ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23m02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A03, full insert sequence Length = 1418 Score = 353 bits (178), Expect = 4e-94 Identities = 262/290 (90%) Strand = Plus / Minus Query: 325 tcatccttgtcttcaaatatatcaaggagggagagagcctcggtgatgctgagctcgagc 384 |||||||||||| |||| || ||||| |||||||| ||||||| || ||||||||| ||| Sbjct: 1047 tcatccttgtctgcaaagatgtcaagaagggagagcgcctcggcgacgctgagctccagc 988 Query: 385 cggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctcctccagtggg 444 | ||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| ||| Sbjct: 987 ctgaacttggggccgtcgtagtggtggaggatcggccggaaggcgtcctcctccagcggg 928 Query: 445 tcgcagatcttccttgtggccaccctcacctgtgcagggaagcgggactcgccgttgcac 504 || |||||||||| || || ||| ||||||||||||||||||| ||||||||| |||| Sbjct: 927 tcatagatcttcctcgtcgcaaccttcacctgtgcagggaagcgcgactcgccggggcac 868 Query: 505 ttcttgtcctcccacgccgccgggtcgatgtttgctccgccaaagctcgcggcctcgaag 564 ||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||| Sbjct: 867 ttcttgtcctcccacgccgtcggatcgatgtttgttccgccaaagctcgcagcctcgaag 808 Query: 565 atgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 614 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 atgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 758
>dbj|AK106151.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H09, full insert sequence Length = 1489 Score = 353 bits (178), Expect = 4e-94 Identities = 262/290 (90%) Strand = Plus / Minus Query: 325 tcatccttgtcttcaaatatatcaaggagggagagagcctcggtgatgctgagctcgagc 384 |||||||||||| |||| || ||||| |||||||| ||||||| || ||||||||| ||| Sbjct: 1119 tcatccttgtctgcaaagatgtcaagaagggagagcgcctcggcgacgctgagctccagc 1060 Query: 385 cggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctcctccagtggg 444 | ||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| ||| Sbjct: 1059 ctgaacttggggccgtcgtagtggtggaggatcggccggaaggcgtcctcctccagcggg 1000 Query: 445 tcgcagatcttccttgtggccaccctcacctgtgcagggaagcgggactcgccgttgcac 504 || |||||||||| || || ||| ||||||||||||||||||| ||||||||| |||| Sbjct: 999 tcatagatcttcctcgtcgcaaccttcacctgtgcagggaagcgcgactcgccggggcac 940 Query: 505 ttcttgtcctcccacgccgccgggtcgatgtttgctccgccaaagctcgcggcctcgaag 564 ||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||| Sbjct: 939 ttcttgtcctcccacgccgtcggatcgatgtttgttccgccaaagctcgcagcctcgaag 880 Query: 565 atgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 614 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 atgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 830
>dbj|AK067529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108E24, full insert sequence Length = 1622 Score = 353 bits (178), Expect = 4e-94 Identities = 262/290 (90%) Strand = Plus / Minus Query: 325 tcatccttgtcttcaaatatatcaaggagggagagagcctcggtgatgctgagctcgagc 384 |||||||||||| |||| || ||||| |||||||| ||||||| || ||||||||| ||| Sbjct: 1120 tcatccttgtctgcaaagatgtcaagaagggagagcgcctcggcgacgctgagctccagc 1061 Query: 385 cggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctcctccagtggg 444 | ||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| ||| Sbjct: 1060 ctgaacttggggccgtcgtagtggtggaggatcggccggaaggcgtcctcctccagcggg 1001 Query: 445 tcgcagatcttccttgtggccaccctcacctgtgcagggaagcgggactcgccgttgcac 504 || |||||||||| || || ||| ||||||||||||||||||| ||||||||| |||| Sbjct: 1000 tcatagatcttcctcgtcgcaaccttcacctgtgcagggaagcgcgactcgccggggcac 941 Query: 505 ttcttgtcctcccacgccgccgggtcgatgtttgctccgccaaagctcgcggcctcgaag 564 ||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||| Sbjct: 940 ttcttgtcctcccacgccgtcggatcgatgtttgttccgccaaagctcgcagcctcgaag 881 Query: 565 atgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 614 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 atgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 831
>gb|AY104341.1| Zea mays PCO142367 mRNA sequence Length = 1295 Score = 331 bits (167), Expect = 2e-87 Identities = 239/263 (90%) Strand = Plus / Minus Query: 349 aggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtgg 408 ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 876 aggagggcgagggcctcggtgacggagagctcgagccggaacttgggcccgtcgtagtgg 817 Query: 409 tgcaggatagggcggaatgcgtcctcctccagtgggtcgcagatcttccttgtggccacc 468 |||||||| |||||||| |||||||||||||| |||||| ||||||||| || |||||| Sbjct: 816 tgcaggatggggcggaaggcgtcctcctccagcgggtcgtagatcttccgcgttgccacc 757 Query: 469 ctcacctgtgcagggaagcgggactcgccgttgcacttcttgtcctcccacgccgccggg 528 | |||||| ||||| ||||| ||||||||| ||||||||||||||||||||||| |||| Sbjct: 756 cgcacctgcgcaggaaagcgcgactcgccggggcacttcttgtcctcccacgccgtcggg 697 Query: 529 tcgatgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggag 588 |||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 696 tcgatgttggtcccgccgaagctcgcggcctcgaagatgccgtggagctggtgcgtggag 637 Query: 589 tagttgtagaggaagaggggcag 611 ||||||||||||||||||||||| Sbjct: 636 tagttgtagaggaagaggggcag 614
>ref|NM_193396.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 317 bits (160), Expect = 2e-83 Identities = 229/252 (90%) Strand = Plus / Minus Query: 363 ctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcg 422 ||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || || Sbjct: 1014 ctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggccg 955 Query: 423 gaatgcgtcctcctccagtgggtcgcagatcttccttgtggccaccctcacctgtgcagg 482 ||| |||||||||||||| ||||| |||||||||| || || ||| ||||||||||||| Sbjct: 954 gaaggcgtcctcctccagcgggtcatagatcttcctcgtcgcaaccttcacctgtgcagg 895 Query: 483 gaagcgggactcgccgttgcacttcttgtcctcccacgccgccgggtcgatgtttgctcc 542 |||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||| ||| Sbjct: 894 gaagcgcgactcgccggggcacttcttgtcctcccacgccgtcggatcgatgtttgttcc 835 Query: 543 gccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtagttgtagaggaa 602 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 834 gccaaagctcgcagcctcgaagatgccgtggagctggtgggtggagtagttgtagaggaa 775 Query: 603 gaggggcagccc 614 |||||||||||| Sbjct: 774 gaggggcagccc 763
>gb|AY109212.1| Zea mays PCO142361 mRNA sequence Length = 562 Score = 208 bits (105), Expect = 2e-50 Identities = 165/185 (89%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 260 gagctcgagccgaaacttgggcccgtcgtagtggtgaaggatggggcggaaggcgtcctc 201 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctgtgcagggaagcgggactc 494 ||||||||| ||| ||||||||| || ||||| | |||||||||||||||||| ||||| Sbjct: 200 ctccagtggatcgtagatcttccgcgttgccactcgcacctgtgcagggaagcgcgactc 141 Query: 495 gccgttgcacttcttgtcctcccacgccgccgggtcgatgtttgctccgccaaagctcgc 554 |||| ||||||||||||||||||||||| |||||||||||| | ||||| ||||| || Sbjct: 140 gccggggcacttcttgtcctcccacgccgtcgggtcgatgttggtcccgccgaagctggc 81 Query: 555 ggcct 559 ||||| Sbjct: 80 ggcct 76
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 170 bits (86), Expect = 3e-39 Identities = 222/264 (84%), Gaps = 5/264 (1%) Strand = Plus / Plus Query: 346 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 405 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 12804 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 12863 Query: 406 tggtgcaggatagggcggaatgcgtcctcctccagtgggtcgcagatcttccttgtggcc 465 |||||||| | || | ||| |||||||||||||| || || |||||||| | |||||| Sbjct: 12864 tggtgcagcacgggcctgaaggcgtcctcctccagcggctcacagatcttgcgcgtggcc 12923 Query: 466 accctcacctgtgcagggaagcgggactcgccgttg---cacttcttgtcctcccacgcc 522 |||| ||||| || ||||| | |||||||||| | ||||| |||||||||| || Sbjct: 12924 acccgaacctgcgctgggaacctggactcgccgccggggcacttgctgtcctcccaagc- 12982 Query: 523 gccggg-tcgatgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtg 581 |||||| |||||||| | |||||| ||||| | |||||||||||||||||| |||||||| Sbjct: 12983 gccgggatcgatgttggatccgccgaagctggtggcctcgaagatgccgtgaagctggtg 13042 Query: 582 ggtggagtagttgtagaggaagag 605 |||||||||||||||||||||||| Sbjct: 13043 ggtggagtagttgtagaggaagag 13066
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 170 bits (86), Expect = 3e-39 Identities = 222/264 (84%), Gaps = 5/264 (1%) Strand = Plus / Minus Query: 346 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 405 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 28486 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 28427 Query: 406 tggtgcaggatagggcggaatgcgtcctcctccagtgggtcgcagatcttccttgtggcc 465 |||||||| | || | ||| |||||||||||||| || || |||||||| | |||||| Sbjct: 28426 tggtgcagcacgggcctgaaggcgtcctcctccagcggctcacagatcttgcgcgtggcc 28367 Query: 466 accctcacctgtgcagggaagcgggactcgccgttg---cacttcttgtcctcccacgcc 522 |||| ||||| || ||||| | |||||||||| | ||||| |||||||||| || Sbjct: 28366 acccgaacctgcgctgggaacctggactcgccgccggggcacttgctgtcctcccaagc- 28308 Query: 523 gccggg-tcgatgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtg 581 |||||| |||||||| | |||||| ||||| | |||||||||||||||||| |||||||| Sbjct: 28307 gccgggatcgatgttggatccgccgaagctggtggcctcgaagatgccgtgaagctggtg 28248 Query: 582 ggtggagtagttgtagaggaagag 605 |||||||||||||||||||||||| Sbjct: 28247 ggtggagtagttgtagaggaagag 28224
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 170 bits (86), Expect = 3e-39 Identities = 222/264 (84%), Gaps = 5/264 (1%) Strand = Plus / Plus Query: 346 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 405 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 29364779 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 29364838 Query: 406 tggtgcaggatagggcggaatgcgtcctcctccagtgggtcgcagatcttccttgtggcc 465 |||||||| | || | ||| |||||||||||||| || || |||||||| | |||||| Sbjct: 29364839 tggtgcagcacgggcctgaaggcgtcctcctccagcggctcacagatcttgcgcgtggcc 29364898 Query: 466 accctcacctgtgcagggaagcgggactcgccgttg---cacttcttgtcctcccacgcc 522 |||| ||||| || ||||| | |||||||||| | ||||| |||||||||| || Sbjct: 29364899 acccgaacctgcgctgggaacctggactcgccgccggggcacttgctgtcctcccaagc- 29364957 Query: 523 gccggg-tcgatgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtg 581 |||||| |||||||| | |||||| ||||| | |||||||||||||||||| |||||||| Sbjct: 29364958 gccgggatcgatgttggatccgccgaagctggtggcctcgaagatgccgtgaagctggtg 29365017 Query: 582 ggtggagtagttgtagaggaagag 605 |||||||||||||||||||||||| Sbjct: 29365018 ggtggagtagttgtagaggaagag 29365041
>dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F10, full insert sequence Length = 1306 Score = 170 bits (86), Expect = 3e-39 Identities = 222/264 (84%), Gaps = 5/264 (1%) Strand = Plus / Minus Query: 346 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 405 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 1038 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 979 Query: 406 tggtgcaggatagggcggaatgcgtcctcctccagtgggtcgcagatcttccttgtggcc 465 |||||||| | || | ||| |||||||||||||| || || |||||||| | |||||| Sbjct: 978 tggtgcagcacgggcctgaaggcgtcctcctccagcggctcacagatcttgcgcgtggcc 919 Query: 466 accctcacctgtgcagggaagcgggactcgccgttg---cacttcttgtcctcccacgcc 522 |||| ||||| || ||||| | |||||||||| | ||||| |||||||||| || Sbjct: 918 acccgaacctgcgctgggaacctggactcgccgccggggcacttgctgtcctcccaagc- 860 Query: 523 gccggg-tcgatgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtg 581 |||||| |||||||| | |||||| ||||| | |||||||||||||||||| |||||||| Sbjct: 859 gccgggatcgatgttggatccgccgaagctggtggcctcgaagatgccgtgaagctggtg 800 Query: 582 ggtggagtagttgtagaggaagag 605 |||||||||||||||||||||||| Sbjct: 799 ggtggagtagttgtagaggaagag 776
>dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G03, full insert sequence Length = 1187 Score = 170 bits (86), Expect = 3e-39 Identities = 222/264 (84%), Gaps = 5/264 (1%) Strand = Plus / Minus Query: 346 tcaaggagggagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtag 405 ||||| ||||| || ||||||| || | |||||||||| ||||||||||| ||||||||| Sbjct: 918 tcaagaagggatagggcctcggcgacggtgagctcgaggcggaacttggggccgtcgtag 859 Query: 406 tggtgcaggatagggcggaatgcgtcctcctccagtgggtcgcagatcttccttgtggcc 465 |||||||| | || | ||| |||||||||||||| || || |||||||| | |||||| Sbjct: 858 tggtgcagcacgggcctgaaggcgtcctcctccagcggctcacagatcttgcgcgtggcc 799 Query: 466 accctcacctgtgcagggaagcgggactcgccgttg---cacttcttgtcctcccacgcc 522 |||| ||||| || ||||| | |||||||||| | ||||| |||||||||| || Sbjct: 798 acccgaacctgcgctgggaacctggactcgccgccggggcacttgctgtcctcccaagc- 740 Query: 523 gccggg-tcgatgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtg 581 |||||| |||||||| | |||||| ||||| | |||||||||||||||||| |||||||| Sbjct: 739 gccgggatcgatgttggatccgccgaagctggtggcctcgaagatgccgtgaagctggtg 680 Query: 582 ggtggagtagttgtagaggaagag 605 |||||||||||||||||||||||| Sbjct: 679 ggtggagtagttgtagaggaagag 656
>gb|DQ427338.1| Sorghum bicolor voucher PI152702 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||||| |||||| ||||||||| || ||||||| |||||| Sbjct: 590 ctccagggggtcgtagatcttccgcgttgccacccgcacctg 549
>gb|DQ427334.1| Sorghum bicolor voucher NSL77034 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||||| |||||| ||||||||| || ||||||| |||||| Sbjct: 590 ctccagggggtcgtagatcttccgcgttgccacccgcacctg 549
>gb|DQ427333.1| Sorghum bicolor voucher NSL56174 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||||| |||||| ||||||||| || ||||||| |||||| Sbjct: 590 ctccagggggtcgtagatcttccgcgttgccacccgcacctg 549
>gb|DQ427332.1| Sorghum bicolor voucher NSL56003 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||||| |||||| ||||||||| || ||||||| |||||| Sbjct: 590 ctccagggggtcgtagatcttccgcgttgccacccgcacctg 549
>gb|DQ427330.1| Sorghum bicolor voucher NSL51365 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||||| |||||| ||||||||| || ||||||| |||||| Sbjct: 590 ctccagggggtcgtagatcttccgcgttgccacccgcacctg 549
>gb|DQ427327.1| Sorghum bicolor voucher BTx623 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||||| |||||| ||||||||| || ||||||| |||||| Sbjct: 590 ctccagggggtcgtagatcttccgcgttgccacccgcacctg 549
>gb|DQ427343.1| Sorghum propinquum locus CDSC56 genomic sequence Length = 658 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 650 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 591 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 590 ctccagggggtcgtagatcttcc 568
>gb|DQ427342.1| Sorghum bicolor voucher PI585454 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 600 ctccagggggtcgtagatcttcc 578
>gb|DQ427341.1| Sorghum bicolor voucher PI267539 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 600 ctccagggggtcgtagatcttcc 578
>gb|DQ427340.1| Sorghum bicolor voucher PI267408 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 600 ctccagggggtcgtagatcttcc 578
>gb|DQ427339.1| Sorghum bicolor voucher PI221607 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 600 ctccagggggtcgtagatcttcc 578
>gb|DQ427337.1| Sorghum bicolor voucher NSL92371 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 600 ctccagggggtcgtagatcttcc 578
>gb|DQ427336.1| Sorghum bicolor voucher NSL87902 locus CDSC56 genomic sequence Length = 651 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 643 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 584 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 583 ctccagggggtcgtagatcttcc 561
>gb|DQ427335.1| Sorghum bicolor voucher NSL77217 locus CDSC56 genomic sequence Length = 875 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 867 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 808 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 807 ctccagggggtcgtagatcttcc 785
>gb|DQ427329.1| Sorghum bicolor voucher NSL51030 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 600 ctccagggggtcgtagatcttcc 578
>gb|DQ427328.1| Sorghum bicolor voucher NSL50875 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 660 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 601 Query: 435 ctccagtgggtcgcagatcttcc 457 |||||| |||||| ||||||||| Sbjct: 600 ctccagggggtcgtagatcttcc 578
>gb|DQ427331.1| Sorghum bicolor voucher NSL55243 locus CDSC56 genomic sequence Length = 879 Score = 123 bits (62), Expect = 7e-25 Identities = 92/102 (90%) Strand = Plus / Minus Query: 375 gagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctc 434 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 871 gagctcgagccggaacttgggcccgtcgtagtggtggaggatggggcggaaggcgtcctc 812 Query: 435 ctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||||| |||||| ||||||| | || ||||||| |||||| Sbjct: 811 ctccagggggtcgtagatctttcgcgttgccacccgcacctg 770
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 472 acctgtgcagggaagcgggactcgccgttgcacttcttgtcctcccacgccgccgggtcg 531 ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| Sbjct: 20596899 acctgtgcagggaagcgcgactcgccggggcacttcttgtcctcccacgccgtcggatcg 20596958 Query: 532 atgtttgctccgccaaagctcgcggcct 559 ||||||| ||||||||||||||| |||| Sbjct: 20596959 atgtttgttccgccaaagctcgcagcct 20596986 Score = 115 bits (58), Expect = 2e-22 Identities = 58/58 (100%) Strand = Plus / Plus Query: 557 cctcgaagatgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20597349 cctcgaagatgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 20597406 Score = 101 bits (51), Expect = 3e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 362 cctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggc 421 |||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || | Sbjct: 20596110 cctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggcc 20596169 Query: 422 ggaatgcgtcctcctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||| |||||||||||||| ||||| |||||||||| || || ||| ||||||| Sbjct: 20596170 ggaaggcgtcctcctccagcgggtcatagatcttcctcgtcgcaaccttcacctg 20596224 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 325 tcatccttgtcttcaaatatatcaaggagggagagagcct 364 |||||||||||| |||| || ||||| |||||||| |||| Sbjct: 20595926 tcatccttgtctgcaaagatgtcaagaagggagagcgcct 20595965
>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24 Length = 172642 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 472 acctgtgcagggaagcgggactcgccgttgcacttcttgtcctcccacgccgccgggtcg 531 ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| Sbjct: 58875 acctgtgcagggaagcgcgactcgccggggcacttcttgtcctcccacgccgtcggatcg 58934 Query: 532 atgtttgctccgccaaagctcgcggcct 559 ||||||| ||||||||||||||| |||| Sbjct: 58935 atgtttgttccgccaaagctcgcagcct 58962 Score = 115 bits (58), Expect = 2e-22 Identities = 58/58 (100%) Strand = Plus / Plus Query: 557 cctcgaagatgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59325 cctcgaagatgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 59382 Score = 101 bits (51), Expect = 3e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 362 cctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggc 421 |||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || | Sbjct: 58086 cctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggcc 58145 Query: 422 ggaatgcgtcctcctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||| |||||||||||||| ||||| |||||||||| || || ||| ||||||| Sbjct: 58146 ggaaggcgtcctcctccagcgggtcatagatcttcctcgtcgcaaccttcacctg 58200 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 325 tcatccttgtcttcaaatatatcaaggagggagagagcct 364 |||||||||||| |||| || ||||| |||||||| |||| Sbjct: 57902 tcatccttgtctgcaaagatgtcaagaagggagagcgcct 57941
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1156H12 Length = 159509 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 472 acctgtgcagggaagcgggactcgccgttgcacttcttgtcctcccacgccgccgggtcg 531 ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| Sbjct: 120721 acctgtgcagggaagcgcgactcgccggggcacttcttgtcctcccacgccgtcggatcg 120780 Query: 532 atgtttgctccgccaaagctcgcggcct 559 ||||||| ||||||||||||||| |||| Sbjct: 120781 atgtttgttccgccaaagctcgcagcct 120808 Score = 115 bits (58), Expect = 2e-22 Identities = 58/58 (100%) Strand = Plus / Plus Query: 557 cctcgaagatgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121171 cctcgaagatgccgtggagctggtgggtggagtagttgtagaggaagaggggcagccc 121228 Score = 101 bits (51), Expect = 3e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 362 cctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcaggatagggc 421 |||||| || ||||||||| |||| ||||||||| |||||||||||||| ||||| || | Sbjct: 119932 cctcggcgacgctgagctccagcctgaacttggggccgtcgtagtggtggaggatcggcc 119991 Query: 422 ggaatgcgtcctcctccagtgggtcgcagatcttccttgtggccaccctcacctg 476 |||| |||||||||||||| ||||| |||||||||| || || ||| ||||||| Sbjct: 119992 ggaaggcgtcctcctccagcgggtcatagatcttcctcgtcgcaaccttcacctg 120046 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 325 tcatccttgtcttcaaatatatcaaggagggagagagcct 364 |||||||||||| |||| || ||||| |||||||| |||| Sbjct: 119748 tcatccttgtctgcaaagatgtcaagaagggagagcgcct 119787
>emb|X72385.1|DCB2P D.carota mRNA for B2 protein Length = 935 Score = 58.0 bits (29), Expect = 4e-05 Identities = 191/245 (77%) Strand = Plus / Minus Query: 355 gagagagcctcggtgatgctgagctcgagccggaacttgggcccgtcgtagtggtgcagg 414 |||| |||||||| |||| ||||||| || |||||||| || || ||||||||||| || Sbjct: 613 gagatagcctcggggatgttgagctccaggcggaacttaggaccatcgtagtggtggaga 554 Query: 415 atagggcggaatgcgtcctcctccagtgggtcgcagatcttccttgtggccaccctcacc 474 || || | ||||| ||||| || ||||| || || || || ||||| || | ||| Sbjct: 553 attggcctgaatgaatcctcttcgagtggttcacaaatttttcttgtcattacacgaacc 494 Query: 475 tgtgcagggaagcgggactcgccgttgcacttcttgtcctcccacgccgccgggtcgatg 534 || |||||||||||||| || || | | ||||||||||||||| || | || || ||| Sbjct: 493 tgagcagggaagcgggattctccttggttcttcttgtcctcccaagcagtgggatcaatg 434 Query: 535 tttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtagttg 594 |||| ||| |||||||| || ||||| || | || || |||||||| |||||||| ||| Sbjct: 433 tttgttcctccaaagcttgcagcctcaaaaacaccatgtagctggtgagtggagtaattg 374 Query: 595 tagag 599 ||||| Sbjct: 373 tagag 369
>emb|AJ875407.1| Glycine max mRNA for N-rich protein (nrp gene) Length = 1450 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 501 gcacttcttgtcctcccacgccgccgggtcgatgtttgctccgccaaagctcgcggcctc 560 |||||||||||||||||| |||| || || || || | ||| ||||| || || ||||| Sbjct: 961 gcacttcttgtcctcccaagccgttggatcaatattggatcctccaaaacttgcagcctc 902 Query: 561 gaagatgccgtggagctggtgggtggagtagttgta 596 ||||| || ||||| ||||| |||||||||||||| Sbjct: 901 aaagataccatggagttggtgagtggagtagttgta 866
>gb|AC113106.9| Mus musculus chromosome 9, clone RP23-325C1, complete sequence Length = 191609 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 227 taaatcgtatgtatgtatgtatact 251 ||||||||||||||||||||||||| Sbjct: 49985 taaatcgtatgtatgtatgtatact 49961
>gb|AC113127.6| Mus musculus chromosome 9, clone RP23-352H13, complete sequence Length = 185801 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 227 taaatcgtatgtatgtatgtatact 251 ||||||||||||||||||||||||| Sbjct: 24053 taaatcgtatgtatgtatgtatact 24077
>ref|NM_123570.2| Arabidopsis thaliana unknown protein AT5G42050 mRNA, complete cds Length = 1552 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 373 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 412 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 1139 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 1100 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 532 atgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtag 591 ||||||| ||| || ||||| || |||||| |||| || || || ||||| ||||||||| Sbjct: 980 atgtttgttcctccgaagctagctgcctcgtagattccatgaagttggtgagtggagtag 921 Query: 592 ttgta 596 ||||| Sbjct: 920 ttgta 916
>gb|BT013344.1| Lycopersicon esculentum clone 135280R, mRNA sequence Length = 1475 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Minus Query: 547 aagctcgcggcctcgaagatgccgtggagctggtgggtggagtagttgtagaggaa 602 ||||| || ||||| || || ||||| |||||||| || ||||||||||||||||| Sbjct: 1077 aagcttgcagcctcaaaaattccgtgaagctggtgagttgagtagttgtagaggaa 1022
>gb|AY114057.1| Arabidopsis thaliana unknown protein (At5g42050) mRNA, complete cds Length = 1081 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 373 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 412 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 998 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 959 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 532 atgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtag 591 ||||||| ||| || ||||| || |||||| |||| || || || ||||| ||||||||| Sbjct: 839 atgtttgttcctccgaagctagctgcctcgtagattccatgaagttggtgagtggagtag 780 Query: 592 ttgta 596 ||||| Sbjct: 779 ttgta 775
>gb|AY080773.1| Arabidopsis thaliana unknown protein (At5g42050) mRNA, complete cds Length = 1497 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 373 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 412 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 1108 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 1069 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 532 atgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtag 591 ||||||| ||| || ||||| || |||||| |||| || || || ||||| ||||||||| Sbjct: 949 atgtttgttcctccgaagctagctgcctcgtagattccatgaagttggtgagtggagtag 890 Query: 592 ttgta 596 ||||| Sbjct: 889 ttgta 885
>gb|AY088465.1| Arabidopsis thaliana clone 6903 mRNA, complete sequence Length = 1513 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 373 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 412 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 1140 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 1101 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 532 atgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtag 591 ||||||| ||| || ||||| || |||||| |||| || || || ||||| ||||||||| Sbjct: 981 atgtttgttcctccgaagctagctgcctcgtagattccatgaagttggtgagtggagtag 922 Query: 592 ttgta 596 ||||| Sbjct: 921 ttgta 917
>dbj|AB017067.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20 Length = 83689 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 373 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 412 ||||| ||||| |||||||| || |||||||||||||||| Sbjct: 39029 ctgagttcgagtcggaacttaggaccgtcgtagtggtgca 38990 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 532 atgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtag 591 ||||||| ||| || ||||| || |||||| |||| || || || ||||| ||||||||| Sbjct: 38781 atgtttgttcctccgaagctagctgcctcgtagattccatgaagttggtgagtggagtag 38722 Query: 592 ttgta 596 ||||| Sbjct: 38721 ttgta 38717
>gb|BT014106.1| Lycopersicon esculentum clone 133210F, mRNA sequence Length = 1420 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Minus Query: 504 cttcttgtcctcccacgccgccgggtcgatgtttgctccgccaaagctcgcggcctcgaa 563 ||||||||||||||| |||| || || || |||| || |||||||| || ||||| || Sbjct: 1038 cttcttgtcctcccaggccgatggatcaatatttgacccaccaaagcttgcagcctcaaa 979 Query: 564 gatgccgtggagctggtgggtggagtagttgtagaggaagaggggca 610 | ||||| ||||| ||||| ||||||||||| || ||||| |||| Sbjct: 978 aactccgtgaagctgatgggttgagtagttgtacagaaagagaggca 932
>emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, complete sequence Length = 171724 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 226 ataaatcgtatgtatgtatgtat 248 ||||||||||||||||||||||| Sbjct: 1250 ataaatcgtatgtatgtatgtat 1228
>gb|AF421468.1| Canis familiaris clone INU032 genomic sequence Length = 557 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 170 atgagatggaaaacccaataaag 192 ||||||||||||||||||||||| Sbjct: 149 atgagatggaaaacccaataaag 127
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 233 gtatgtatgtatgtatactccag 255 ||||||||||||||||||||||| Sbjct: 457912 gtatgtatgtatgtatactccag 457890 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 tcaatagtattatacatacat 73 ||||||||||||||||||||| Sbjct: 1442767 tcaatagtattatacatacat 1442787 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 atcaccattaattgataatg 223 |||||||||||||||||||| Sbjct: 19904579 atcaccattaattgataatg 19904560
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 233 gtatgtatgtatgtatactccag 255 ||||||||||||||||||||||| Sbjct: 457912 gtatgtatgtatgtatactccag 457890 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 tcaatagtattatacatacat 73 ||||||||||||||||||||| Sbjct: 1442767 tcaatagtattatacatacat 1442787 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 atcaccattaattgataatg 223 |||||||||||||||||||| Sbjct: 19830793 atcaccattaattgataatg 19830774
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactccag 255 ||||||||||||||||||||||| Sbjct: 88860 gtatgtatgtatgtatactccag 88882
>emb|CR933529.9| Zebrafish DNA sequence from clone DKEY-206N17 in linkage group 8, complete sequence Length = 59760 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 taaatcgtatgtatgtatgtat 248 |||||||||||||||||||||| Sbjct: 5907 taaatcgtatgtatgtatgtat 5928
>gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, complete sequence Length = 180944 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 312 ccttcatcatgcatcatccttg 333 |||||||||||||||||||||| Sbjct: 110686 ccttcatcatgcatcatccttg 110707
>dbj|AK057529.1| Homo sapiens cDNA FLJ32967 fis, clone TESTI2008715 Length = 1857 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 ccttcatcatgcatcatccttg 333 |||||||||||||||||||||| Sbjct: 126 ccttcatcatgcatcatccttg 105
>dbj|AK057331.1| Homo sapiens cDNA FLJ32769 fis, clone TESTI2001894 Length = 1737 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 ccttcatcatgcatcatccttg 333 |||||||||||||||||||||| Sbjct: 1521 ccttcatcatgcatcatccttg 1500
>emb|BX294375.7| Zebrafish DNA sequence from clone DKEY-176M20 in linkage group 17, complete sequence Length = 188455 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 224 atataaatcgtatgtatgtatgtata 249 |||||||| ||||||||||||||||| Sbjct: 14700 atataaattgtatgtatgtatgtata 14675
>gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, complete sequence Length = 174559 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 348 aaggagggagagagcctcggtg 369 |||||||||||||||||||||| Sbjct: 66305 aaggagggagagagcctcggtg 66284
>dbj|AB056450.1| Vigna unguiculata CPRD48 mRNA, partial cds Length = 646 Score = 44.1 bits (22), Expect = 0.54 Identities = 79/98 (80%) Strand = Plus / Minus Query: 388 aacttgggcccgtcgtagtggtgcaggatagggcggaatgcgtcctcctccagtgggtcg 447 |||||||| || || |||||||| ||||| || | ||| | ||||||||||||||| || Sbjct: 120 aacttgggaccatcatagtggtgaaggattggtctgaaggagtcctcctccagtggttca 61 Query: 448 cagatcttccttgtggccaccctcacctgtgcagggaa 485 || | |||||||| ||| |||||||| |||||||| Sbjct: 60 catgttttccttgtaatcactctcacctgagcagggaa 23
>ref|NM_116890.1| Arabidopsis thaliana unknown protein AT4G08210 mRNA, complete cds Length = 2061 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 gatggaaaacccaataaagct 194 ||||||||||||||||||||| Sbjct: 250 gatggaaaacccaataaagct 270
>gb|AC091473.2| Mus musculus chromosome X clones RP21-114F21, RP21-430D6 complete sequence Length = 221860 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 agaaacatcttaaagtctcaa 56 ||||||||||||||||||||| Sbjct: 97723 agaaacatcttaaagtctcaa 97743
>gb|M12389.2|MUSIGHANB Mus musculus immunoglobulin heavy chain gamma-1 switch region Length = 9235 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 587 agtagttgtagaggaagaggggcag 611 |||||||||||||||| |||||||| Sbjct: 8622 agtagttgtagaggaacaggggcag 8646
>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence Length = 162162 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 aaatcgtatgtatgtatgtat 248 ||||||||||||||||||||| Sbjct: 10807 aaatcgtatgtatgtatgtat 10827
>gb|AC125133.2| Mus musculus BAC clone RP24-316A22 from chromosome 18, complete sequence Length = 175583 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 224 atataaatcgtatgtatgtatgtat 248 |||||||| |||||||||||||||| Sbjct: 121036 atataaattgtatgtatgtatgtat 121012
>gb|AC124693.4| Mus musculus BAC clone RP24-167O14 from chromosome 19, complete sequence Length = 160363 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 aaatcgtatgtatgtatgtat 248 ||||||||||||||||||||| Sbjct: 149569 aaatcgtatgtatgtatgtat 149589
>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence Length = 222845 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcca 254 ||||||||||||||||||||| Sbjct: 104314 tatgtatgtatgtatactcca 104294
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 aatcgtatgtatgtatgtata 249 ||||||||||||||||||||| Sbjct: 99352 aatcgtatgtatgtatgtata 99332 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcc 253 |||||||||||||||||||| Sbjct: 192564 tatgtatgtatgtatactcc 192545
>emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22 Length = 198131 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 gatggaaaacccaataaagct 194 ||||||||||||||||||||| Sbjct: 152559 gatggaaaacccaataaagct 152539
>emb|AL080252.2|ATT12G13 Arabidopsis thaliana DNA chromosome 4, BAC clone T12G13, partial sequence (ESSA project) Length = 91226 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 gatggaaaacccaataaagct 194 ||||||||||||||||||||| Sbjct: 23656 gatggaaaacccaataaagct 23636
>emb|BX072572.8| Zebrafish DNA sequence from clone CH211-119A17, complete sequence Length = 173988 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 tataaatcgtatgtatgtatgtata 249 |||||| |||||||||||||||||| Sbjct: 62850 tataaaccgtatgtatgtatgtata 62874
>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence Length = 184396 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 cgtatgtatgtatgtatactc 252 ||||||||||||||||||||| Sbjct: 55285 cgtatgtatgtatgtatactc 55265
>gb|AC177797.3| Mus musculus BAC clone RP24-558G11 from chromosome y, complete sequence Length = 174066 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 aatcgtatgtatgtatgtata 249 ||||||||||||||||||||| Sbjct: 60464 aatcgtatgtatgtatgtata 60444
>gb|AC067796.11| Homo sapiens chromosome 18, clone RP11-609K12, complete sequence Length = 201861 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 cgtatgtatgtatgtatactc 252 ||||||||||||||||||||| Sbjct: 199302 cgtatgtatgtatgtatactc 199282
>dbj|AK156919.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830107I15 product:unclassifiable, full insert sequence Length = 3926 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcca 254 ||||||||||||||||||||| Sbjct: 3539 tatgtatgtatgtatactcca 3519
>gb|AF321856.1|AF321856 Lolium rigidum clone FHH-t putative cytochrome P450 mRNA, complete cds Length = 1775 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gtcctcccacgccgccgggtc 530 ||||||||||||||||||||| Sbjct: 1303 gtcctcccacgccgccgggtc 1283
>gb|AF321855.1|AF321855 Lolium rigidum clone FHH-v putative cytochrome P450 mRNA, complete cds Length = 1795 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 gtcctcccacgccgccgggtc 530 ||||||||||||||||||||| Sbjct: 1303 gtcctcccacgccgccgggtc 1283
>gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome 14, complete sequence Length = 197373 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aaacatcttaaagtctcaata 58 ||||||||||||||||||||| Sbjct: 118531 aaacatcttaaagtctcaata 118511
>emb|BX833882.1|CNS09Z8S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 802 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 532 atgtttgctccgccaaagctcgcggcctcgaagatgccgtggagctggtgggtggagtag 591 ||||||| ||| || |||||||| |||||| |||| || || || |||| ||||||||| Sbjct: 271 atgtttgttcctccgaagctcgctgcctcgtagattccatgaagttggtcagtggagtag 212 Query: 592 ttgta 596 ||||| Sbjct: 211 ttgta 207 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 373 ctgagctcgagccggaacttgggcccgtcgtagtggtgca 412 ||||| ||||| ||||||| || |||||||||||||||| Sbjct: 430 ctgagttcgagtcggaactgaggaccgtcgtagtggtgca 391
>gb|AY074448.1| Trichosurus vulpecula clone TrvuVL12 immunoglobulin lambda light chain variable region mRNA, partial cds Length = 455 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gccaccctcacctgtgcaggg 483 ||||||||||||||||||||| Sbjct: 154 gccaccctcacctgtgcaggg 174
>dbj|D78344.1| Mus musculus DNA, gamma gene loci of immunoglobulin heavy chains Length = 59641 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 587 agtagttgtagaggaagaggggcag 611 |||||||||||||||| |||||||| Sbjct: 8364 agtagttgtagaggaacaggggcag 8388
>emb|AL929507.37| Zebrafish DNA sequence from clone DKEY-7C18 in linkage group 20, complete sequence Length = 214404 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 tataaatcgtatgtatgtatgtata 249 |||||| |||||||||||||||||| Sbjct: 191022 tataaaccgtatgtatgtatgtata 190998
>emb|AL928731.11| Mouse DNA sequence from clone RP23-171N20 on chromosome X, complete sequence Length = 114243 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 agaaacatcttaaagtctcaa 56 ||||||||||||||||||||| Sbjct: 71135 agaaacatcttaaagtctcaa 71155
>emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chromosome 4, complete sequence Length = 164883 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 cgtatgtatgtatgtatactc 252 ||||||||||||||||||||| Sbjct: 84329 cgtatgtatgtatgtatactc 84349
>emb|BX000558.5|CNS08CE5 Oryza sativa chromosome 12, . Partial sequence from BAC OJ1227_F03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 28516 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 tcaatagtattatacatacat 73 ||||||||||||||||||||| Sbjct: 23959 tcaatagtattatacatacat 23979
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 tcaatagtattatacatacat 73 ||||||||||||||||||||| Sbjct: 182965 tcaatagtattatacatacat 182945
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 587 agtagttgtagaggaagaggggcag 611 |||||||||||||||| |||||||| Sbjct: 1306783 agtagttgtagaggaacaggggcag 1306807
>ref|XM_635999.1| Dictyostelium discoideum hypothetical protein (DDB0206085), partial mRNA Length = 2658 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tatcaccattaattgataat 222 |||||||||||||||||||| Sbjct: 694 tatcaccattaattgataat 675
>gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome 7, complete sequence Length = 239149 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tatactccagtccatcttat 265 |||||||||||||||||||| Sbjct: 42267 tatactccagtccatcttat 42248
>ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcctcccacgccgccgggtc 530 |||||||||||||||||||| Sbjct: 1256 tcctcccacgccgccgggtc 1237
>gb|AC147568.5| Mus musculus chromosome 7 clone RP23-15J23, complete sequence Length = 211115 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 189275 gtatgtatgtatgtatactc 189256
>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence Length = 164298 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 120878 gtatgtatgtatgtatactc 120897
>gb|AC127171.54| Mus musculus strain C57BL/6J clone rp23-202i7 map 10, complete sequence Length = 194193 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 53020 gtatgtatgtatgtatactc 53001
>gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's Hospital Oakland Research Institute) complete sequence Length = 209654 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 142862 aatcgtatgtatgtatgtat 142843
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 tcgcggcctcgaagatgccg 570 |||||||||||||||||||| Sbjct: 406668 tcgcggcctcgaagatgccg 406687
>gb|AC118017.15| Mus musculus chromosome 7, clone RP23-457C1, complete sequence Length = 196427 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tcgtatgtatgtatgtatac 250 |||||||||||||||||||| Sbjct: 114182 tcgtatgtatgtatgtatac 114201
>gb|AC161289.2| Pan troglodytes BAC clone CH251-170B19 from chromosome 7, complete sequence Length = 151213 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 99612 aatcgtatgtatgtatgtat 99631
>gb|AC183672.2| Pan troglodytes BAC clone CH251-546K4 from chromosome 7, complete sequence Length = 231124 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 40321 aatcgtatgtatgtatgtat 40302
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcctcccacgccgccgggtc 530 |||||||||||||||||||| Sbjct: 31134980 tcctcccacgccgccgggtc 31134961
>gb|AC152938.3| Mus musculus BAC clone RP23-469O12 from chromosome 7, complete sequence Length = 183468 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tatactccagtccatcttat 265 |||||||||||||||||||| Sbjct: 173875 tatactccagtccatcttat 173856
>gb|AC163285.3| Mus musculus BAC clone RP23-379H2 from chromosome 16, complete sequence Length = 184951 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 caaatatatcaaggagggagagagcctc 365 |||||| ||| ||||||||||||||||| Sbjct: 82581 caaatagatccaggagggagagagcctc 82608
>gb|AC102125.13| Mus musculus chromosome 6, clone RP23-190E16, complete sequence Length = 219870 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 187048 gtatgtatgtatgtatactc 187067
>gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosome 1, complete sequence Length = 182261 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 115058 aatcgtatgtatgtatgtat 115039
>gb|AC121989.2| Mus musculus BAC clone RP24-298C8 from 7, complete sequence Length = 175515 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 77251 gtatgtatgtatgtatactc 77232
>gb|AC146024.3| Pan troglodytes BAC clone RP43-119C21 from 7, complete sequence Length = 139947 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 43653 aatcgtatgtatgtatgtat 43634
>ref|XM_948809.1| Theileria annulata strain Ankara DNA repair protein (TA06130) partial mRNA Length = 987 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 tggagtagttgtagaggaag 603 |||||||||||||||||||| Sbjct: 285 tggagtagttgtagaggaag 266
>gb|AC004935.1| Homo sapiens PAC clone RP5-953F6 from 7, complete sequence Length = 98935 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 565 atgccgtggagctggtgggtggag 588 |||||||||| ||||||||||||| Sbjct: 89536 atgccgtggacctggtgggtggag 89559
>emb|AL606526.10| Human DNA sequence from clone RP13-534F18 on chromosome 1, complete sequence Length = 113654 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 ataaatcgtatgtatgtatgtata 249 ||||||| |||||||||||||||| Sbjct: 49444 ataaatcatatgtatgtatgtata 49421
>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence Length = 221489 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 142814 gtatgtatgtatgtatactc 142795
>gb|AC084026.14| Homo sapiens chromosome 8, clone RP11-486M23, complete sequence Length = 185759 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 catgcatcatccttgtcttc 338 |||||||||||||||||||| Sbjct: 66349 catgcatcatccttgtcttc 66368
>gb|AC183922.3| Pan troglodytes BAC clone CH251-344F10 from chromosome unknown, complete sequence Length = 146184 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 127879 aatcgtatgtatgtatgtat 127860
>emb|CR352288.9| Zebrafish DNA sequence from clone CH211-123P18 in linkage group 16, complete sequence Length = 103979 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 65673 gtatgtatgtatgtatactc 65692
>emb|CR391924.9| Zebrafish DNA sequence from clone CH211-135F11 in linkage group 5, complete sequence Length = 142997 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 tggtgggtggagtagttgta 596 |||||||||||||||||||| Sbjct: 49780 tggtgggtggagtagttgta 49799
>gb|AC010941.6| Homo sapiens chromosome 8, clone RP11-115C6, complete sequence Length = 166129 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 agagagcctcggtgatgctgagct 379 ||||||||| |||||||||||||| Sbjct: 127175 agagagcctaggtgatgctgagct 127198
>gb|AC010036.6| Drosophila melanogaster 3L BAC RP98-7K20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 190369 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aatagtattatacatacata 74 |||||||||||||||||||| Sbjct: 148329 aatagtattatacatacata 148310
>gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequence Length = 34772 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcatccttgtcttcaaatat 344 |||||||||||||||||||| Sbjct: 34039 tcatccttgtcttcaaatat 34058
>gb|DQ397558.1| Cenarchaeum symbiosum clone C19H10, complete sequence Length = 43787 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tcatccttgtcttcaaatat 344 |||||||||||||||||||| Sbjct: 1525 tcatccttgtcttcaaatat 1544
>gb|AC093957.3| Drosophila melanogaster 3L BAC RP98-14E19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182212 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aatagtattatacatacata 74 |||||||||||||||||||| Sbjct: 160109 aatagtattatacatacata 160090
>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence Length = 120889 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tatgtatgtatgtatactcc 253 |||||||||||||||||||| Sbjct: 100243 tatgtatgtatgtatactcc 100262
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcctcccacgccgccgggtc 530 |||||||||||||||||||| Sbjct: 55621 tcctcccacgccgccgggtc 55602
>gb|AC134836.6| Mus musculus BAC clone RP24-323I5 from chromosome 6, complete sequence Length = 150705 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 12426 gtatgtatgtatgtatactc 12445
>gb|AC148988.5| Mus musculus BAC clone RP23-85B15 from chromosome 7, complete sequence Length = 154177 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tcgtatgtatgtatgtatac 250 |||||||||||||||||||| Sbjct: 132292 tcgtatgtatgtatgtatac 132273
>gb|AY533541.1| Ictalurus punctatus putative membrane progestin receptor beta mRNA, complete cds Length = 3487 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 593 tgtagaggaagaggggcagc 612 |||||||||||||||||||| Sbjct: 1065 tgtagaggaagaggggcagc 1046
>dbj|AK049512.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430018J02 product:unclassifiable, full insert sequence Length = 2357 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcc 253 |||||||||||||||||||| Sbjct: 1004 tatgtatgtatgtatactcc 985
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 509 tgtcctcccacgccgccgggtcga 532 |||||||||||||||||| ||||| Sbjct: 4513278 tgtcctcccacgccgccgcgtcga 4513301
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcctcccacgccgccgggtc 530 |||||||||||||||||||| Sbjct: 31225503 tcctcccacgccgccgggtc 31225484
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 28740794 gtatgtatgtatgtatactc 28740813
>gb|AC022404.7|AC022404 Homo sapiens chromosome 14 clone CTD-2308C24 and RP11-757H14 map 14q31, complete sequence Length = 232309 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 taaagtctcaatagtattat 65 |||||||||||||||||||| Sbjct: 4286 taaagtctcaatagtattat 4267
>gb|BC044776.2| Mus musculus, clone IMAGE:5361456, mRNA Length = 2123 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tcgtatgtatgtatgtatac 250 |||||||||||||||||||| Sbjct: 1766 tcgtatgtatgtatgtatac 1747
>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence Length = 190773 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 taaagtctcaatagtattat 65 |||||||||||||||||||| Sbjct: 187796 taaagtctcaatagtattat 187777
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 57367 gtatgtatgtatgtatactc 57386
>emb|AL773561.7| Mouse DNA sequence from clone RP23-71D9 on chromosome X, complete sequence Length = 174072 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcc 253 |||||||||||||||||||| Sbjct: 127453 tatgtatgtatgtatactcc 127434
>gb|AC154427.2| Mus musculus BAC clone RP24-200D20 from 16, complete sequence Length = 163687 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 caaatatatcaaggagggagagagcctc 365 |||||| ||| ||||||||||||||||| Sbjct: 969 caaatagatccaggagggagagagcctc 996
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 cctcccacgccgccgggtcg 531 |||||||||||||||||||| Sbjct: 1575293 cctcccacgccgccgggtcg 1575312
>gb|AY552588.1| Trypanosoma cruzi clone C6:24B7 telomeric region Length = 34387 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 acgccgccgggtcgatgttt 537 |||||||||||||||||||| Sbjct: 27425 acgccgccgggtcgatgttt 27406
>emb|BX248499.12| Zebrafish DNA sequence from clone CH211-284A13 in linkage group 19, complete sequence Length = 148683 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 66401 gtatgtatgtatgtatactc 66420
>gb|AY110147.1| Zea mays CL377_-3 mRNA sequence Length = 620 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcctcccacgccgccgggtc 530 |||||||||||||||||||| Sbjct: 199 tcctcccacgccgccgggtc 180
>gb|AC116882.9| Mus musculus chromosome 8, clone RP24-435G18, complete sequence Length = 187290 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 122588 gtatgtatgtatgtatactc 122607
>emb|CT954231.1| Medicago truncatula chromosome 5 clone mth2-166e2, COMPLETE SEQUENCE Length = 122895 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcc 253 |||||||||||||||||||| Sbjct: 22631 tatgtatgtatgtatactcc 22612
>emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2547L24 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203777 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 tagaggaagaggggcagccc 614 |||||||||||||||||||| Sbjct: 101153 tagaggaagaggggcagccc 101134
>gb|AE003534.3| Drosophila melanogaster chromosome 3L, section 51 of 83 of the complete sequence Length = 263717 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aatagtattatacatacata 74 |||||||||||||||||||| Sbjct: 209885 aatagtattatacatacata 209866
>emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-895M11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 231490 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 tagaggaagaggggcagccc 614 |||||||||||||||||||| Sbjct: 12719 tagaggaagaggggcagccc 12700
>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete sequence Length = 208470 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 103113 gtatgtatgtatgtatactc 103132
>emb|AL845506.6| Mouse DNA sequence from clone RP23-401M24 on chromosome 2, complete sequence Length = 92280 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 228 aaatcgtatgtatgtatgtatactccag 255 |||| |||||||||||||| |||||||| Sbjct: 73600 aaatggtatgtatgtatgtgtactccag 73627
>gb|L02306.1|RCCMETAL Ricinus communis metallothionein (RCMIT) mRNA, complete cds Length = 571 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 504 aatcgtatgtatgtatgtat 523
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 atcaccattaattgataatg 223 |||||||||||||||||||| Sbjct: 122681 atcaccattaattgataatg 122700
>gb|AC151579.2| Mus musculus BAC clone RP23-191P7 from 1, complete sequence Length = 204175 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcc 253 |||||||||||||||||||| Sbjct: 27293 tatgtatgtatgtatactcc 27274
>dbj|AP006704.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588c, complete sequence Length = 16978 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 4029 aatcgtatgtatgtatgtat 4048
>gb|AC123793.5| Mus musculus BAC clone RP24-315L18 from chromosome 1, complete sequence Length = 206081 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tatgtatgtatgtatactcc 253 |||||||||||||||||||| Sbjct: 157120 tatgtatgtatgtatactcc 157101
>emb|AL626773.18| Mouse DNA sequence from clone RP23-273M9 on chromosome 4, complete sequence Length = 193852 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gtatgtatgtatgtatactc 252 |||||||||||||||||||| Sbjct: 162012 gtatgtatgtatgtatactc 161993
>emb|AL844547.9| Mouse DNA sequence from clone RP23-216B20 on chromosome 2, complete sequence Length = 210589 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 aatcgtatgtatgtatgtat 248 |||||||||||||||||||| Sbjct: 177590 aatcgtatgtatgtatgtat 177609 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,374,121 Number of Sequences: 3902068 Number of extensions: 6374121 Number of successful extensions: 350049 Number of sequences better than 10.0: 145 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 348476 Number of HSP's gapped (non-prelim): 1566 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
