ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23l22 |
|---|---|
| Clone Library Name | barley_pub |
>CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 33.9 bits (76), Expect = 0.37 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%) Frame = +1 Query: 346 ESSSSVLPNTQCPLKLRSLPLRLTSLYSKDRAITMA---------ESTHSIKAQVSSSTF 498 E++++ P+ K+ SLPL LT A+ E+ + AQV+ + Sbjct: 662 EATATAPPSPAAETKVYSLPLSLTPTGQGGEAMPTTPESPRADFRETGETSPAQVNKAEH 721 Query: 499 SLSYLWPKC-------FIPVKSATTPTTIADLP 576 S S WP F+P ++AT PT + +P Sbjct: 722 SSSSPWPSVNRNVAVGFVPTETATEPTGLRGIP 754
>HIS7_LEGPA (Q5X5X1) Histidine biosynthesis bifunctional protein hisB| [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)] Length = 352 Score = 28.9 bits (63), Expect(2) = 0.96 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 200 TPIPVFSHTTDGVHKHGNVPLR 135 TPIP F+H + V KHG LR Sbjct: 193 TPIPFFTHMLEQVAKHGGFDLR 214 Score = 22.3 bits (46), Expect(2) = 0.96 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -3 Query: 226 YLPVSDTHTHQFLFSVI 176 +LP+S THT + + S I Sbjct: 143 FLPISKTHTWEMVVSAI 159
>HIS7_LEGPL (Q5WX93) Histidine biosynthesis bifunctional protein hisB| [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)] Length = 352 Score = 28.9 bits (63), Expect(2) = 1.2 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 200 TPIPVFSHTTDGVHKHGNVPLR 135 TPIP F+H + V KHG LR Sbjct: 193 TPIPFFTHMLEQVAKHGGFDLR 214 Score = 21.9 bits (45), Expect(2) = 1.2 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -3 Query: 226 YLPVSDTHTHQFLFSVI 176 +LP+S THT + + S I Sbjct: 143 FLPISKTHTWEMVASAI 159
>HIS7_LEGPH (Q5ZW89) Histidine biosynthesis bifunctional protein hisB| [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)] Length = 352 Score = 28.9 bits (63), Expect(2) = 1.2 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 200 TPIPVFSHTTDGVHKHGNVPLR 135 TPIP F+H + V KHG LR Sbjct: 193 TPIPFFTHMLEQVAKHGGFDLR 214 Score = 21.9 bits (45), Expect(2) = 1.2 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -3 Query: 226 YLPVSDTHTHQFLFSVI 176 +LP+S THT + + S I Sbjct: 143 FLPISKTHTWEMVASAI 159
>TATA_PSEAE (Q9HUB5) Sec-independent protein translocase protein tatA/E homolog| Length = 82 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -2 Query: 464 WVLSAIVIALSLEYKEVKRRGSD--RSFRGHWVLGNTEEDDSVD 339 W++ IV+ L K +K GSD + +G NTEEDD D Sbjct: 9 WIVILIVVVLVFGTKRLKNLGSDVGEAIKGFRKAVNTEEDDKKD 52
>GLPD_MYCLE (P53435) Glycerol-3-phosphate dehydrogenase (EC 1.1.99.5)| Length = 585 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -2 Query: 380 HWVLGNTEEDDSVDLLHPDXXXXXXXXXXSGVMEVQLEPLT 258 HW++G T+ D ++DL HP V V PLT Sbjct: 302 HWIIGTTDTDWNLDLAHPAATKADIDYILQTVNTVLATPLT 342
>GLPD2_MYCTU (P64184) Glycerol-3-phosphate dehydrogenase 2 (EC 1.1.99.5)| Length = 585 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -2 Query: 380 HWVLGNTEEDDSVDLLHPDXXXXXXXXXXSGVMEVQLEPLT 258 HW++G T+ D ++DL HP V V PLT Sbjct: 302 HWIIGTTDTDWNLDLAHPAATKADIDYILGTVNAVLATPLT 342
>GLPD2_MYCBO (P64185) Glycerol-3-phosphate dehydrogenase 2 (EC 1.1.99.5)| Length = 585 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -2 Query: 380 HWVLGNTEEDDSVDLLHPDXXXXXXXXXXSGVMEVQLEPLT 258 HW++G T+ D ++DL HP V V PLT Sbjct: 302 HWIIGTTDTDWNLDLAHPAATKADIDYILGTVNAVLATPLT 342
>CCSA_ANTFO (Q85A51) Cytochrome c biogenesis protein ccsA| Length = 339 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = -2 Query: 599 WEYLHVITGRSAIVVGVVALFTGMKHLGHRYDSENVEELTWALMLWVLSAIVIALSL 429 W Y + G + +G+++ + Y S + +E TWAL+ W+LSAI I + + Sbjct: 243 WSYRIISLGSLFLTIGILSGAVWVNEAWGSYWSWDPKE-TWALITWLLSAIHIHIRM 298
>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 30.4 bits (67), Expect = 4.1 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 16/87 (18%) Frame = +1 Query: 346 ESSSSVLPNTQCPLKLRSLPLRLTSLYSKDRAITMA---------ESTHSIKAQVSSSTF 498 E++++ P+ K+ SLPL LT A+ E+ + AQV+ + Sbjct: 662 EATTTPPPSPAAETKVYSLPLSLTPTGQGGEAMPTTPESPGADFRETGETSPAQVNKAEH 721 Query: 499 SLSYLWPKC-------FIPVKSATTPT 558 S S WP F+P ++AT PT Sbjct: 722 SSSSPWPSVNRNVAVGFVPTETATEPT 748
>OR5T1_HUMAN (Q8NG75) Olfactory receptor 5T1 (Olfactory receptor OR11-179)| Length = 326 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -1 Query: 120 LMLVSSTRLRRIFKTMPSFLASHCSDC-IVYILFF 19 L S +R +F MP LA CSD ++ +LFF Sbjct: 178 LSFCGSNEIRHVFCNMPPLLAISCSDTHVIQLLFF 212
>GFRA2_HUMAN (O00451) GDNF family receptor alpha-2 precursor (GFR-alpha-2)| (Neurturin receptor alpha) (NTNR-alpha) (NRTNR-alpha) (TGF-beta-related neurotrophic factor receptor 2) (GDNF receptor beta) (GDNFR-beta) (RET ligand 2) Length = 464 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +1 Query: 268 SSCTSITPEGLDSELLAELSGCKRSTESSSSVLPNTQCPLKLRSLPLR 411 ++CTS+ +GL + ELS C TE +++++P + +K S P R Sbjct: 400 TTCTSVQEQGLKANNSKELSMC--FTELTTNIIPGSNKVIKPNSGPSR 445 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,777,296 Number of Sequences: 219361 Number of extensions: 1662507 Number of successful extensions: 4205 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4204 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
