ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1b22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP192_CARAU (O73686) Cytochrome P450 19 type 2 (EC 1.14.14.1) (O... 31 4.3
2HMB1_TRIGR (P09080) Homeobox protein HB1 (TGHBOX1) (Fragment) 30 7.3
3SOX3_MOUSE (P53784) Transcription factor SOX-3 30 9.5
4NU4M_LATCH (O03173) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 30 9.5
5GUAC_LACAC (Q5FHY3) GMP reductase (EC 1.7.1.7) (Guanosine 5'-mon... 30 9.5
6Y681_PYRAE (Q8ZYP4) UPF0179 protein PAE0681 30 9.5

>CP192_CARAU (O73686) Cytochrome P450 19 type 2 (EC 1.14.14.1) (Ovarian|
           aromatase) (CYPXIXA2) (Estrogen synthetase) (P-450AROM)
          Length = 518

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -3

Query: 132 SWYGAQANLCAAFPTLPSTPMFVL----YHWLPDLQIAGPC 22
           S YGAQ N+C A  TL    + +L    +HW     + GPC
Sbjct: 31  SSYGAQDNVCGAMATLLLLLLCLLLAIRHHWTEKDHVPGPC 71



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>HMB1_TRIGR (P09080) Homeobox protein HB1 (TGHBOX1) (Fragment)|
          Length = 307

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 500 ASGLGKQRFRGRLTA--AGSSLYVHTTSTVSRDHLGRLFSPCK 378
           A+ LG   +RGR+ A  AG+   V   +  + +H  ++ SPCK
Sbjct: 126 AAELGDGSYRGRVNALAAGTGCLVSAAAEPNNNHCSQVMSPCK 168



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>SOX3_MOUSE (P53784) Transcription factor SOX-3|
          Length = 375

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = -3

Query: 312 WPPAAYELN*ILMRQDGTSQSQHAPALSSPLPTDGLPLLHYY------YFPSLPTG 163
           W   AY L   +  Q G +Q    P++SSP P   LP +H Y      Y P +P G
Sbjct: 196 WANGAYSL---VQEQLGYAQP---PSMSSPPPPPALPQMHRYDMAGLQYSPMMPPG 245



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>NU4M_LATCH (O03173) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 461

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = -3

Query: 222 LPTDGLPLLHYYYFPSLPTGGGREWW*PSCSWYGAQANLCAAFPTLPSTPMFVLYHWLPD 43
           L T  +PL+ + Y   L T G   WW                   L   P++ ++ WLP 
Sbjct: 172 LGTLSMPLIQHMYQMKLHTHGDMMWW------------TACLLAFLVKMPLYGVHLWLPK 219

Query: 42  LQIAGPCSSS 13
             +  P + S
Sbjct: 220 AHVEAPIAGS 229



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>GUAC_LACAC (Q5FHY3) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate|
           oxidoreductase) (Guanosine monophosphate reductase)
          Length = 330

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 411 TGYCTGGMYVQARACCCEPASEPLLAQSG 497
           TG+ TGG  + A   C + AS+PL+A  G
Sbjct: 186 TGFGTGGWQLAALRMCSKVASKPLIADGG 214



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>Y681_PYRAE (Q8ZYP4) UPF0179 protein PAE0681|
          Length = 167

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 633 YLLPPECQDCQWWPVCM 683
           + +P EC+DC+ +PVCM
Sbjct: 22  FSIPEECKDCRLYPVCM 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,579,508
Number of Sequences: 219361
Number of extensions: 2015343
Number of successful extensions: 5666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5660
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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