ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KNAT3_ARATH (P48000) Homeobox protein knotted-1-like 3 (KNAT3) 30 1.1
2LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-bind... 29 2.4
3GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 29 2.4
4MRAW_WOLTR (Q5GTH5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-) 29 2.4
5FUSB_BURCE (P24127) Fusaric acid resistance protein fusB 28 4.1
6PURL_BARQU (Q6FZI9) Phosphoribosylformylglycinamidine synthase I... 28 5.4
7HBA_CATCL (P02017) Hemoglobin alpha subunit (Hemoglobin alpha ch... 28 7.0
8ZAN_MOUSE (O88799) Zonadhesin precursor 28 7.0
9MTMR2_MOUSE (Q9Z2D1) Myotubularin-related protein 2 (EC 3.1.3.-) 27 9.1
10FDHA_DESGI (Q934F5) Formate dehydrogenase alpha subunit precurso... 27 9.1
11NOCP_AGRT5 (P35116) Nopaline permease ATP-binding protein P 27 9.1
12SWI10_SCHPO (Q06182) Mating-type switching protein swi10 27 9.1

>KNAT3_ARATH (P48000) Homeobox protein knotted-1-like 3 (KNAT3)|
          Length = 431

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 188 SSSSTATNSRPTASASSKWLARSLLCFCMQFLEQRQQIALGELGDAVDVRDDLLGGVE 361
           +SSS + +S   A+A+++WL+RS       FL++        +GD +   DD+ GG +
Sbjct: 75  ASSSDSPSSAAAAAAANQWLSRS-----SSFLQRNNNNNASIVGDGI---DDVTGGAD 124



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>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
            precursor (LTBP-3)
          Length = 1268

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 243  GWLDHCSVFVCSFWSSGSKSRLANSAMRSTSG 338
            GW DHC ++ C  +SS     L     R  SG
Sbjct: 944  GWGDHCEIYPCPVYSSAEFHSLVPDGKRLHSG 975



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 373 RFAALDAAKEVIPDVDRIAEFAK 305
           RFAA  AAK V+PD +++ +F +
Sbjct: 201 RFAAHPAAKRVLPDTEKVVQFTR 223



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>MRAW_WOLTR (Q5GTH5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 333

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = -2

Query: 154 IRLFRDCTINY---IRMYIDIF*SVHSLI----LLCM*SPSEISKMSYIXNGGVQ 11
           I+ + D  I Y   ++++I+ F ++ S++    L  +  PS +SK+S I + G+Q
Sbjct: 55  IKFYEDLNIKYPSRVKLFIEKFSNIRSILDSNSLEYLVEPSAVSKLSSIISSGIQ 109



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>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB|
          Length = 142

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 273 CSFWSSGSKSRLANSAMRSTSGMTSLAASSAAKRPR 380
           CS W S   SR A  A R+T+     A+ S A RPR
Sbjct: 107 CSCWRSPCGSRCAPPAPRATATSAVTASCSPAIRPR 142



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>PURL_BARQU (Q6FZI9) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 736

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = +2

Query: 158 GTEGVLCILISSSSTATNSRPTASASSKWLARSLLCFCMQFLEQRQQIALGELGDA 325
           G  G +      + +    RPT      ++ + LL  C++ +E +  +A+ ++G A
Sbjct: 218 GVGGAMMASAEFNDSIDEKRPTVQVGDPFIEKCLLEACLELMELKAIVAIQDMGAA 273



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>HBA_CATCL (P02017) Hemoglobin alpha subunit (Hemoglobin alpha chain)|
           (Alpha-globin)
          Length = 142

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 293 QQIALGELGDAVDVRDDLLGGV 358
           +++ +G +GDAV   DDLLGG+
Sbjct: 60  KKVIMGAIGDAVTKFDDLLGGL 81



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>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 207  PIRGLLLALAVNGWLDHCSVFVCSFWSSGSKSRLANSAMRST 332
            P    LL L  + +LD+C   +CSF     K     SAM +T
Sbjct: 1493 PFEACLLHLKASSFLDNCVTDMCSFQGLQQKLCARMSAMTAT 1534



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>MTMR2_MOUSE (Q9Z2D1) Myotubularin-related protein 2 (EC 3.1.3.-)|
          Length = 643

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 370 FAALDAAKEVIPDVD--RIAEFAKRDLLPLLQKLHTKTEQ*SSQPFTASASSRPRIGGGA 197
           + AL      IPD +  R+A F  R  +P+L  +H +++       T +  S+P +G   
Sbjct: 240 YPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQA------TVTRCSQPMVGVSG 293

Query: 196 AA*NKDAQY 170
               +D +Y
Sbjct: 294 KRSKEDEKY 302



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>FDHA_DESGI (Q934F5) Formate dehydrogenase alpha subunit precursor (EC 1.2.1.2)|
           (FDH alpha subunit) (Formate dehydrogenase large
           subunit)
          Length = 1012

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 373 RFAALDAAKEVIPDVDRIAEFAKRDLLPLLQKLHTKTEQ*SSQPFT 236
           R+   +  K  IPD D I E AKR     +QKL  KT    + P T
Sbjct: 627 RYVGPEPRKNAIPDGDLIVELAKR-----VQKLLAKTPGKLAAPVT 667



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>NOCP_AGRT5 (P35116) Nopaline permease ATP-binding protein P|
          Length = 257

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 167 GVLCILISSSSTATNSRPTASASSKWLARSLLCFCMQFLE--QRQQIALGELGDAVDVRD 340
           G L IL   S TA      +   S    +S    CM FLE   + +IA+G+  + V V+ 
Sbjct: 18  GTLEILKGISLTANKGDVVSIIGSSGSGKSTFLRCMNFLETPNKGRIAVGQ--EEVVVKT 75

Query: 341 DLLG---GVERGK 370
           D  G   GV+R K
Sbjct: 76  DAAGRLIGVDRKK 88



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>SWI10_SCHPO (Q06182) Mating-type switching protein swi10|
          Length = 252

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 92  TLKYVYIHPYVVYSAISK--KSY 154
           +LKY ++HP  +YS ISK  KSY
Sbjct: 84  SLKYHHLHPEYIYSRISKLGKSY 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,244,731
Number of Sequences: 219361
Number of extensions: 822195
Number of successful extensions: 2290
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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