ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479179.1| Oryza sativa (japonica cultivar-group), mRNA 226 7e-56
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 202 1e-48
3dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D... 202 1e-48
4dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic D... 202 1e-48
5gb|BT017733.1| Zea mays clone EL01N0448F05.c mRNA sequence 117 4e-23
6emb|BX005272.6| Zebrafish DNA sequence from clone DKEY-23D7, com... 44 0.54
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
8dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
9ref|XM_635989.1| Dictyostelium discoideum hypothetical protein (... 40 8.4
10gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, co... 40 8.4
11gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
12gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromo... 40 8.4
13gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, com... 40 8.4
14gb|AC127249.4| Mus musculus BAC clone RP24-475B8 from chromosome... 40 8.4
15gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome... 40 8.4
16gb|AC107767.7| Mus musculus chromosome 15, clone RP23-148C19, co... 40 8.4
17gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, compl... 40 8.4
18gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 8.4
19emb|AL138959.20| Human DNA sequence from clone RP11-214O11 on ch... 40 8.4
20gb|AF398105.1| Phytophthora cinnamomi polygalacturonase 1 (pg1),... 40 8.4
21ref|XM_961734.1| PREDICTED: Tribolium castaneum similar to Serin... 40 8.4
22emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome;... 40 8.4
23gb|AF407513.1| Varanus mitchelli UMMZ 210576 16S ribosomal RNA g... 40 8.4
24gb|AF407490.1| Varanus beccari UMFS 10371 16S ribosomal RNA gene... 40 8.4
25gb|AC010618.9| Homo sapiens chromosome 19 clone CTD-3131K8, comp... 40 8.4
26dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 8.4
27gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, compl... 40 8.4
28gb|AC149128.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 8.4
29gb|AC158919.4| Mus musculus chromosome 15, clone RP23-11O12, com... 40 8.4
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
31gb|U23517.1| Caenorhabditis elegans cosmid D1022, complete sequence 40 8.4
32gb|AC008226.10|AC008226 Drosophila melanogaster, chromosome 3R, ... 40 8.4
33gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, r... 40 8.4
34gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, com... 40 8.4
35gb|AC090826.15| Homo sapiens chromosome 15, clone CTD-2311M21, c... 40 8.4
36gb|AC023300.19| Homo sapiens chromosome 15, clone RP11-60L3, com... 40 8.4
37gb|AC090617.16| Homo sapiens chromosome 17, clone RP11-667K14, c... 40 8.4
38emb|BX294114.8| Zebrafish DNA sequence from clone DKEY-152J12 in... 40 8.4
39emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 i... 40 8.4
40gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12... 40 8.4
41gb|AC002350.1|AC002350 Homo sapiens 12q24 PAC RPCI3-424M6 (Roswe... 40 8.4
42emb|AL845530.7| Mouse DNA sequence from clone RP23-281B6 on chro... 40 8.4
43gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4 
>ref|XM_479179.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2121

 Score =  226 bits (114), Expect = 7e-56
 Identities = 207/238 (86%)
 Strand = Plus / Minus

                                                                        
Query: 382  ctctgccagaatcagcttgtgccaaatgaggtgcaatgagggcatccaatttgacaaccc 441
            ||||| |||||||||||  | |||||| ||| |  ||||||||||||||||| |||||||
Sbjct: 2029 ctctgtcagaatcagctctttccaaataaggcgtgatgagggcatccaatttaacaaccc 1970

                                                                        
Query: 442  agagtgcaactgcagacgtcgtttgtggcatcgtttggaagtatacaataatgtcatcca 501
            | ||||||||||| || || ||||||||||| |||||||||||||  | |||||||||||
Sbjct: 1969 acagtgcaactgctgatgttgtttgtggcattgtttggaagtatatgacaatgtcatcca 1910

                                                                        
Query: 502  gatacgaactaaagcttactgctgatgaactttggtacaaccaatcctcatcaattgccc 561
             |||||||| ||||||||| | ||||||||||| ||||| |||||||||||| |||||||
Sbjct: 1909 aatacgaacaaaagcttacagatgatgaacttttgtacagccaatcctcatccattgccc 1850

                                                                      
Query: 562  caacaaaatcaacaagaacctgcaaaagctcaggtaatgatgatgttcgtcgcagccg 619
            | |||||||||||||||||||| |||||||| |  || ||||| ||||||||||||||
Sbjct: 1849 ccacaaaatcaacaagaacctgtaaaagctctgccaaagatgacgttcgtcgcagccg 1792
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  202 bits (102), Expect = 1e-48
 Identities = 177/202 (87%)
 Strand = Plus / Minus

                                                                            
Query: 382      ctctgccagaatcagcttgtgccaaatgaggtgcaatgagggcatccaatttgacaaccc 441
                ||||| |||||||||||  | |||||| ||| |  ||||||||||||||||| |||||||
Sbjct: 25556680 ctctgtcagaatcagctctttccaaataaggcgtgatgagggcatccaatttaacaaccc 25556621

                                                                            
Query: 442      agagtgcaactgcagacgtcgtttgtggcatcgtttggaagtatacaataatgtcatcca 501
                | ||||||||||| || || ||||||||||| |||||||||||||  | |||||||||||
Sbjct: 25556620 acagtgcaactgctgatgttgtttgtggcattgtttggaagtatatgacaatgtcatcca 25556561

                                                                            
Query: 502      gatacgaactaaagcttactgctgatgaactttggtacaaccaatcctcatcaattgccc 561
                 |||||||| ||||||||| | ||||||||||| ||||| |||||||||||| |||||||
Sbjct: 25556560 aatacgaacaaaagcttacagatgatgaacttttgtacagccaatcctcatccattgccc 25556501

                                      
Query: 562      caacaaaatcaacaagaacctg 583
                | ||||||||||||||||||||
Sbjct: 25556500 ccacaaaatcaacaagaacctg 25556479
to top
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score =  202 bits (102), Expect = 1e-48
 Identities = 177/202 (87%)
 Strand = Plus / Minus

                                                                         
Query: 382   ctctgccagaatcagcttgtgccaaatgaggtgcaatgagggcatccaatttgacaaccc 441
             ||||| |||||||||||  | |||||| ||| |  ||||||||||||||||| |||||||
Sbjct: 10653 ctctgtcagaatcagctctttccaaataaggcgtgatgagggcatccaatttaacaaccc 10594

                                                                         
Query: 442   agagtgcaactgcagacgtcgtttgtggcatcgtttggaagtatacaataatgtcatcca 501
             | ||||||||||| || || ||||||||||| |||||||||||||  | |||||||||||
Sbjct: 10593 acagtgcaactgctgatgttgtttgtggcattgtttggaagtatatgacaatgtcatcca 10534

                                                                         
Query: 502   gatacgaactaaagcttactgctgatgaactttggtacaaccaatcctcatcaattgccc 561
              |||||||| ||||||||| | ||||||||||| ||||| |||||||||||| |||||||
Sbjct: 10533 aatacgaacaaaagcttacagatgatgaacttttgtacagccaatcctcatccattgccc 10474

                                   
Query: 562   caacaaaatcaacaagaacctg 583
             | ||||||||||||||||||||
Sbjct: 10473 ccacaaaatcaacaagaacctg 10452
to top
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0560B08
          Length = 128098

 Score =  202 bits (102), Expect = 1e-48
 Identities = 177/202 (87%)
 Strand = Plus / Minus

                                                                         
Query: 382   ctctgccagaatcagcttgtgccaaatgaggtgcaatgagggcatccaatttgacaaccc 441
             ||||| |||||||||||  | |||||| ||| |  ||||||||||||||||| |||||||
Sbjct: 93950 ctctgtcagaatcagctctttccaaataaggcgtgatgagggcatccaatttaacaaccc 93891

                                                                         
Query: 442   agagtgcaactgcagacgtcgtttgtggcatcgtttggaagtatacaataatgtcatcca 501
             | ||||||||||| || || ||||||||||| |||||||||||||  | |||||||||||
Sbjct: 93890 acagtgcaactgctgatgttgtttgtggcattgtttggaagtatatgacaatgtcatcca 93831

                                                                         
Query: 502   gatacgaactaaagcttactgctgatgaactttggtacaaccaatcctcatcaattgccc 561
              |||||||| ||||||||| | ||||||||||| ||||| |||||||||||| |||||||
Sbjct: 93830 aatacgaacaaaagcttacagatgatgaacttttgtacagccaatcctcatccattgccc 93771

                                   
Query: 562   caacaaaatcaacaagaacctg 583
             | ||||||||||||||||||||
Sbjct: 93770 ccacaaaatcaacaagaacctg 93749
to top
>gb|BT017733.1| Zea mays clone EL01N0448F05.c mRNA sequence
          Length = 757

 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                       
Query: 525 gatgaactttggtacaaccaatcctcatcaattgccccaacaaaatcaacaagaacctgc 584
           |||||||||| ||||||||||||  |||| |||||||| |||||||| ||||||||||||
Sbjct: 177 gatgaacttttgtacaaccaatcaacatccattgcccctacaaaatcgacaagaacctgc 118

                                              
Query: 585 aaaagctcaggtaatgatgatgttcgtcgcagccg 619
           |||||||| || |||||||| ||||||||||||||
Sbjct: 117 aaaagctctggcaatgatgacgttcgtcgcagccg 83



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 403 ccaaatgaggtgcaatgagggcatccaatttgacaacccagagtgcaactgcagacgtcg 462
           |||||| ||| ||||||||||||||||||| ||||||||| ||||||||||| || || |
Sbjct: 296 ccaaataaggcgcaatgagggcatccaattggacaacccaaagtgcaactgctgatgttg 237

                                                     
Query: 463 tttgtggcatcgtttggaagtatacaataatgtcatccagat 504
           |||||||||| || || ||||  ||||| |||||||||||||
Sbjct: 236 tttgtggcattgtctgaaagtcgacaatgatgtcatccagat 195
to top
>emb|BX005272.6| Zebrafish DNA sequence from clone DKEY-23D7, complete sequence
          Length = 215838

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 266   gattggaactgatgcaaaaata 287
             ||||||||||||||||||||||
Sbjct: 25775 gattggaactgatgcaaaaata 25796
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 94       aatttctaagtgtttacatta 114
                |||||||||||||||||||||
Sbjct: 32831473 aatttctaagtgtttacatta 32831453
to top
>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413G02
          Length = 155633

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    aatttctaagtgtttacatta 114
             |||||||||||||||||||||
Sbjct: 52878 aatttctaagtgtttacatta 52858
to top
>ref|XM_635989.1| Dictyostelium discoideum hypothetical protein (DDB0206075), partial
            mRNA
          Length = 1878

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 561  ccaacaaaatcaacaagaac 580
            ||||||||||||||||||||
Sbjct: 1740 ccaacaaaatcaacaagaac 1759
to top
>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence
          Length = 185563

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 525    gatgaactttggtacaacca 544
              ||||||||||||||||||||
Sbjct: 148166 gatgaactttggtacaacca 148185
to top
>gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0035I01, complete sequence
          Length = 147813

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   tcaagtacaaaaaggaaatt 63
            ||||||||||||||||||||
Sbjct: 3123 tcaagtacaaaaaggaaatt 3142
to top
>gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromosome 6, complete
              sequence
          Length = 162913

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    aagtatacaataatgtcatc 499
              ||||||||||||||||||||
Sbjct: 136417 aagtatacaataatgtcatc 136436
to top
>gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, complete sequence
          Length = 187304

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     aatttctaagtgtttacattattg 117
              ||||||| ||||||||||||||||
Sbjct: 152610 aatttctcagtgtttacattattg 152587
to top
>gb|AC127249.4| Mus musculus BAC clone RP24-475B8 from chromosome 18, complete sequence
          Length = 137187

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 525    gatgaactttggtacaacca 544
              ||||||||||||||||||||
Sbjct: 136792 gatgaactttggtacaacca 136773
to top
>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence
          Length = 189088

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   gatgaactttggtacaacca 544
             ||||||||||||||||||||
Sbjct: 12156 gatgaactttggtacaacca 12137
to top
>gb|AC107767.7| Mus musculus chromosome 15, clone RP23-148C19, complete sequence
          Length = 191511

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tggaactgatgcaaaaataa 288
             ||||||||||||||||||||
Sbjct: 13540 tggaactgatgcaaaaataa 13521
to top
>gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, complete sequence
          Length = 224994

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 94     aatttctaagtgtttacattattg 117
              ||||||| ||||||||||||||||
Sbjct: 164833 aatttctcagtgtttacattattg 164856
to top
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    caatgagggcatccaatttg 434
              ||||||||||||||||||||
Sbjct: 671378 caatgagggcatccaatttg 671397
to top
>emb|AL138959.20| Human DNA sequence from clone RP11-214O11 on chromosome 13 Contains a
              nucleosome assembly protein 1-like 1 (NAP1L1) pseudogene
              and a ribosomal protein L27a (RPL27A) pseudogene, complete
              sequence
          Length = 168790

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    aagtatacaataatgtcatc 499
              ||||||||||||||||||||
Sbjct: 100561 aagtatacaataatgtcatc 100542
to top
>gb|AF398105.1| Phytophthora cinnamomi polygalacturonase 1 (pg1), polygalacturonase 2
            (pg2), polygalacturonase 3 (pg3), polygalacturonase 4
            (pg4), and polygalacturonase 6 (pg6) genes, complete cds
          Length = 12436

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  ccgacggagatgccgtggct 156
            ||||||||||||||||||||
Sbjct: 1307 ccgacggagatgccgtggct 1288
to top
>ref|XM_961734.1| PREDICTED: Tribolium castaneum similar to Serine-protein kinase ATR
            (Ataxia telangiectasia and Rad3-related protein)
            (LOC655218), mRNA
          Length = 7497

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 557  tgccccaacaaaatcaacaa 576
            ||||||||||||||||||||
Sbjct: 3280 tgccccaacaaaatcaacaa 3299
to top
>emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome; segment 6/7
          Length = 348071

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    atgccgtggcttctgtagag 165
              ||||||||||||||||||||
Sbjct: 232372 atgccgtggcttctgtagag 232353
to top
>gb|AF407513.1| Varanus mitchelli UMMZ 210576 16S ribosomal RNA gene, complete
           sequence; tRNA-Leu gene, complete sequence; NADH
           dehydrogenase subunit 1 (ND1) gene, complete cds;
           tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete
           sequence; NADH dehydrogenase subunit 2 (ND2) gene,
           complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys,
           and tRNA-Tyr genes, complete sequence; and cytochrome c
           oxidase subunit I (COI) gene, partial cds; mitochondrial
           genes for mitochondrial products
          Length = 2780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 338 tcctagctatctcaagcatg 357
           ||||||||||||||||||||
Sbjct: 522 tcctagctatctcaagcatg 541
to top
>gb|AF407490.1| Varanus beccari UMFS 10371 16S ribosomal RNA gene, partial
           sequence; tRNA-Leu gene, complete sequence; NADH
           dehydrogenase subunit 1 (ND1) gene, complete cds;
           tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete
           sequence; NADH dehydrogenase subunit 2 (ND2) gene,
           complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys,
           and tRNA-Tyr genes, complete sequence; and cytochrome c
           oxidase subunit I (COI) gene, partial cds; mitochondrial
           genes for mitochondrial products
          Length = 2790

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 338 tcctagctatctcaagcatg 357
           ||||||||||||||||||||
Sbjct: 521 tcctagctatctcaagcatg 540
to top
>gb|AC010618.9| Homo sapiens chromosome 19 clone CTD-3131K8, complete sequence
          Length = 107226

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 266   gattggaactgatgcaaaaataaa 289
             |||||||||||||||| |||||||
Sbjct: 20236 gattggaactgatgcagaaataaa 20213
to top
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    caatgagggcatccaatttg 434
              ||||||||||||||||||||
Sbjct: 478394 caatgagggcatccaatttg 478375
to top
>gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, complete sequence
          Length = 184877

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     agtacaaaaaggaaattaca 66
              ||||||||||||||||||||
Sbjct: 167398 agtacaaaaaggaaattaca 167379
to top
>gb|AC149128.3| Medicago truncatula chromosome 7 BAC clone mth2-139i2, complete
             sequence
          Length = 93434

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   caaaaataaaagagtagtgg 299
             ||||||||||||||||||||
Sbjct: 64513 caaaaataaaagagtagtgg 64532
to top
>gb|AC158919.4| Mus musculus chromosome 15, clone RP23-11O12, complete sequence
          Length = 193418

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tggaactgatgcaaaaataa 288
             ||||||||||||||||||||
Sbjct: 42461 tggaactgatgcaaaaataa 42442
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 44       tcaagtacaaaaaggaaatt 63
                ||||||||||||||||||||
Sbjct: 29518621 tcaagtacaaaaaggaaatt 29518640
to top
>gb|U23517.1| Caenorhabditis elegans cosmid D1022, complete sequence
          Length = 41204

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    aaagaatttctaagtgttta 109
             ||||||||||||||||||||
Sbjct: 20044 aaagaatttctaagtgttta 20025
to top
>gb|AC008226.10|AC008226 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone
             BACR02B19, complete sequence
          Length = 171286

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   caacaaaatcaacaagaacc 581
             ||||||||||||||||||||
Sbjct: 14277 caacaaaatcaacaagaacc 14258
to top
>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone
              BACR01C11, complete sequence
          Length = 176991

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 562    caacaaaatcaacaagaacc 581
              ||||||||||||||||||||
Sbjct: 160648 caacaaaatcaacaagaacc 160629
to top
>gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, complete sequence
          Length = 159520

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   accctttgcctaatcctctg 386
             ||||||||||||||||||||
Sbjct: 77672 accctttgcctaatcctctg 77653
to top
>gb|AC090826.15| Homo sapiens chromosome 15, clone CTD-2311M21, complete sequence
          Length = 169518

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 572   aacaagaacctgcaaaagctcagg 595
             ||||||||||||| ||||||||||
Sbjct: 50292 aacaagaacctgccaaagctcagg 50269
to top
>gb|AC023300.19| Homo sapiens chromosome 15, clone RP11-60L3, complete sequence
          Length = 147392

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 572   aacaagaacctgcaaaagctcagg 595
             ||||||||||||| ||||||||||
Sbjct: 10795 aacaagaacctgccaaagctcagg 10818
to top
>gb|AC090617.16| Homo sapiens chromosome 17, clone RP11-667K14, complete sequence
          Length = 204630

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 279   gcaaaaataaaagagtagtggcag 302
             ||||||||| ||||||||||||||
Sbjct: 65482 gcaaaaatataagagtagtggcag 65505
to top
>emb|BX294114.8| Zebrafish DNA sequence from clone DKEY-152J12 in linkage group 1,
             complete sequence
          Length = 195651

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tttacattattgtacacaca 125
             ||||||||||||||||||||
Sbjct: 83537 tttacattattgtacacaca 83518
to top
>emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 in linkage group 4,
             complete sequence
          Length = 157921

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   ttggaactgatgcaaaaataaaag 291
             |||||| |||||||||||||||||
Sbjct: 36566 ttggaagtgatgcaaaaataaaag 36543
to top
>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete
              sequence
          Length = 301379

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 562    caacaaaatcaacaagaacc 581
              ||||||||||||||||||||
Sbjct: 212057 caacaaaatcaacaagaacc 212038
to top
>gb|AC002350.1|AC002350 Homo sapiens 12q24 PAC RPCI3-424M6 (Roswell Park Cancer Institute Human
             PAC library) complete sequence
          Length = 167217

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gaccctttgcctaatcctct 385
             ||||||||||||||||||||
Sbjct: 17065 gaccctttgcctaatcctct 17084
to top
>emb|AL845530.7| Mouse DNA sequence from clone RP23-281B6 on chromosome 2, complete
             sequence
          Length = 189809

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    aaagaatttctaagtgttta 109
             ||||||||||||||||||||
Sbjct: 78485 aaagaatttctaagtgttta 78466
to top
>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17,
              complete sequence
          Length = 134631

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     tcaagtacaaaaaggaaatt 63
              ||||||||||||||||||||
Sbjct: 102891 tcaagtacaaaaaggaaatt 102910


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,041,998
Number of Sequences: 3902068
Number of extensions: 6041998
Number of successful extensions: 114382
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114136
Number of HSP's gapped (non-prelim): 246
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top