>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  112 bits (280), Expect = 3e-25
 Identities = 56/85 (65%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
 Frame = -3

Query: 397 LGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGL 224
           +GGG+ +   +D++GRK   KGVYQFVDKYGANVDGYSPIY  EEW+ +GD YAGGTTGL
Sbjct: 55  IGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGL 114

Query: 223 LIWAVTXXXXXXXXXXLVYNTSALA 149
           LIWAVT          LVYNTSALA
Sbjct: 115 LIWAVTLAGLLAGGALLVYNTSALA 139

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  107 bits (267), Expect = 1e-23
 Identities = 54/84 (64%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
 Frame = -3

Query: 394 GGGLTVD--IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLL 221
           GGG+     +DA+GR    KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL 
Sbjct: 54  GGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLF 113

Query: 220 IWAVTXXXXXXXXXXLVYNTSALA 149
           +WAVT          LVY+TSALA
Sbjct: 114 LWAVTLAGILLGGALLVYSTSALA 137

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  106 bits (265), Expect = 2e-23
 Identities = 52/75 (69%), Positives = 56/75 (74%)
 Frame = -3

Query: 373 IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXX 194
           +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT    
Sbjct: 63  VDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGI 122

Query: 193 XXXXXXLVYNTSALA 149
                 LVYNTSALA
Sbjct: 123 LAGGALLVYNTSALA 137

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  106 bits (265), Expect = 2e-23
 Identities = 52/75 (69%), Positives = 56/75 (74%)
 Frame = -3

Query: 373 IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXX 194
           +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT    
Sbjct: 63  VDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGI 122

Query: 193 XXXXXXLVYNTSALA 149
                 LVYNTSALA
Sbjct: 123 LAGGALLVYNTSALA 137

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  105 bits (261), Expect = 5e-23
 Identities = 51/75 (68%), Positives = 56/75 (74%)
 Frame = -3

Query: 373 IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXX 194
           +DA+GRK   KGVYQFVDKYGANVDGYSPIY  ++WS SGD Y GGTTGL IWAVT    
Sbjct: 61  VDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGI 120

Query: 193 XXXXXXLVYNTSALA 149
                 LV+NTSALA
Sbjct: 121 LAGGALLVFNTSALA 135

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  101 bits (251), Expect = 8e-22
 Identities = 50/75 (66%), Positives = 54/75 (72%)
 Frame = -3

Query: 373 IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXX 194
           +DA+GRK    GVY+FVDKYGANVDGYSPIY  +EWS SGD Y GG TGL IWAVT    
Sbjct: 66  VDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGI 125

Query: 193 XXXXXXLVYNTSALA 149
                 LVYNTSALA
Sbjct: 126 LAGGALLVYNTSALA 140

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 49/75 (65%), Positives = 53/75 (70%)
 Frame = -3

Query: 373 IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXX 194
           +DA+GRK    GVY++VDKYGANVDGYSPIY   EWS SGD Y GG TGL IWAVT    
Sbjct: 65  VDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGI 124

Query: 193 XXXXXXLVYNTSALA 149
                 LVYNTSALA
Sbjct: 125 LAGGALLVYNTSALA 139

>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 370  DANGRKVGKKGVYQFVDKYGANVDGYSPIYTPE 272
            D +  KV  + V + ++ +G N++GYS + TP+
Sbjct: 1046 DKSSDKVLSRRVLRLLESFGPNLEGYSHLITPK 1078

>DYH5_HUMAN (Q8TE73) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy|
           chain 5) (HL1)
          Length = 4624

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 334 YQFV-DKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWA 212
           YQ + + YGA++D  S +YT +++     R      G ++WA
Sbjct: 589 YQLILENYGADIDMISKLYTKQKYDPPLARNQPPIAGKILWA 630

>SYE_MYCH2 (Q601G1) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 467

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 406 RTSLGGGLTVDIDANGRKVGK--KGVYQFVDKY 314
           +T   G LT+  D NG+K+ K  K ++QF++ Y
Sbjct: 233 KTPKFGHLTIITDKNGKKLSKRDKSLFQFIEDY 265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,247,579
Number of Sequences: 219361
Number of extensions: 592214
Number of successful extensions: 1812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)