Clone Information

BLAST Search Result

Clone Name	rbags23m20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467437.1\| Oryza sativa (japonica cultivar-group), mRNA	472	e-130
2	dbj\|AK065045.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	472	e-130
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	202	1e-48
4	dbj\|AP003983.3\| Oryza sativa (japonica cultivar-group) genomic D...	202	1e-48
5	ref\|NM_111209.2\| Arabidopsis thaliana protein binding / serine-t...	46	0.15
6	emb\|AL355984.11\| Human DNA sequence from clone RP11-501K3 on chr...	46	0.15
7	gb\|AY078951.1\| Arabidopsis thaliana AT3g03380/T21P5_20 mRNA, com...	46	0.15
8	gb\|BT002727.1\| Arabidopsis thaliana At3g03380/T21P5_20 gene, com...	46	0.15
9	gb\|AC162528.5\| Mus musculus BAC clone RP23-4P1 from chromosome 5...	42	2.3
10	gb\|AC151577.2\| Mus musculus BAC clone RP23-371D23 from chromosom...	42	2.3
11	gb\|AC116798.11\| Mus musculus chromosome 1, clone RP24-329K22, co...	42	2.3
12	gb\|AC087555.3\| Papio anubis clone RP41-63I4, complete sequence	42	2.3
13	gb\|AC123665.9\| Mus musculus chromosome 14, clone RP23-226A4, com...	42	2.3
14	emb\|CR382398.1\| Plasmodium falciparum chromosome 6, complete seq...	42	2.3
15	gb\|DP000005.1\| Macaca mulatta target 1 genomic scaffold	42	2.3
16	gb\|DP000029.1\| Cercopithecus aethiops target 1 genomic scaffold	42	2.3
17	gb\|AC122151.4\| Macaca mulatta clone CH250-492A14, complete sequence	42	2.3
18	gb\|AC139303.3\| Cercopithecus aethiops clone CH252-456L3, complet...	42	2.3
19	gb\|AC142502.3\| Mus musculus BAC clone RP24-530L11 from 3, comple...	42	2.3
20	gb\|AC153316.3\| Colobus guereza clone CH272-352J9, complete sequence	42	2.3
21	gb\|AC156016.2\| Mus musculus BAC clone RP24-320A12 from chromosom...	42	2.3
22	gb\|AC137127.11\| Mus musculus chromosome 9, clone RP24-264F17, co...	40	9.2
23	gb\|AC009394.5\| Drosophila melanogaster clone BACR03J17, complete...	40	9.2
24	gb\|AC009462.7\| Drosophila melanogaster clone BACR27G04, complete...	40	9.2
25	gb\|AC135420.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.2
26	ref\|XM_001003764.1\| PREDICTED: Mus musculus gamma-aminobutyric a...	40	9.2
27	ref\|XM_917722.2\| PREDICTED: Mus musculus gamma-aminobutyric acid...	40	9.2
28	ref\|XM_285181.6\| PREDICTED: Mus musculus gamma-aminobutyric acid...	40	9.2
29	gb\|AY318871.1\| Canarypox virus strain ATCC VR-111, complete genome	40	9.2
30	emb\|AL513166.7\| Human DNA sequence from clone RP11-261J10 on chr...	40	9.2
31	gb\|AC069504.7\| Homo sapiens 3 BAC RP11-263A24 (Roswell Park Canc...	40	9.2
32	gb\|AC090671.5\| Homo sapiens 12 BAC RP11-755O11 (Roswell Park Can...	40	9.2
33	gb\|AC091096.7\| Homo sapiens chromosome 8, clone RP11-587H10, com...	40	9.2
34	gb\|AY040765.1\| Mus musculus histidine triad protein 3 gene, comp...	40	9.2
35	gb\|AY998454.1\| Solanum pectinatum voucher Peeke 8512 IND tRNA-Se...	40	9.2
36	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
37	gb\|AC022193.5\|AC022193 Homo sapiens, clone RP11-23B3, complete s...	40	9.2
38	gb\|AC154854.2\| Mus musculus BAC clone RP23-23O4 from chromosome ...	40	9.2
39	gb\|AC011301.9\| Homo sapiens BAC clone RP11-299I20 from 2, comple...	40	9.2
40	gb\|AC007274.3\|AC007274 Homo sapiens BAC clone RP11-105L10 from Y...	40	9.2
41	gb\|AC006195.1\|AC006195 Homo sapiens clone RP11-350H1 from 7p14-1...	40	9.2
42	gb\|CP000033.1\| Lactobacillus acidophilus NCFM, complete genome	40	9.2
43	gb\|AC123027.4\| Mus musculus BAC clone RP24-550H11 from 3, comple...	40	9.2
44	gb\|AE003721.3\| Drosophila melanogaster chromosome 3R, section 59...	40	9.2
45	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	9.2
46	emb\|AL732626.8\| Mouse DNA sequence from clone RP23-191F22 on chr...	40	9.2

>ref|XM_467437.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3793

 Score =  472 bits (238), Expect = e-130
 Identities = 390/438 (89%), Gaps = 2/438 (0%)
 Strand = Plus / Minus

                                                                        
Query: 236  tgcaacgcttttattgttctcctcttccatgtgtcggtctccggttcaaaagtgagctcc 295
            ||||||||||||||| ||| |||||||||||||   ||||| ||||||||  ||||||||
Sbjct: 3468 tgcaacgcttttattattcccctcttccatgtggaagtctctggttcaaacctgagctcc 3409

                                                                        
Query: 296  caggtcggccaatagtgaaggtcctgtttcagagtgagcacccgtggtttcccgttcaaa 355
            ||||||||||| ||||||||||||||||||| ||| ||||| || ||||| || ||||||
Sbjct: 3408 caggtcggccagtagtgaaggtcctgtttcaaagtaagcacacgaggtttgccattcaaa 3349

                                                                        
Query: 356  tggacggtcttcaccctaacaaactcacggtcttccaatcccttcaccacttgaataaag 415
            |||||||||  |||||||||||| ||||  | ||||||||||||||||||||| ||||| 
Sbjct: 3348 tggacggtccgcaccctaacaaattcaccattttccaatcccttcaccacttgtataaaa 3289

                                                                        
Query: 416  gactccagatctggagttggttgcccattaacttcaactatccactggagagcatatagg 475
            |  || |||||||||||||| | |||||||||||| ||||||||||| |||||||| || 
Sbjct: 3288 gtttcaagatctggagttggcttcccattaacttccactatccactgcagagcatagaga 3229

                                                                        
Query: 476  ccatatctatgtacgggacttccatggcaccacctagcaacataaactccatgaccttcc 535
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 3228 ccatatctatgtacgggacttccatgacaccatctagcaacataaactccatgaccttct 3169

                                                                        
Query: 536  ttgggcaaaaaaccaagtgcacgcactgctgaatgaggatcctgaattatggatccacac 595
            | |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct: 3168 tcgggcaaaaaaccaagtgcgcgcactgctgaatgaggatcctggattatgcatccacac 3109

                                                                        
Query: 596  caattcaccattcctcgttgaaccattaccatctcttacatcggttccaacaacaagggt 655
            |||||||||| |||  ||||  ||||| ||||||||||||||||||||||||| || | |
Sbjct: 3108 caattcacca-tccgtgttgttccattgccatctcttacatcggttccaacaataa-gat 3051

                              
Query: 656  caatttcttttccctgac 673
            ||||||||||||||||||
Sbjct: 3050 caatttcttttccctgac 3033



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   aattatccacaggcaatgaa 67
            ||||||||||||||||||||
Sbjct: 3709 aattatccacaggcaatgaa 3690

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>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full
            insert sequence
          Length = 3793

 Score =  472 bits (238), Expect = e-130
 Identities = 390/438 (89%), Gaps = 2/438 (0%)
 Strand = Plus / Minus

                                                                        
Query: 236  tgcaacgcttttattgttctcctcttccatgtgtcggtctccggttcaaaagtgagctcc 295
            ||||||||||||||| ||| |||||||||||||   ||||| ||||||||  ||||||||
Sbjct: 3468 tgcaacgcttttattattcccctcttccatgtggaagtctctggttcaaacctgagctcc 3409

                                                                        
Query: 296  caggtcggccaatagtgaaggtcctgtttcagagtgagcacccgtggtttcccgttcaaa 355
            ||||||||||| ||||||||||||||||||| ||| ||||| || ||||| || ||||||
Sbjct: 3408 caggtcggccagtagtgaaggtcctgtttcaaagtaagcacacgaggtttgccattcaaa 3349

                                                                        
Query: 356  tggacggtcttcaccctaacaaactcacggtcttccaatcccttcaccacttgaataaag 415
            |||||||||  |||||||||||| ||||  | ||||||||||||||||||||| ||||| 
Sbjct: 3348 tggacggtccgcaccctaacaaattcaccattttccaatcccttcaccacttgtataaaa 3289

                                                                        
Query: 416  gactccagatctggagttggttgcccattaacttcaactatccactggagagcatatagg 475
            |  || |||||||||||||| | |||||||||||| ||||||||||| |||||||| || 
Sbjct: 3288 gtttcaagatctggagttggcttcccattaacttccactatccactgcagagcatagaga 3229

                                                                        
Query: 476  ccatatctatgtacgggacttccatggcaccacctagcaacataaactccatgaccttcc 535
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 3228 ccatatctatgtacgggacttccatgacaccatctagcaacataaactccatgaccttct 3169

                                                                        
Query: 536  ttgggcaaaaaaccaagtgcacgcactgctgaatgaggatcctgaattatggatccacac 595
            | |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct: 3168 tcgggcaaaaaaccaagtgcgcgcactgctgaatgaggatcctggattatgcatccacac 3109

                                                                        
Query: 596  caattcaccattcctcgttgaaccattaccatctcttacatcggttccaacaacaagggt 655
            |||||||||| |||  ||||  ||||| ||||||||||||||||||||||||| || | |
Sbjct: 3108 caattcacca-tccgtgttgttccattgccatctcttacatcggttccaacaataa-gat 3051

                              
Query: 656  caatttcttttccctgac 673
            ||||||||||||||||||
Sbjct: 3050 caatttcttttccctgac 3033

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  202 bits (102), Expect = 1e-48
 Identities = 152/166 (91%), Gaps = 2/166 (1%)
 Strand = Plus / Plus

                                                                            
Query: 506      cacctagcaacataaactccatgaccttccttgggcaaaaaaccaagtgcacgcactgct 565
                ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct: 29503338 cacctagcaacataaactccatgaccttcttcgggcaaaaaaccaagtgcgcgcactgct 29503397

                                                                            
Query: 566      gaatgaggatcctgaattatggatccacaccaattcaccattcctcgttgaaccattacc 625
                |||||||||||||| |||||| |||||||||||||||||| |||  ||||  ||||| ||
Sbjct: 29503398 gaatgaggatcctggattatgcatccacaccaattcacca-tccgtgttgttccattgcc 29503456

                                                              
Query: 626      atctcttacatcggttccaacaacaagggtcaatttcttttccctg 671
                ||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 29503457 atctcttacatcggttccaacaataa-gatcaatttcttttccctg 29503501



 Score =  157 bits (79), Expect = 6e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                            
Query: 236      tgcaacgcttttattgttctcctcttccatgtgtcggtctccggttcaaaagtgagctcc 295
                ||||||||||||||| ||| |||||||||||||   ||||| ||||||||  ||||||||
Sbjct: 29502251 tgcaacgcttttattattcccctcttccatgtggaagtctctggttcaaacctgagctcc 29502310

                                                                            
Query: 296      caggtcggccaatagtgaaggtcctgtttcagagtgagcacccgtggtttcccgttcaaa 355
                ||||||||||| ||||||||||||||||||| ||| ||||| || ||||| || ||||||
Sbjct: 29502311 caggtcggccagtagtgaaggtcctgtttcaaagtaagcacacgaggtttgccattcaaa 29502370

                                                           
Query: 356      tggacggtcttcaccctaacaaactcacggtcttccaatccct 398
                |||||||||  |||||||||||| ||||  | |||||||||||
Sbjct: 29502371 tggacggtccgcaccctaacaaattcaccattttccaatccct 29502413



 Score =  127 bits (64), Expect = 5e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                            
Query: 396      ccttcaccacttgaataaaggactccagatctggagttggttgcccattaacttcaacta 455
                ||||||||||||| ||||| |  || |||||||||||||| | |||||||||||| ||||
Sbjct: 29502529 ccttcaccacttgtataaaagtttcaagatctggagttggcttcccattaacttccacta 29502588

                                                                    
Query: 456      tccactggagagcatataggccatatctatgtacgggacttccatggcacca 507
                ||||||| |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 29502589 tccactgcagagcatagagaccatatctatgtacgggacttccatgacacca 29502640



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 48       aattatccacaggcaatgaa 67
                ||||||||||||||||||||
Sbjct: 29502010 aattatccacaggcaatgaa 29502029

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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1038_A06
          Length = 147836

 Score =  202 bits (102), Expect = 1e-48
 Identities = 152/166 (91%), Gaps = 2/166 (1%)
 Strand = Plus / Plus

                                                                         
Query: 506   cacctagcaacataaactccatgaccttccttgggcaaaaaaccaagtgcacgcactgct 565
             ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct: 98368 cacctagcaacataaactccatgaccttcttcgggcaaaaaaccaagtgcgcgcactgct 98427

                                                                         
Query: 566   gaatgaggatcctgaattatggatccacaccaattcaccattcctcgttgaaccattacc 625
             |||||||||||||| |||||| |||||||||||||||||| |||  ||||  ||||| ||
Sbjct: 98428 gaatgaggatcctggattatgcatccacaccaattcacca-tccgtgttgttccattgcc 98486

                                                           
Query: 626   atctcttacatcggttccaacaacaagggtcaatttcttttccctg 671
             ||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 98487 atctcttacatcggttccaacaataa-gatcaatttcttttccctg 98531



 Score =  157 bits (79), Expect = 6e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                         
Query: 236   tgcaacgcttttattgttctcctcttccatgtgtcggtctccggttcaaaagtgagctcc 295
             ||||||||||||||| ||| |||||||||||||   ||||| ||||||||  ||||||||
Sbjct: 97281 tgcaacgcttttattattcccctcttccatgtggaagtctctggttcaaacctgagctcc 97340

                                                                         
Query: 296   caggtcggccaatagtgaaggtcctgtttcagagtgagcacccgtggtttcccgttcaaa 355
             ||||||||||| ||||||||||||||||||| ||| ||||| || ||||| || ||||||
Sbjct: 97341 caggtcggccagtagtgaaggtcctgtttcaaagtaagcacacgaggtttgccattcaaa 97400

                                                        
Query: 356   tggacggtcttcaccctaacaaactcacggtcttccaatccct 398
             |||||||||  |||||||||||| ||||  | |||||||||||
Sbjct: 97401 tggacggtccgcaccctaacaaattcaccattttccaatccct 97443



 Score =  127 bits (64), Expect = 5e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                         
Query: 396   ccttcaccacttgaataaaggactccagatctggagttggttgcccattaacttcaacta 455
             ||||||||||||| ||||| |  || |||||||||||||| | |||||||||||| ||||
Sbjct: 97559 ccttcaccacttgtataaaagtttcaagatctggagttggcttcccattaacttccacta 97618

                                                                 
Query: 456   tccactggagagcatataggccatatctatgtacgggacttccatggcacca 507
             ||||||| |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 97619 tccactgcagagcatagagaccatatctatgtacgggacttccatgacacca 97670



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aattatccacaggcaatgaa 67
             ||||||||||||||||||||
Sbjct: 97040 aattatccacaggcaatgaa 97059

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>ref|NM_111209.2| Arabidopsis thaliana protein binding / serine-type endopeptidase/
            serine-type peptidase/ trypsin AT3G03380 mRNA, complete
            cds
          Length = 3602

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 113/143 (79%)
 Strand = Plus / Minus

                                                                        
Query: 439  cccattaacttcaactatccactggagagcatataggccatatctatgtacgggacttcc 498
            |||||||||||| || ||||| || || || || ||||||||||  ||  ||||||| ||
Sbjct: 3192 cccattaacttccacgatccattgaagcgcgtagaggccatatcggtgagcgggactccc 3133

                                                                        
Query: 499  atggcaccacctagcaacataaactccatgaccttccttgggcaaaaaaccaagtgcacg 558
             || ||||| || |  ||||| || |||||||||||||  || | ||| ||||| |||||
Sbjct: 3132 gtgacaccatcttgtgacatagacaccatgaccttcctcaggaagaaatccaagagcacg 3073

                                   
Query: 559  cactgctgaatgaggatcctgaa 581
             || || | ||||||||||||||
Sbjct: 3072 aaccgcaggatgaggatcctgaa 3050

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>emb|AL355984.11| Human DNA sequence from clone RP11-501K3 on chromosome 13 Contains the
             GJB6 gene for gap junction protein, beta 6 (connexin 30)
             and 2 CpG islands, complete sequence
          Length = 160536

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 5     aaaatatatgaaataggtacagaaaag 31
             ||||||||||||||| |||||||||||
Sbjct: 74740 aaaatatatgaaatatgtacagaaaag 74714

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>gb|AY078951.1| Arabidopsis thaliana AT3g03380/T21P5_20 mRNA, complete cds
          Length = 3604

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 113/143 (79%)
 Strand = Plus / Minus

                                                                        
Query: 439  cccattaacttcaactatccactggagagcatataggccatatctatgtacgggacttcc 498
            |||||||||||| || ||||| || || || || ||||||||||  ||  ||||||| ||
Sbjct: 3192 cccattaacttccacgatccattgaagcgcgtagaggccatatcggtgagcgggactccc 3133

                                                                        
Query: 499  atggcaccacctagcaacataaactccatgaccttccttgggcaaaaaaccaagtgcacg 558
             || ||||| || |  ||||| || |||||||||||||  || | ||| ||||| |||||
Sbjct: 3132 gtgacaccatcttgtgacatagacaccatgaccttcctcaggaagaaatccaagagcacg 3073

                                   
Query: 559  cactgctgaatgaggatcctgaa 581
             || || | ||||||||||||||
Sbjct: 3072 aaccgcaggatgaggatcctgaa 3050

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>gb|BT002727.1| Arabidopsis thaliana At3g03380/T21P5_20 gene, complete cds
          Length = 3294

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 113/143 (79%)
 Strand = Plus / Minus

                                                                        
Query: 439  cccattaacttcaactatccactggagagcatataggccatatctatgtacgggacttcc 498
            |||||||||||| || ||||| || || || || ||||||||||  ||  ||||||| ||
Sbjct: 3087 cccattaacttccacgatccattgaagcgcgtagaggccatatcggtgagcgggactccc 3028

                                                                        
Query: 499  atggcaccacctagcaacataaactccatgaccttccttgggcaaaaaaccaagtgcacg 558
             || ||||| || |  ||||| || |||||||||||||  || | ||| ||||| |||||
Sbjct: 3027 gtgacaccatcttgtgacatagacaccatgaccttcctcaggaagaaatccaagagcacg 2968

                                   
Query: 559  cactgctgaatgaggatcctgaa 581
             || || | ||||||||||||||
Sbjct: 2967 aaccgcaggatgaggatcctgaa 2945

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>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence
          Length = 219218

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 537    tgggcaaaaaaccaagtgcac 557
              |||||||||||||||||||||
Sbjct: 125704 tgggcaaaaaaccaagtgcac 125684

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>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence
          Length = 206735

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 537    tgggcaaaaaaccaagtgcac 557
              |||||||||||||||||||||
Sbjct: 147755 tgggcaaaaaaccaagtgcac 147775

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>gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, complete sequence
          Length = 173479

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   ttcctcgcctctccatgcttg 170
             |||||||||||||||||||||
Sbjct: 93705 ttcctcgcctctccatgcttg 93685

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>gb|AC087555.3| Papio anubis clone RP41-63I4, complete sequence
          Length = 157673

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 409   aataaaggactccagatctgg 429
             |||||||||||||||||||||
Sbjct: 81966 aataaaggactccagatctgg 81986

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>gb|AC123665.9| Mus musculus chromosome 14, clone RP23-226A4, complete sequence
          Length = 241576

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 595   ccaattcaccattcctcgttg 615
             |||||||||||||||||||||
Sbjct: 26660 ccaattcaccattcctcgttg 26640

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>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      aataaaaatatatgaaatagg 21
              |||||||||||||||||||||
Sbjct: 197401 aataaaaatatatgaaatagg 197421

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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 409     aataaaggactccagatctgg 429
               |||||||||||||||||||||
Sbjct: 1091277 aataaaggactccagatctgg 1091297

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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 409     aataaaggactccagatctgg 429
               |||||||||||||||||||||
Sbjct: 1111662 aataaaggactccagatctgg 1111682

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>gb|AC122151.4| Macaca mulatta clone CH250-492A14, complete sequence
          Length = 170601

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 409   aataaaggactccagatctgg 429
             |||||||||||||||||||||
Sbjct: 82064 aataaaggactccagatctgg 82084

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>gb|AC139303.3| Cercopithecus aethiops clone CH252-456L3, complete sequence
          Length = 179499

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 409    aataaaggactccagatctgg 429
              |||||||||||||||||||||
Sbjct: 100710 aataaaggactccagatctgg 100730

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>gb|AC142502.3| Mus musculus BAC clone RP24-530L11 from 3, complete sequence
          Length = 160259

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    ctccatgcttggccttcctaa 180
              |||||||||||||||||||||
Sbjct: 124107 ctccatgcttggccttcctaa 124087

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>gb|AC153316.3| Colobus guereza clone CH272-352J9, complete sequence
          Length = 129503

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 409    aataaaggactccagatctgg 429
              |||||||||||||||||||||
Sbjct: 110996 aataaaggactccagatctgg 111016

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>gb|AC156016.2| Mus musculus BAC clone RP24-320A12 from chromosome 14, complete
            sequence
          Length = 154465

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 595  ccaattcaccattcctcgttg 615
            |||||||||||||||||||||
Sbjct: 1553 ccaattcaccattcctcgttg 1573

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>gb|AC137127.11| Mus musculus chromosome 9, clone RP24-264F17, complete sequence
          Length = 181842

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 309   agtgaaggtcctgtttcagagtga 332
             |||||||||||||| |||||||||
Sbjct: 63810 agtgaaggtcctgtgtcagagtga 63833

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>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence
          Length = 199043

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ataaaaatatatgaaatagg 21
             ||||||||||||||||||||
Sbjct: 26393 ataaaaatatatgaaatagg 26412

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>gb|AC009462.7| Drosophila melanogaster clone BACR27G04, complete sequence
          Length = 151609

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      ataaaaatatatgaaatagg 21
              ||||||||||||||||||||
Sbjct: 106463 ataaaaatatatgaaatagg 106482

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>gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17,
              complete sequence
          Length = 174949

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    ttgcccattaacttcaacta 455
              ||||||||||||||||||||
Sbjct: 135118 ttgcccattaacttcaacta 135099

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>ref|XM_001003764.1| PREDICTED: Mus musculus gamma-aminobutyric acid (GABA) receptor,
           rho 3, transcript variant 2 (Gabrr3), mRNA
          Length = 1456

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 gcatcgacagcatttcagag 149
           ||||||||||||||||||||
Sbjct: 269 gcatcgacagcatttcagag 288

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>ref|XM_917722.2| PREDICTED: Mus musculus gamma-aminobutyric acid (GABA) receptor,
           rho 3, transcript variant 3 (Gabrr3), mRNA
          Length = 1456

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 gcatcgacagcatttcagag 149
           ||||||||||||||||||||
Sbjct: 269 gcatcgacagcatttcagag 288

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>ref|XM_285181.6| PREDICTED: Mus musculus gamma-aminobutyric acid (GABA) receptor,
           rho 3, transcript variant 1 (Gabrr3), mRNA
          Length = 1456

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 gcatcgacagcatttcagag 149
           ||||||||||||||||||||
Sbjct: 269 gcatcgacagcatttcagag 288

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>gb|AY318871.1| Canarypox virus strain ATCC VR-111, complete genome
          Length = 359853

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 1     aataaaaatatatgaaataggtacagaa 28
             ||||||| || |||||||||||||||||
Sbjct: 28885 aataaaagtagatgaaataggtacagaa 28858

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>emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chromosome 1, complete
             sequence
          Length = 170817

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   tggccttcctaaagaaggcc 188
             ||||||||||||||||||||
Sbjct: 13243 tggccttcctaaagaaggcc 13262

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>gb|AC069504.7| Homo sapiens 3 BAC RP11-263A24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39624

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ataaaaatatatgaaatagg 21
             ||||||||||||||||||||
Sbjct: 30433 ataaaaatatatgaaatagg 30452

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>gb|AC090671.5| Homo sapiens 12 BAC RP11-755O11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 186298

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aaaaatatatgaaataggta 23
             ||||||||||||||||||||
Sbjct: 16813 aaaaatatatgaaataggta 16832

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>gb|AC091096.7| Homo sapiens chromosome 8, clone RP11-587H10, complete sequence
          Length = 207630

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    gcccactgaaaatatcacaa 205
              ||||||||||||||||||||
Sbjct: 185838 gcccactgaaaatatcacaa 185819

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>gb|AY040765.1| Mus musculus histidine triad protein 3 gene, complete cds
          Length = 2916

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ataaaaatatatgaaatagg 21
            ||||||||||||||||||||
Sbjct: 2901 ataaaaatatatgaaatagg 2882

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>gb|AY998454.1| Solanum pectinatum voucher Peeke 8512 IND tRNA-Ser (trnS) gene,
           partial sequence; trnS-trnG intergenic spacer, complete
           sequence; and tRNA-Gly (trnG) gene, partial sequence;
           chloroplast
          Length = 688

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   aataaaaatatatgaaatag 20
           ||||||||||||||||||||
Sbjct: 431 aataaaaatatatgaaatag 450

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 436     ttgcccattaacttcaacta 455
               ||||||||||||||||||||
Sbjct: 8045527 ttgcccattaacttcaacta 8045508

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>gb|AC022193.5|AC022193 Homo sapiens, clone RP11-23B3, complete sequence
          Length = 184228

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    gcccactgaaaatatcacaa 205
              ||||||||||||||||||||
Sbjct: 106215 gcccactgaaaatatcacaa 106234

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>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence
          Length = 209970

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    gcatcgacagcatttcagag 149
              ||||||||||||||||||||
Sbjct: 118975 gcatcgacagcatttcagag 118994

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>gb|AC011301.9| Homo sapiens BAC clone RP11-299I20 from 2, complete sequence
          Length = 166424

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    cacggtcttccaatcccttc 400
              ||||||||||||||||||||
Sbjct: 155550 cacggtcttccaatcccttc 155569

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>gb|AC007274.3|AC007274 Homo sapiens BAC clone RP11-105L10 from Y, complete sequence
          Length = 117309

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 76    gtcatctattgaattacactatatccta 103
             ||||| ||||||||||||||||| ||||
Sbjct: 55997 gtcatttattgaattacactataaccta 55970

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>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence
          Length = 150242

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      ataaaaatatatgaaatagg 21
              ||||||||||||||||||||
Sbjct: 140438 ataaaaatatatgaaatagg 140457

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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    agatctggagttggttgccc 441
              ||||||||||||||||||||
Sbjct: 503868 agatctggagttggttgccc 503887

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>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence
          Length = 191211

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 523   tccatgaccttccttgggcaaaaa 546
             ||||||| ||||||||||||||||
Sbjct: 53596 tccatgagcttccttgggcaaaaa 53573

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>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the
             complete sequence
          Length = 224889

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ataaaaatatatgaaatagg 21
             ||||||||||||||||||||
Sbjct: 46887 ataaaaatatatgaaatagg 46906

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 479   tatctatgtacgggacttccatggcacc 506
             ||||||||||||||| | ||||||||||
Sbjct: 29640 tatctatgtacgggagtcccatggcacc 29613

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>emb|AL732626.8| Mouse DNA sequence from clone RP23-191F22 on chromosome 4, complete
             sequence
          Length = 151688

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ataaaaatatatgaaatagg 21
             ||||||||||||||||||||
Sbjct: 91473 ataaaaatatatgaaatagg 91492


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,238,537
Number of Sequences: 3902068
Number of extensions: 6238537
Number of successful extensions: 116299
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 116086
Number of HSP's gapped (non-prelim): 205
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result