ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
2dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
3dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
4dbj|AK120796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 1e-42
5dbj|AK059623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
6gb|AY112572.1| Zea mays CL32597_1 mRNA sequence 96 2e-16
7gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 46 0.15
8dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 42 2.4
9gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 2.4
10gb|AC073987.4| Homo sapiens BAC clone RP11-441C24 from 2, comple... 42 2.4
11emb|AL845318.8| Mouse DNA sequence from clone RP23-326F22 on chr... 42 2.4
12dbj|AP006349.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 2.4
13emb|AL732309.9| Mouse DNA sequence from clone RP23-132N23 on chr... 42 2.4
14ref|NM_102359.1| Arabidopsis thaliana unknown protein AT1G25480 ... 40 9.5
15ref|XM_467616.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.5
16ref|XM_461215.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 9.5
17gb|AY343489.1| Catharanthus roseus isolate CrOMT6 flavonoid 4'-O... 40 9.5
18gb|AY634313.1| Xenopus laevis clone 904-4 D7 shirin mRNA, comple... 40 9.5
19gb|AC117252.3| Mus musculus BAC clone RP24-381C17 from chromosom... 40 9.5
20gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, comple... 40 9.5
21ref|XM_721120.1| Plasmodium yoelii yoelii str. 17XNL tubulin sub... 40 9.5
22ref|XM_734169.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.5
23ref|XM_733722.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.5
24ref|XM_670324.1| Plasmodium berghei strain ANKA tubulin beta cha... 40 9.5
25emb|AL590397.7| Human DNA sequence from clone RP11-376O21 on chr... 40 9.5
26emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 9.5
27gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 9.5
28gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Canc... 40 9.5
29emb|AL807812.6| Mouse DNA sequence from clone RP23-255M18 on chr... 40 9.5
30gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig co... 40 9.5
31ref|NM_207070.1| Danio rerio zgc:77364 (zgc:77364), mRNA 40 9.5
32emb|BX248494.25| Zebrafish DNA sequence from clone XXyac-67H7_L,... 40 9.5
33gb|AC016304.8| Homo sapiens, clone RP11-25H11, complete sequence 40 9.5
34gb|AC068875.5| Homo sapiens chromosome 15, clone RP11-720L8, com... 40 9.5
35gb|AC099476.6| Rattus norvegicus BAC CH230-159G8 (Children's Ho... 40 9.5
36dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
37gb|AC079281.4|AC079281 Arabidopsis thaliana chromosome 1 BAC F2J... 40 9.5
38dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
39dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
40gb|AF070947.1|AF070947 Arabidopsis thaliana serine/threonine pro... 40 9.5
41gb|BC066448.1| Danio rerio zgc:77364, mRNA (cDNA clone MGC:77364... 40 9.5
42gb|M58750.1|PFABETUB P.berghei beta tubulin mRNA, complete cds 40 9.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  182 bits (92), Expect = 1e-42
 Identities = 179/208 (86%)
 Strand = Plus / Plus

                                                                           
Query: 345     aactgcaacaggctcctccaccagctccttgaaattggccttatcactcagctcttcgaa 404
               ||||||||||||||||| |||  |||| ||||| || ||||||||||||| |||||  ||
Sbjct: 8971056 aactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttgaaa 8971115

                                                                           
Query: 405     tgcgtaaacaacattctgtagccgggcaacaaactcgattagaagcgacgcaaatgtggc 464
               ||| | |||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 8971116 tgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtggc 8971175

                                                                           
Query: 465     caaggataaggcgcttgcactttgatatgttttcgactccgtgtcttcgagtggcaggtt 524
               |||||| |  || |||||||||| ||||||||| |  |||  |||||| |||||||| ||
Sbjct: 8971176 caaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcagatt 8971235

                                           
Query: 525     tggatagaatgatgttcgagcaggccaa 552
               ||||| ||||||| ||||||||||||||
Sbjct: 8971236 tggatggaatgatcttcgagcaggccaa 8971263
to top
>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0084K06
          Length = 177895

 Score =  182 bits (92), Expect = 1e-42
 Identities = 179/208 (86%)
 Strand = Plus / Plus

                                                                         
Query: 345   aactgcaacaggctcctccaccagctccttgaaattggccttatcactcagctcttcgaa 404
             ||||||||||||||||| |||  |||| ||||| || ||||||||||||| |||||  ||
Sbjct: 18374 aactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttgaaa 18433

                                                                         
Query: 405   tgcgtaaacaacattctgtagccgggcaacaaactcgattagaagcgacgcaaatgtggc 464
             ||| | |||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 18434 tgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtggc 18493

                                                                         
Query: 465   caaggataaggcgcttgcactttgatatgttttcgactccgtgtcttcgagtggcaggtt 524
             |||||| |  || |||||||||| ||||||||| |  |||  |||||| |||||||| ||
Sbjct: 18494 caaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcagatt 18553

                                         
Query: 525   tggatagaatgatgttcgagcaggccaa 552
             ||||| ||||||| ||||||||||||||
Sbjct: 18554 tggatggaatgatcttcgagcaggccaa 18581
to top
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528B02
          Length = 144495

 Score =  182 bits (92), Expect = 1e-42
 Identities = 179/208 (86%)
 Strand = Plus / Plus

                                                                          
Query: 345    aactgcaacaggctcctccaccagctccttgaaattggccttatcactcagctcttcgaa 404
              ||||||||||||||||| |||  |||| ||||| || ||||||||||||| |||||  ||
Sbjct: 136685 aactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttgaaa 136744

                                                                          
Query: 405    tgcgtaaacaacattctgtagccgggcaacaaactcgattagaagcgacgcaaatgtggc 464
              ||| | |||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 136745 tgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtggc 136804

                                                                          
Query: 465    caaggataaggcgcttgcactttgatatgttttcgactccgtgtcttcgagtggcaggtt 524
              |||||| |  || |||||||||| ||||||||| |  |||  |||||| |||||||| ||
Sbjct: 136805 caaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcagatt 136864

                                          
Query: 525    tggatagaatgatgttcgagcaggccaa 552
              ||||| ||||||| ||||||||||||||
Sbjct: 136865 tggatggaatgatcttcgagcaggccaa 136892
to top
>dbj|AK120796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D20, full
            insert sequence
          Length = 1994

 Score =  182 bits (92), Expect = 1e-42
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                        
Query: 345  aactgcaacaggctcctccaccagctccttgaaattggccttatcactcagctcttcgaa 404
            ||||||||||||||||| |||  |||| ||||| || ||||||||||||| |||||  ||
Sbjct: 1762 aactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttgaaa 1703

                                                                        
Query: 405  tgcgtaaacaacattctgtagccgggcaacaaactcgattagaagcgacgcaaatgtggc 464
            ||| | |||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 1702 tgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtggc 1643

                                                                        
Query: 465  caaggataaggcgcttgcactttgatatgttttcgactccgtgtcttcgagtggcaggtt 524
            |||||| |  || |||||||||| ||||||||| |  |||  |||||| |||||||| ||
Sbjct: 1642 caaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcagatt 1583

                                        
Query: 525  tggatagaatgatgttcgagcaggccaa 552
            ||||| ||||||| ||||||||||||||
Sbjct: 1582 tggatggaatgatcttcgagcaggccaa 1555
to top
>dbj|AK059623.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H05, full
            insert sequence
          Length = 1222

 Score =  174 bits (88), Expect = 2e-40
 Identities = 178/208 (85%)
 Strand = Plus / Minus

                                                                        
Query: 345  aactgcaacaggctcctccaccagctccttgaaattggccttatcactcagctcttcgaa 404
            ||||||||||||||||| |||  |||| ||||| || ||||||||||||| |||||  ||
Sbjct: 1013 aactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttgaaa 954

                                                                        
Query: 405  tgcgtaaacaacattctgtagccgggcaacaaactcgattagaagcgacgcaaatgtggc 464
            ||| | |||||| ||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 953  tgcattaacaacgttctgcagtcgggcaacaaactcgattagaagggaggcaaatgtggc 894

                                                                        
Query: 465  caaggataaggcgcttgcactttgatatgttttcgactccgtgtcttcgagtggcaggtt 524
            |||||| |  || |||||||||| ||||||||| |  |||  |||||| |||||||| ||
Sbjct: 893  caaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcagatt 834

                                        
Query: 525  tggatagaatgatgttcgagcaggccaa 552
            ||||| ||||||| ||||||||||||||
Sbjct: 833  tggatggaatgatcttcgagcaggccaa 806
to top
>gb|AY112572.1| Zea mays CL32597_1 mRNA sequence
          Length = 480

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 126/152 (82%)
 Strand = Plus / Plus

                                                                       
Query: 345 aactgcaacaggctcctccaccagctccttgaaattggccttatcactcagctcttcgaa 404
           |||||||  ||||||| ||||  | ||||| || || ||||| ||||||| |||||| ||
Sbjct: 312 aactgcagtaggctccaccacaggatccttaaagttagccttctcactcaactcttcaaa 371

                                                                       
Query: 405 tgcgtaaacaacattctgtagccgggcaacaaactcgattagaagcgacgcaaatgtggc 464
           ||||| ||||||||||||||| | |||||||||||| || || || || |||||||| ||
Sbjct: 372 tgcgttaacaacattctgtagtctggcaacaaactcaatcaggagtgatgcaaatgtagc 431

                                           
Query: 465 caaggataaggcgcttgcactttgatatgttt 496
           |||||| ||||| || || |||| ||||||||
Sbjct: 432 caaggacaaggcactcgcgctttcatatgttt 463
to top
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 73     tcaacctttccatcaagtatggc 95
              |||||||||||||||||||||||
Sbjct: 914637 tcaacctttccatcaagtatggc 914659
to top
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 357     ctcctccaccagctccttgaa 377
               |||||||||||||||||||||
Sbjct: 1409078 ctcctccaccagctccttgaa 1409058
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 371    ccttgaaattggccttatcac 391
              |||||||||||||||||||||
Sbjct: 975626 ccttgaaattggccttatcac 975646
to top
>gb|AC073987.4| Homo sapiens BAC clone RP11-441C24 from 2, complete sequence
          Length = 152351

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 611    aactagcagcaaaggtcttat 631
              |||||||||||||||||||||
Sbjct: 103575 aactagcagcaaaggtcttat 103595
to top
>emb|AL845318.8| Mouse DNA sequence from clone RP23-326F22 on chromosome 2, complete
             sequence
          Length = 202162

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   caatgtcagctcctgagtcca 300
             |||||||||||||||||||||
Sbjct: 57848 caatgtcagctcctgagtcca 57868
to top
>dbj|AP006349.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT48J22, TM0335a,
             complete sequence
          Length = 49197

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   ctaaacagaactggatgataa 231
             |||||||||||||||||||||
Sbjct: 29675 ctaaacagaactggatgataa 29695
to top
>emb|AL732309.9| Mouse DNA sequence from clone RP23-132N23 on chromosome 2, complete
              sequence
          Length = 221859

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 370    tccttgaaattggccttatcactca 394
              |||||||| ||||||||||||||||
Sbjct: 173272 tccttgaacttggccttatcactca 173248
to top
>ref|NM_102359.1| Arabidopsis thaliana unknown protein AT1G25480 mRNA, complete cds
          Length = 1647

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 430  gcaacaaactcgattagaagcgacgcaaatgt 461
            |||||||||||||| | ||| |||||||||||
Sbjct: 1562 gcaacaaactcgatcaaaagagacgcaaatgt 1531
to top
>ref|XM_467616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1755

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 369  ctccttgaaattggccttatcactcagctcttcgaa 404
            ||||||||| |||||  | |||||||||||||||||
Sbjct: 1644 ctccttgaagttggcgctttcactcagctcttcgaa 1609
to top
>ref|XM_461215.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F21274g)
            partial mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  agctcctgagtccaacaagt 306
            ||||||||||||||||||||
Sbjct: 1545 agctcctgagtccaacaagt 1526
to top
>gb|AY343489.1| Catharanthus roseus isolate CrOMT6 flavonoid 4'-O-methyltransferase
            gene, complete cds
          Length = 2215

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  caaggtttccagatgtagga 261
            ||||||||||||||||||||
Sbjct: 1646 caaggtttccagatgtagga 1665
to top
>gb|AY634313.1| Xenopus laevis clone 904-4 D7 shirin mRNA, complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 cagctcctgagtccaacaag 305
           ||||||||||||||||||||
Sbjct: 846 cagctcctgagtccaacaag 865
to top
>gb|AC117252.3| Mus musculus BAC clone RP24-381C17 from chromosome 6, complete sequence
          Length = 129945

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 643   aaagtttgatcagcaatggt 662
             ||||||||||||||||||||
Sbjct: 12024 aaagtttgatcagcaatggt 12043
to top
>gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, complete sequence
          Length = 194448

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    aattaattacagggtgctta 136
              ||||||||||||||||||||
Sbjct: 143390 aattaattacagggtgctta 143371
to top
>ref|XM_721120.1| Plasmodium yoelii yoelii str. 17XNL tubulin subunit beta (PY05711)
           partial mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 536 atgttcgagcaggccaatgtggta 559
           |||||| |||||||||||||||||
Sbjct: 17  atgttcaagcaggccaatgtggta 40
to top
>ref|XM_734169.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000423.04.0)
           partial mRNA
          Length = 474

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 536 atgttcgagcaggccaatgtggta 559
           |||||| |||||||||||||||||
Sbjct: 17  atgttcaagcaggccaatgtggta 40
to top
>ref|XM_733722.1| Plasmodium chabaudi chabaudi hypothetical protein (PC302220.00.0)
           partial mRNA
          Length = 138

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 536 atgttcgagcaggccaatgtggta 559
           |||||| |||||||||||||||||
Sbjct: 17  atgttcaagcaggccaatgtggta 40
to top
>ref|XM_670324.1| Plasmodium berghei strain ANKA tubulin beta chain (PB000164.02.0)
           partial mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 536 atgttcgagcaggccaatgtggta 559
           |||||| |||||||||||||||||
Sbjct: 17  atgttcaagcaggccaatgtggta 40
to top
>emb|AL590397.7| Human DNA sequence from clone RP11-376O21 on chromosome 9 Contains the 3'
              end of the PTPRD gene for protein tyrosine phosphatase,
              receptor type, D (HPTP, PTPD, HPTPD), complete sequence
          Length = 168323

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 574    tctatggttgacgatgaatc 593
              ||||||||||||||||||||
Sbjct: 133261 tctatggttgacgatgaatc 133242
to top
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 287     agctcctgagtccaacaagt 306
               ||||||||||||||||||||
Sbjct: 1695512 agctcctgagtccaacaagt 1695531
to top
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 65      acaacacatcaacctttcca 84
               ||||||||||||||||||||
Sbjct: 2332452 acaacacatcaacctttcca 2332433
to top
>gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 200253

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 643    aaagtttgatcagcaatggt 662
              ||||||||||||||||||||
Sbjct: 122973 aaagtttgatcagcaatggt 122992
to top
>emb|AL807812.6| Mouse DNA sequence from clone RP23-255M18 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 27551

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   cccttgccaactgcaacagg 356
             ||||||||||||||||||||
Sbjct: 16649 cccttgccaactgcaacagg 16668
to top
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
              cluster, cholinesterase, and COLP5alpha genes, complete
              sequence
          Length = 796348

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 477    gcttgcactttgatatgttt 496
              ||||||||||||||||||||
Sbjct: 666471 gcttgcactttgatatgttt 666490
to top
>ref|NM_207070.1| Danio rerio zgc:77364 (zgc:77364), mRNA
          Length = 3930

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  atgataaaagtgagcgacaa 244
            ||||||||||||||||||||
Sbjct: 1502 atgataaaagtgagcgacaa 1483
to top
>emb|BX248494.25| Zebrafish DNA sequence from clone XXyac-67H7_L, complete sequence
          Length = 125031

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    atgataaaagtgagcgacaa 244
              ||||||||||||||||||||
Sbjct: 120051 atgataaaagtgagcgacaa 120070
to top
>gb|AC016304.8| Homo sapiens, clone RP11-25H11, complete sequence
          Length = 164336

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  taactaaacactaaacagaa 220
            ||||||||||||||||||||
Sbjct: 7156 taactaaacactaaacagaa 7137
to top
>gb|AC068875.5| Homo sapiens chromosome 15, clone RP11-720L8, complete sequence
          Length = 166706

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    taactaaacactaaacagaa 220
              ||||||||||||||||||||
Sbjct: 100633 taactaaacactaaacagaa 100614
to top
>gb|AC099476.6| Rattus norvegicus  BAC CH230-159G8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 208229

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 470   ataaggcgcttgcactttgatatg 493
             |||||| |||||||||||||||||
Sbjct: 53072 ataaggtgcttgcactttgatatg 53095
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 369      ctccttgaaattggccttatcactcagctcttcgaa 404
                ||||||||| |||||  | |||||||||||||||||
Sbjct: 30455897 ctccttgaagttggcgctttcactcagctcttcgaa 30455862
to top
>gb|AC079281.4|AC079281 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete
             sequence
          Length = 102540

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 430   gcaacaaactcgattagaagcgacgcaaatgt 461
             |||||||||||||| | ||| |||||||||||
Sbjct: 50463 gcaacaaactcgatcaaaagagacgcaaatgt 50494
to top
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0072H09
          Length = 160541

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 369    ctccttgaaattggccttatcactcagctcttcgaa 404
              ||||||||| |||||  | |||||||||||||||||
Sbjct: 136757 ctccttgaagttggcgctttcactcagctcttcgaa 136722
to top
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0617A09
          Length = 134804

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 369   ctccttgaaattggccttatcactcagctcttcgaa 404
             ||||||||| |||||  | |||||||||||||||||
Sbjct: 61945 ctccttgaagttggcgctttcactcagctcttcgaa 61910
to top
>gb|AF070947.1|AF070947 Arabidopsis thaliana serine/threonine protein phosphatase 2A 65 kDa
           A regulatory subunit alpha isoform gene, promoter region
          Length = 1190

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 430 gcaacaaactcgattagaagcgacgcaaatgt 461
           |||||||||||||| | ||| |||||||||||
Sbjct: 732 gcaacaaactcgatcaaaagagacgcaaatgt 701
to top
>gb|BC066448.1| Danio rerio zgc:77364, mRNA (cDNA clone MGC:77364 IMAGE:6968700),
            complete cds
          Length = 3930

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  atgataaaagtgagcgacaa 244
            ||||||||||||||||||||
Sbjct: 1502 atgataaaagtgagcgacaa 1483
to top
>gb|M58750.1|PFABETUB P.berghei beta tubulin mRNA, complete cds
          Length = 1755

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 536 atgttcgagcaggccaatgtggta 559
           |||||| |||||||||||||||||
Sbjct: 321 atgttcaagcaggccaatgtggta 344


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,070,389
Number of Sequences: 3902068
Number of extensions: 5070389
Number of successful extensions: 83980
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83783
Number of HSP's gapped (non-prelim): 197
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top