ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Y10117.1|ZMSRP9 Z.mays mRNA for signal recognition particle ... 329 6e-87
2gb|AY112444.1| Zea mays CL1900_1 mRNA sequence 218 2e-53
3dbj|AK068347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 2e-50
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
5dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
6dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
7gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 42 2.0
8gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 2.0
9emb|AL954143.9| Zebrafish DNA sequence from clone CH211-206A7 in... 42 2.0
10gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 2.0
11emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chr... 42 2.0
12gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
13gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, c... 40 8.0
14gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 8.0
15ref|XM_360221.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.0
16gb|AY657586.1| Synthetic construct Peudomonas aeruginosa clone F... 40 8.0
17gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome ... 40 8.0
18emb|BX062092.1|CNS09K2O Single read from an extremity of a full-... 40 8.0
19emb|BX062091.1|CNS09K2N Single read from an extremity of a full-... 40 8.0
20emb|BX035162.1|CNS08ZAM Single read from an extremity of a full-... 40 8.0
21emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome... 40 8.0
22emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 8.0
23dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 8.0
24gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.0
25dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
26dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
27dbj|AB126051.1| Bombyx mori DNA, chromosome W, BAC clone 45J23S-... 40 8.0
28gb|AE004744.1| Pseudomonas aeruginosa PAO1, section 305 of 529 o... 40 8.0
29dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
30gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 8.0
31gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 8.0
32gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
33dbj|AP006675.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.0

>emb|Y10117.1|ZMSRP9 Z.mays mRNA for signal recognition particle subunit 9
          Length = 765

 Score =  329 bits (166), Expect = 6e-87
 Identities = 274/310 (88%)
 Strand = Plus / Minus

                                                                       
Query: 172 tgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctgaaacc 231
           |||||||| ||||| || ||||| | |||||| ||||| |||||||||||||||||||| 
Sbjct: 419 tgcctccttccccgacctttcttcgcttgctgttgctctgcctgttccttccctgaaact 360

                                                                       
Query: 232 tcgcttatatcagcatcaggtccacgagtcatgagagcgaaaaagatgttgttgagcttt 291
           || || |||||| ||||||| ||||| ||||||||||| |||||||||||||||||||| 
Sbjct: 359 tcactgatatcaacatcaggcccacgtgtcatgagagcaaaaaagatgttgttgagcttc 300

                                                                       
Query: 292 tccatcttctttgcatcctgagcttgatccgtcttaaacttcaagcactcgcggtcgtcg 351
           |||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 299 tccatcttctttgcgtcttgagcttgatctgtcttgaacttcaagcactcgcggtcgtcg 240

                                                                       
Query: 352 gtgaccttgagcacgagcttcccgtcgcagtgccggtacttcatgcaatagcgagtggtg 411
           ||||||||||||||||||||||| ||||||||||||||||||||    ||||| |||| |
Sbjct: 239 gtgaccttgagcacgagcttcccctcgcagtgccggtacttcatcacgtagcgggtggcg 180

                                                                       
Query: 412 atggggtcggcgcggaagagctgcacggaccggtcaacgaactcgtcccaggagtcgaag 471
            |||||||| ||||||||||||||||||| || || |||||||| ||||| || || | |
Sbjct: 179 ttggggtcgccgcggaagagctgcacggaacgctccacgaactcctcccaagaatccacg 120

                     
Query: 472 tacaccatcg 481
           ||||||||||
Sbjct: 119 tacaccatcg 110



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>gb|AY112444.1| Zea mays CL1900_1 mRNA sequence
          Length = 747

 Score =  218 bits (110), Expect = 2e-53
 Identities = 170/190 (89%)
 Strand = Plus / Minus

                                                                       
Query: 292 tccatcttctttgcatcctgagcttgatccgtcttaaacttcaagcactcgcggtcgtcg 351
           |||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 299 tccatcttctttgcgtcttgagcttgatctgtcttgaacttcaagcactcgcggtcgtcg 240

                                                                       
Query: 352 gtgaccttgagcacgagcttcccgtcgcagtgccggtacttcatgcaatagcgagtggtg 411
           ||||||||||||||||||||||| ||||||||||||||||||||    ||||| |||| |
Sbjct: 239 gtgaccttgagcacgagcttcccctcgcagtgccggtacttcatcacgtagcgggtggcg 180

                                                                       
Query: 412 atggggtcggcgcggaagagctgcacggaccggtcaacgaactcgtcccaggagtcgaag 471
            |||||||| |||||||||||||||||||||| || |||||||| ||||| || || | |
Sbjct: 179 ttggggtcgccgcggaagagctgcacggaccgctccacgaactcctcccaagaatccacg 120

                     
Query: 472 tacaccatcg 481
           ||||||||||
Sbjct: 119 tacaccatcg 110



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 172 tgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctgaaacc 231
           |||||||| ||||| || ||||| | |||||| ||||| |||||||||||||||||||| 
Sbjct: 419 tgcctccttccccgacctttcttcgtttgctgttgctctgcctgttccttccctgaaact 360

                       
Query: 232 tcgcttatatca 243
           || || ||||||
Sbjct: 359 tcactgatatca 348



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>dbj|AK068347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150F06, full
            insert sequence
          Length = 3414

 Score =  208 bits (105), Expect = 2e-50
 Identities = 156/173 (90%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctactgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctga 227
            |||||||||||||||||| || |||||||||||||| || || |||||||||||||| ||
Sbjct: 3222 ctactgcctcctgccccggcctttctttgattgctgttgttctgcctgttccttccccga 3163

                                                                        
Query: 228  aacctcgcttatatcagcatcaggtccacgagtcatgagagcgaaaaagatgttgttgag 287
            ||| || ||||||||||||||||||||| | ||||||||||  ||||| ||| |||| ||
Sbjct: 3162 aacatcacttatatcagcatcaggtccatgggtcatgagagtaaaaaaaatggtgttcag 3103

                                                                 
Query: 288  cttttccatcttctttgcatcctgagcttgatccgtcttaaacttcaagcact 340
             |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3102 tttttccatcttctttgcatcctgagcttgatctgtcttaaacttcaagcact 3050



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                 
Query: 339 ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392
           |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 409 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 356



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                         
Query: 448 acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493
           |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 197 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 152



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%)
 Strand = Plus / Plus

                                                                           
Query: 245     catcaggtccacgagtcatgagagcgaaaaagatgttgttgagcttttccatcttctttg 304
               ||||||||||| | ||||||||||  ||||| ||| |||| || ||||||||||||||||
Sbjct: 8205733 catcaggtccatgggtcatgagagtaaaaaaaatggtgttcagtttttccatcttctttg 8205792

                                                   
Query: 305     catcctgagcttgatccgtcttaaacttcaagcact 340
               |||||||||||||||| |||||||||||||||||||
Sbjct: 8205793 catcctgagcttgatctgtcttaaacttcaagcact 8205828



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                           
Query: 168     ctactgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctga 227
               |||||||||||||||||| || |||||||||||||| || || |||||||||||||| ||
Sbjct: 8205563 ctactgcctcctgccccggcctttctttgattgctgttgttctgcctgttccttccccga 8205622

                                 
Query: 228     aacctcgcttatatcagc 245
               ||| || |||||||||||
Sbjct: 8205623 aacatcacttatatcagc 8205640



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                     
Query: 339     ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392
               |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8208468 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 8208521



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                             
Query: 448     acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493
               |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 8208680 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 8208725



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>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0624H09
          Length = 158719

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%)
 Strand = Plus / Plus

                                                                         
Query: 245   catcaggtccacgagtcatgagagcgaaaaagatgttgttgagcttttccatcttctttg 304
             ||||||||||| | ||||||||||  ||||| ||| |||| || ||||||||||||||||
Sbjct: 98096 catcaggtccatgggtcatgagagtaaaaaaaatggtgttcagtttttccatcttctttg 98155

                                                 
Query: 305   catcctgagcttgatccgtcttaaacttcaagcact 340
             |||||||||||||||| |||||||||||||||||||
Sbjct: 98156 catcctgagcttgatctgtcttaaacttcaagcact 98191



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                         
Query: 168   ctactgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctga 227
             |||||||||||||||||| || |||||||||||||| || || |||||||||||||| ||
Sbjct: 97926 ctactgcctcctgccccggcctttctttgattgctgttgttctgcctgttccttccccga 97985

                               
Query: 228   aacctcgcttatatcagc 245
             ||| || |||||||||||
Sbjct: 97986 aacatcacttatatcagc 98003



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                    
Query: 339    ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392
              |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 100831 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 100884



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                            
Query: 448    acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493
              |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 101043 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 101088



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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0603C10
          Length = 187620

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                  
Query: 339  ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392
            |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1973 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 2026



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                          
Query: 448  acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493
            |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 2185 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 2230



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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   gcggcggcgctggccggaggc 504
             |||||||||||||||||||||
Sbjct: 27501 gcggcggcgctggccggaggc 27521



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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 192     ctttgattgctgctgctccgc 212
               |||||||||||||||||||||
Sbjct: 1981918 ctttgattgctgctgctccgc 1981938



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>emb|AL954143.9| Zebrafish DNA sequence from clone CH211-206A7 in linkage group 19,
            complete sequence
          Length = 168515

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 49   gttctgtaccaggaaaaggatccaa 73
            |||||||| ||||||||||||||||
Sbjct: 4763 gttctgtaacaggaaaaggatccaa 4739



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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 192     ctttgattgctgctgctccgc 212
               |||||||||||||||||||||
Sbjct: 2301197 ctttgattgctgctgctccgc 2301177



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>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete
             sequence
          Length = 230674

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acctgattgtgtgggtaagtg 39
             |||||||||||||||||||||
Sbjct: 71896 acctgattgtgtgggtaagtg 71916



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>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0045P14, complete sequence
          Length = 121894

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   gcggcggcgctggccggagg 503
             ||||||||||||||||||||
Sbjct: 19620 gcggcggcgctggccggagg 19639



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>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence
          Length = 214202

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   tttccatcttctttgcatcctgag 313
             ||||||||||||| ||||||||||
Sbjct: 78042 tttccatcttcttagcatcctgag 78019



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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     cgctgcggcggcgctggccg 499
               ||||||||||||||||||||
Sbjct: 3653464 cgctgcggcggcgctggccg 3653445



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>ref|XM_360221.1| Magnaporthe grisea 70-15 hypothetical protein (MG05595.4) partial
           mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gagtggtgatggggtcggcgcgga 427
           ||||||||||||||||| ||||||
Sbjct: 369 gagtggtgatggggtcgtcgcgga 346



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>gb|AY657586.1| Synthetic construct Peudomonas aeruginosa clone FLH040848.01F
           PA3214 gene, partial cds
          Length = 645

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 gcggcggcgctggccggagg 503
           ||||||||||||||||||||
Sbjct: 152 gcggcggcgctggccggagg 133



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>gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome 14, complete sequence
          Length = 181062

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    ttgttgagcttttccatctt 299
              ||||||||||||||||||||
Sbjct: 107132 ttgttgagcttttccatctt 107113



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>emb|BX062092.1|CNS09K2O Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC43AH05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 992

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  aatgatggcccacattgtcttcac 95
           |||||||||||||||| |||||||
Sbjct: 494 aatgatggcccacattttcttcac 517



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>emb|BX062091.1|CNS09K2N Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC43AH05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 938

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  aatgatggcccacattgtcttcac 95
           |||||||||||||||| |||||||
Sbjct: 896 aatgatggcccacattttcttcac 873



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>emb|BX035162.1|CNS08ZAM Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA6BE09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 648

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  aatgatggcccacattgtcttcac 95
           |||||||||||||||| |||||||
Sbjct: 488 aatgatggcccacattttcttcac 511



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>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13
          Length = 349563

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    cgctgcggcggcgctggccg 499
              ||||||||||||||||||||
Sbjct: 190901 cgctgcggcggcgctggccg 190882



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>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14
          Length = 308050

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    cgctgcggcggcgctggccg 499
              ||||||||||||||||||||
Sbjct: 170152 cgctgcggcggcgctggccg 170133



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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 326     taaacttcaagcactcgcggtcgt 349
               ||||| ||||||||||||||||||
Sbjct: 1102312 taaacatcaagcactcgcggtcgt 1102289



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 287     gcttttccatcttctttgcatcct 310
               ||||||||| ||||||||||||||
Sbjct: 1380731 gcttttccagcttctttgcatcct 1380708



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      gcggcggcgctggccggagg 503
                ||||||||||||||||||||
Sbjct: 10830100 gcggcggcgctggccggagg 10830119



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 484     gcggcggcgctggccggagg 503
               ||||||||||||||||||||
Sbjct: 2652754 gcggcggcgctggccggagg 2652773



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>dbj|AB126051.1| Bombyx mori DNA, chromosome W, BAC clone 45J23S-2, non-LTR
            retrotransposon partial sequence
          Length = 4007

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 345  gtcgtcggtgaccttgagca 364
            ||||||||||||||||||||
Sbjct: 1980 gtcgtcggtgaccttgagca 1961



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>gb|AE004744.1| Pseudomonas aeruginosa PAO1, section 305 of 529 of the complete genome
          Length = 14719

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   gcggcggcgctggccggagg 503
             ||||||||||||||||||||
Sbjct: 13089 gcggcggcgctggccggagg 13070



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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   gcggcggcgctggccggagg 503
             ||||||||||||||||||||
Sbjct: 78472 gcggcggcgctggccggagg 78491



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 480     cgctgcggcggcgctggccg 499
               ||||||||||||||||||||
Sbjct: 2960595 cgctgcggcggcgctggccg 2960614



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 414     ggggtcggcgcggaagagctgcac 437
               ||||||||||| ||||||||||||
Sbjct: 2441368 ggggtcggcgccgaagagctgcac 2441391



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      gcggcggcgctggccggagg 503
                ||||||||||||||||||||
Sbjct: 10909289 gcggcggcgctggccggagg 10909308



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>dbj|AP006675.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04L10, TM0370,
            complete sequence
          Length = 97544

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  tgttgttgagcttttccatc 297
            ||||||||||||||||||||
Sbjct: 2569 tgttgttgagcttttccatc 2588


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,330,576
Number of Sequences: 3902068
Number of extensions: 4330576
Number of successful extensions: 85487
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85040
Number of HSP's gapped (non-prelim): 445
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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