ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B2_DAUCA (P37707) B2 protein 177 2e-44
2H6ST3_MOUSE (Q9QYK4) Heparan-sulfate 6-O-sulfotransferase 3 (EC ... 32 1.1
3METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homoc... 30 7.3
4VAL1_BCTV (P14991) AL1 protein (40.8 kDa protein) 30 7.3
5SMR3A_HUMAN (Q99954) Submaxillary gland androgen-regulated prote... 30 7.3
6AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK) 29 9.6

>B2_DAUCA (P37707) B2 protein|
          Length = 207

 Score =  177 bits (450), Expect = 2e-44
 Identities = 82/94 (87%), Positives = 88/94 (93%)
 Frame = -2

Query: 614 GLPLFLYNYSTHQLHGIFEAASFGGANIDPAAWEDKKCNGESRFPAQVRVATRKICDPLE 435
           GLPLFLYNYSTHQLHG+FEAASFGG NIDP AWEDKK  GESRFPAQVRV TRKIC+PLE
Sbjct: 111 GLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLE 170

Query: 434 EDAFRPILHHYDGPKFRLELSITEALSLLDIFED 333
           ED+FRPILHHYDGPKFRLEL+I EA+SLLDIFE+
Sbjct: 171 EDSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204



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>H6ST3_MOUSE (Q9QYK4) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)|
           (HS6ST-3) (mHS6ST-3)
          Length = 470

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = -1

Query: 480 CTGEGGHKEDLRPTGGGRIPPYPAPLRRAQVPARAQHHRGSLPP 349
           CT  G   E LR +G  R P  P+P RRAQ P      R  LPP
Sbjct: 34  CTNFG---EQLR-SGEARPPAVPSPARRAQAPLDEWERRPQLPP 73



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>METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 761

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 380 ELSITEALSLLDIFEDKDDA**RLLSADQGTVEEGTACNKMDW 252
           E++   AL+LLD  +D ++A  +++  D+    EG    K DW
Sbjct: 575 EIAYQIALALLDEVKDLENAGIKVIQIDEPAFREGAPLKKRDW 617



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>VAL1_BCTV (P14991) AL1 protein (40.8 kDa protein)|
          Length = 358

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 76  PXQYISYVHEGSSXAAITTHYRQRGAHNFIAHEMENPIKLTY 201
           P +Y S + EG S    T   R  GAHN+I   ++  ++  Y
Sbjct: 212 PLRYNSIIVEGDSRTGKTMWARSLGAHNYITGHLDFSLRTYY 253



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>SMR3A_HUMAN (Q99954) Submaxillary gland androgen-regulated protein 3 homolog A|
           precursor (Proline-rich protein 5) (Proline-rich protein
           PBI)
          Length = 134

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 18/34 (52%), Positives = 18/34 (52%)
 Frame = -1

Query: 444 PTGGGRIPPYPAPLRRAQVPARAQHHRGSLPP*Y 343
           P G GRIPP P P      P R Q H  SLPP Y
Sbjct: 70  PYGPGRIPPSPPP---PYGPGRIQSH--SLPPPY 98



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>AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 180

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 554 ASFGGANIDPAAWEDKKCNGESRFPAQVRVATRKICDPLEEDAFRPILHHYDGPKFRLEL 375
           A+ GG  +DP   E+++C  E  F   +++      + L  D +RP+L   D  +   +L
Sbjct: 79  ATGGGTILDP---ENRRCMQERGFVVFLKINVNTQLERLAHDRYRPLLQQIDRKQVLSDL 135

Query: 374 SIT 366
             T
Sbjct: 136 YAT 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,378,448
Number of Sequences: 219361
Number of extensions: 1622545
Number of successful extensions: 4256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4254
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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