503    ctctcctctattgctttcttttct 526
              |||||||||||| |||||||||||
Sbjct: 151496 ctctcctctatttctttcttttct 151473



to top

>gb|AY341911.1| Pseudomonas fluorescens probable ATP-binding component of ABC
           transporter gene, partial cds; sigma factor RpoN (rpoN)
           and putative sigma-54 modulation protein genes, complete
           cds; and probable phosphotransferase enzyme II (ptsN)
           gene, partial cds
          Length = 2199

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 548 ctaccagaccagcgccagca 567



to top

>gb|AC010613.6| Homo sapiens chromosome 5 clone CTB-96J19, complete sequence
          Length = 87738

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    ttatgtttgtgataattgttgtaa 38
             |||| |||||||||||||||||||
Sbjct: 27742 ttatatttgtgataattgttgtaa 27719



to top

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    ggccgctgcccacggcgcca 334
              ||||||||||||||||||||
Sbjct: 189715 ggccgctgcccacggcgcca 189734



to top

>gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, complete sequence
          Length = 206295

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 348   ccagaccagcgccagcaccaagcc 371
             |||||||||| |||||||||||||
Sbjct: 32412 ccagaccagccccagcaccaagcc 32435



to top

>gb|AC104655.4| Homo sapiens BAC clone RP11-383P6 from 2, complete sequence
          Length = 95616

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   aacagtggagctgctaccac 251
             ||||||||||||||||||||
Sbjct: 87779 aacagtggagctgctaccac 87760



to top

>gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 of the complete
            genome
          Length = 11340

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 345  ctaccagaccagcgccagca 364
            ||||||||||||||||||||
Sbjct: 4135 ctaccagaccagcgccagca 4154



to top

>gb|AC175706.2| Mus musculus BAC clone RP24-307B22 from chromosome y, complete sequence
          Length = 186810

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 503    ctctcctctattgctttcttttct 526
              |||||||||||| |||||||||||
Sbjct: 148031 ctctcctctatttctttcttttct 148008



to top

>gb|AF199600.1|AF199600 Pseudomonas syringae pv. maculicola alternative sigma factor RpoN
           (rpoN) gene, complete cds
          Length = 1770

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 575 ctaccagaccagcgccagca 594



to top

>gb|AC102544.14| Mus musculus chromosome 8, clone RP23-118B13, complete sequence
          Length = 224946

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 503    ctctcctctattgctttcttttct 526
              |||||||||||| |||||||||||
Sbjct: 112557 ctctcctctatttctttcttttct 112534



to top

>emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14,
             complete sequence
          Length = 221928

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    aattgttgtaatttacagta 47
             ||||||||||||||||||||
Sbjct: 30115 aattgttgtaatttacagta 30096



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     ctaccagaccagcgccagca 364
               ||||||||||||||||||||
Sbjct: 1147277 ctaccagaccagcgccagca 1147258



to top

>emb|CT033781.12| Mouse DNA sequence from clone RP24-85H21 on chromosome 13, complete
             sequence
          Length = 206653

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 503   ctctcctctattgctttcttttct 526
             |||||||||||| |||||||||||
Sbjct: 23510 ctctcctctatttctttcttttct 23533



to top

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     ctaccagaccagcgccagca 364
               ||||||||||||||||||||
Sbjct: 1095726 ctaccagaccagcgccagca 1095707



to top

>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete
            sequence
          Length = 147002

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 466  cgtgctgccaattaccccagcctc 489
            ||||||||||||| ||||||||||
Sbjct: 3999 cgtgctgccaatttccccagcctc 3976



to top

>gb|M24916.1|PSENTRAA P.putida sigma factor (ntrA) gene, complete cds
          Length = 2756

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 928 ctaccagaccagcgccagca 947



to top

>gb|L26916.1|PSERPON Pseudomonas aeruginosa (rpoN) gene, complete cds; ORF1, complete
           cds; ORF2, complete cds
          Length = 2663

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 345 ctaccagaccagcgccagca 364
           ||||||||||||||||||||
Sbjct: 517 ctaccagaccagcgccagca 536



to top

>dbj|D42111.1|TOBBY2 Tobacco mRNA
          Length = 1532

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 416 aatccaacacctgaaccaac 435
           ||||||||||||||||||||
Sbjct: 683 aatccaacacctgaaccaac 664



to top

>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 486    cctccttcagccgctttctctcct 509
              ||||||||||||||||||| ||||
Sbjct: 152172 cctccttcagccgctttctgtcct 152195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,565,673
Number of Sequences: 3902068
Number of extensions: 4565673
Number of successful extensions: 96909
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96441
Number of HSP's gapped (non-prelim): 468
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top