| Clone Name | rbags23n01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y10117.1|ZMSRP9 Z.mays mRNA for signal recognition particle subunit 9 Length = 765 Score = 329 bits (166), Expect = 6e-87 Identities = 274/310 (88%) Strand = Plus / Minus Query: 172 tgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctgaaacc 231 |||||||| ||||| || ||||| | |||||| ||||| |||||||||||||||||||| Sbjct: 419 tgcctccttccccgacctttcttcgcttgctgttgctctgcctgttccttccctgaaact 360 Query: 232 tcgcttatatcagcatcaggtccacgagtcatgagagcgaaaaagatgttgttgagcttt 291 || || |||||| ||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct: 359 tcactgatatcaacatcaggcccacgtgtcatgagagcaaaaaagatgttgttgagcttc 300 Query: 292 tccatcttctttgcatcctgagcttgatccgtcttaaacttcaagcactcgcggtcgtcg 351 |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 299 tccatcttctttgcgtcttgagcttgatctgtcttgaacttcaagcactcgcggtcgtcg 240 Query: 352 gtgaccttgagcacgagcttcccgtcgcagtgccggtacttcatgcaatagcgagtggtg 411 ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| | Sbjct: 239 gtgaccttgagcacgagcttcccctcgcagtgccggtacttcatcacgtagcgggtggcg 180 Query: 412 atggggtcggcgcggaagagctgcacggaccggtcaacgaactcgtcccaggagtcgaag 471 |||||||| ||||||||||||||||||| || || |||||||| ||||| || || | | Sbjct: 179 ttggggtcgccgcggaagagctgcacggaacgctccacgaactcctcccaagaatccacg 120 Query: 472 tacaccatcg 481 |||||||||| Sbjct: 119 tacaccatcg 110
>gb|AY112444.1| Zea mays CL1900_1 mRNA sequence Length = 747 Score = 218 bits (110), Expect = 2e-53 Identities = 170/190 (89%) Strand = Plus / Minus Query: 292 tccatcttctttgcatcctgagcttgatccgtcttaaacttcaagcactcgcggtcgtcg 351 |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 299 tccatcttctttgcgtcttgagcttgatctgtcttgaacttcaagcactcgcggtcgtcg 240 Query: 352 gtgaccttgagcacgagcttcccgtcgcagtgccggtacttcatgcaatagcgagtggtg 411 ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| | Sbjct: 239 gtgaccttgagcacgagcttcccctcgcagtgccggtacttcatcacgtagcgggtggcg 180 Query: 412 atggggtcggcgcggaagagctgcacggaccggtcaacgaactcgtcccaggagtcgaag 471 |||||||| |||||||||||||||||||||| || |||||||| ||||| || || | | Sbjct: 179 ttggggtcgccgcggaagagctgcacggaccgctccacgaactcctcccaagaatccacg 120 Query: 472 tacaccatcg 481 |||||||||| Sbjct: 119 tacaccatcg 110 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 172 tgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctgaaacc 231 |||||||| ||||| || ||||| | |||||| ||||| |||||||||||||||||||| Sbjct: 419 tgcctccttccccgacctttcttcgtttgctgttgctctgcctgttccttccctgaaact 360 Query: 232 tcgcttatatca 243 || || |||||| Sbjct: 359 tcactgatatca 348
>dbj|AK068347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150F06, full insert sequence Length = 3414 Score = 208 bits (105), Expect = 2e-50 Identities = 156/173 (90%) Strand = Plus / Minus Query: 168 ctactgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctga 227 |||||||||||||||||| || |||||||||||||| || || |||||||||||||| || Sbjct: 3222 ctactgcctcctgccccggcctttctttgattgctgttgttctgcctgttccttccccga 3163 Query: 228 aacctcgcttatatcagcatcaggtccacgagtcatgagagcgaaaaagatgttgttgag 287 ||| || ||||||||||||||||||||| | |||||||||| ||||| ||| |||| || Sbjct: 3162 aacatcacttatatcagcatcaggtccatgggtcatgagagtaaaaaaaatggtgttcag 3103 Query: 288 cttttccatcttctttgcatcctgagcttgatccgtcttaaacttcaagcact 340 |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3102 tttttccatcttctttgcatcctgagcttgatctgtcttaaacttcaagcact 3050 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 339 ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392 |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 409 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 356 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 448 acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493 |||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 197 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 152
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 119 bits (60), Expect = 1e-23 Identities = 87/96 (90%) Strand = Plus / Plus Query: 245 catcaggtccacgagtcatgagagcgaaaaagatgttgttgagcttttccatcttctttg 304 ||||||||||| | |||||||||| ||||| ||| |||| || |||||||||||||||| Sbjct: 8205733 catcaggtccatgggtcatgagagtaaaaaaaatggtgttcagtttttccatcttctttg 8205792 Query: 305 catcctgagcttgatccgtcttaaacttcaagcact 340 |||||||||||||||| ||||||||||||||||||| Sbjct: 8205793 catcctgagcttgatctgtcttaaacttcaagcact 8205828 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Plus Query: 168 ctactgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctga 227 |||||||||||||||||| || |||||||||||||| || || |||||||||||||| || Sbjct: 8205563 ctactgcctcctgccccggcctttctttgattgctgttgttctgcctgttccttccccga 8205622 Query: 228 aacctcgcttatatcagc 245 ||| || ||||||||||| Sbjct: 8205623 aacatcacttatatcagc 8205640 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 339 ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392 |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 8208468 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 8208521 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 448 acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493 |||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 8208680 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 8208725
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 119 bits (60), Expect = 1e-23 Identities = 87/96 (90%) Strand = Plus / Plus Query: 245 catcaggtccacgagtcatgagagcgaaaaagatgttgttgagcttttccatcttctttg 304 ||||||||||| | |||||||||| ||||| ||| |||| || |||||||||||||||| Sbjct: 98096 catcaggtccatgggtcatgagagtaaaaaaaatggtgttcagtttttccatcttctttg 98155 Query: 305 catcctgagcttgatccgtcttaaacttcaagcact 340 |||||||||||||||| ||||||||||||||||||| Sbjct: 98156 catcctgagcttgatctgtcttaaacttcaagcact 98191 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Plus Query: 168 ctactgcctcctgccccgtcccttctttgattgctgctgctccgcctgttccttccctga 227 |||||||||||||||||| || |||||||||||||| || || |||||||||||||| || Sbjct: 97926 ctactgcctcctgccccggcctttctttgattgctgttgttctgcctgttccttccccga 97985 Query: 228 aacctcgcttatatcagc 245 ||| || ||||||||||| Sbjct: 97986 aacatcacttatatcagc 98003 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 339 ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392 |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 100831 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 100884 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 448 acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493 |||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 101043 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 101088
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 339 ctcgcggtcgtcggtgaccttgagcacgagcttcccgtcgcagtgccggtactt 392 |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1973 ctcgtggttgtcggtgaccttgagcacgagcttcccttcgcagtgccggtactt 2026 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 448 acgaactcgtcccaggagtcgaagtacaccatcgctgcggcggcgc 493 |||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 2185 acgaactcgtcccacgaatcgaagtacaccatcgctgcggcggcgc 2230
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 gcggcggcgctggccggaggc 504 ||||||||||||||||||||| Sbjct: 27501 gcggcggcgctggccggaggc 27521
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ctttgattgctgctgctccgc 212 ||||||||||||||||||||| Sbjct: 1981918 ctttgattgctgctgctccgc 1981938
>emb|AL954143.9| Zebrafish DNA sequence from clone CH211-206A7 in linkage group 19, complete sequence Length = 168515 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 gttctgtaccaggaaaaggatccaa 73 |||||||| |||||||||||||||| Sbjct: 4763 gttctgtaacaggaaaaggatccaa 4739
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ctttgattgctgctgctccgc 212 ||||||||||||||||||||| Sbjct: 2301197 ctttgattgctgctgctccgc 2301177
>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete sequence Length = 230674 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 acctgattgtgtgggtaagtg 39 ||||||||||||||||||||| Sbjct: 71896 acctgattgtgtgggtaagtg 71916
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gcggcggcgctggccggagg 503 |||||||||||||||||||| Sbjct: 19620 gcggcggcgctggccggagg 19639
>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence Length = 214202 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tttccatcttctttgcatcctgag 313 ||||||||||||| |||||||||| Sbjct: 78042 tttccatcttcttagcatcctgag 78019
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 cgctgcggcggcgctggccg 499 |||||||||||||||||||| Sbjct: 3653464 cgctgcggcggcgctggccg 3653445
>ref|XM_360221.1| Magnaporthe grisea 70-15 hypothetical protein (MG05595.4) partial mRNA Length = 1476 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 gagtggtgatggggtcggcgcgga 427 ||||||||||||||||| |||||| Sbjct: 369 gagtggtgatggggtcgtcgcgga 346
>gb|AY657586.1| Synthetic construct Peudomonas aeruginosa clone FLH040848.01F PA3214 gene, partial cds Length = 645 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 gcggcggcgctggccggagg 503 |||||||||||||||||||| Sbjct: 152 gcggcggcgctggccggagg 133
>gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome 14, complete sequence Length = 181062 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ttgttgagcttttccatctt 299 |||||||||||||||||||| Sbjct: 107132 ttgttgagcttttccatctt 107113
>emb|BX062092.1|CNS09K2O Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC43AH05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 992 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 aatgatggcccacattgtcttcac 95 |||||||||||||||| ||||||| Sbjct: 494 aatgatggcccacattttcttcac 517
>emb|BX062091.1|CNS09K2N Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC43AH05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 938 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 aatgatggcccacattgtcttcac 95 |||||||||||||||| ||||||| Sbjct: 896 aatgatggcccacattttcttcac 873
>emb|BX035162.1|CNS08ZAM Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA6BE09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 648 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 aatgatggcccacattgtcttcac 95 |||||||||||||||| ||||||| Sbjct: 488 aatgatggcccacattttcttcac 511
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 cgctgcggcggcgctggccg 499 |||||||||||||||||||| Sbjct: 190901 cgctgcggcggcgctggccg 190882
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 cgctgcggcggcgctggccg 499 |||||||||||||||||||| Sbjct: 170152 cgctgcggcggcgctggccg 170133
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 taaacttcaagcactcgcggtcgt 349 ||||| |||||||||||||||||| Sbjct: 1102312 taaacatcaagcactcgcggtcgt 1102289
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 gcttttccatcttctttgcatcct 310 ||||||||| |||||||||||||| Sbjct: 1380731 gcttttccagcttctttgcatcct 1380708
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gcggcggcgctggccggagg 503 |||||||||||||||||||| Sbjct: 10830100 gcggcggcgctggccggagg 10830119
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gcggcggcgctggccggagg 503 |||||||||||||||||||| Sbjct: 2652754 gcggcggcgctggccggagg 2652773
>dbj|AB126051.1| Bombyx mori DNA, chromosome W, BAC clone 45J23S-2, non-LTR retrotransposon partial sequence Length = 4007 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gtcgtcggtgaccttgagca 364 |||||||||||||||||||| Sbjct: 1980 gtcgtcggtgaccttgagca 1961
>gb|AE004744.1| Pseudomonas aeruginosa PAO1, section 305 of 529 of the complete genome Length = 14719 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 gcggcggcgctggccggagg 503 |||||||||||||||||||| Sbjct: 13089 gcggcggcgctggccggagg 13070
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gcggcggcgctggccggagg 503 |||||||||||||||||||| Sbjct: 78472 gcggcggcgctggccggagg 78491
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 cgctgcggcggcgctggccg 499 |||||||||||||||||||| Sbjct: 2960595 cgctgcggcggcgctggccg 2960614
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 ggggtcggcgcggaagagctgcac 437 ||||||||||| |||||||||||| Sbjct: 2441368 ggggtcggcgccgaagagctgcac 2441391
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gcggcggcgctggccggagg 503 |||||||||||||||||||| Sbjct: 10909289 gcggcggcgctggccggagg 10909308
>dbj|AP006675.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04L10, TM0370, complete sequence Length = 97544 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 tgttgttgagcttttccatc 297 |||||||||||||||||||| Sbjct: 2569 tgttgttgagcttttccatc 2588 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,330,576 Number of Sequences: 3902068 Number of extensions: 4330576 Number of successful extensions: 85487 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85040 Number of HSP's gapped (non-prelim): 445 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)