| Clone Name | rbags23l16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL121809.6|CNS01DSK Human chromosome 14 DNA sequence BAC C-3028N15 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 213442 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 213 taacctccatcttgcagaaaacaagat 239 ||||||||||||| ||||||||||||| Sbjct: 192233 taacctccatcttccagaaaacaagat 192207
>ref|NM_016105.2| Homo sapiens FK506 binding protein 7 (FKBP7), transcript variant 1, mRNA Length = 1352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 caaggatattttgcagaagaa 194 ||||||||||||||||||||| Sbjct: 508 caaggatattttgcagaagaa 488
>gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, complete sequence Length = 171621 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 caaggatattttgcagaagaa 194 ||||||||||||||||||||| Sbjct: 159687 caaggatattttgcagaagaa 159707
>ref|XM_680301.1| PREDICTED: Danio rerio similar to NHL repeat containing 2 (LOC557264), mRNA Length = 2166 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 tcaagcagcaccactttccct 445 ||||||||||||||||||||| Sbjct: 236 tcaagcagcaccactttccct 216
>gb|AC091712.3| Rattus norvegicus strain Brown Norway clone RP31-64M17, complete sequence Length = 157848 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 catcttgaaaatcaagcagca 434 ||||||||||||||||||||| Sbjct: 26537 catcttgaaaatcaagcagca 26557
>gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete sequence Length = 172828 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 caaggatattttgcagaagaa 194 ||||||||||||||||||||| Sbjct: 79693 caaggatattttgcagaagaa 79713
>gb|AF100751.1|AF100751 Homo sapiens FK506-binding protein FKB23 isoform mRNA, complete cds Length = 1067 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 caaggatattttgcagaagaa 194 ||||||||||||||||||||| Sbjct: 507 caaggatattttgcagaagaa 487
>gb|AC007842.1|AC007842 Homo sapiens chromosome 19, BAC 331191 (CIT-B-471f3), complete sequence Length = 174009 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gcagttttccatcttgaaaat 425 ||||||||||||||||||||| Sbjct: 125455 gcagttttccatcttgaaaat 125475
>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence Length = 181674 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cagaaaacaagatcacacat 246 |||||||||||||||||||| Sbjct: 95915 cagaaaacaagatcacacat 95896
>gb|AC124360.5| Mus musculus BAC clone RP24-502M22 from chromosome 10, complete sequence Length = 184346 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ctcatctacagaaacaacac 368 |||||||||||||||||||| Sbjct: 101427 ctcatctacagaaacaacac 101408
>emb|BX248407.26| Human DNA sequence from clone RP11-453B6 on chromosome 1, complete sequence Length = 141084 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cttcttcctgatgcttgcat 273 |||||||||||||||||||| Sbjct: 16776 cttcttcctgatgcttgcat 16757
>emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 in linkage group 10, complete sequence Length = 187296 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 40 gctaatttgctcattagctgaactgacggaga 71 |||||||| |||||| ||||||||||||||| Sbjct: 19085 gctaatttagtcattaactgaactgacggaga 19054
>emb|AL035404.20|HS144F13 Human DNA sequence from clone RP1-144F13 on chromosome 1p33-34.3 Contains the HEYL gene for hairy/enhancer-of-split related protein with YRPW-like motif, a novel gene, the NT5C1A gene for cytosolic IA 5'-nucleotidase, the HPCAL4 gene for hippocalcin like 4, a novel pseudogene, the 5' end of the PPIE gene for peptidylprolyl isomerase E (cyclophilin E) and six CpG islands, complete sequence Length = 154412 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 cagttttccatcttgaaaat 425 |||||||||||||||||||| Sbjct: 117816 cagttttccatcttgaaaat 117797
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 catcaacaactcggacacccacag 527 ||||||||||||||||| |||||| Sbjct: 13192 catcaacaactcggacatccacag 13169
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 catcaacaactcggacacccacag 527 ||||||||||||||||| |||||| Sbjct: 6594 catcaacaactcggacatccacag 6571
>gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, complete sequence Length = 205925 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 ccactttccctccttttaca 454 |||||||||||||||||||| Sbjct: 68561 ccactttccctccttttaca 68542
>emb|BX927321.6| Mouse DNA sequence from clone RP23-144M4 on chromosome X, complete sequence Length = 233474 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tcttcctgatgcttgcatct 275 |||||||||||||||||||| Sbjct: 86429 tcttcctgatgcttgcatct 86410
>emb|AL512583.11| Mouse DNA sequence from clone RP23-444H3 on chromosome 2, complete sequence Length = 181847 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gcagaagaagaggagaccaa 205 |||||||||||||||||||| Sbjct: 155073 gcagaagaagaggagaccaa 155092
>emb|BX936287.9| Mouse DNA sequence from clone RP23-221M16 on chromosome X, complete sequence Length = 184662 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tcttcctgatgcttgcatct 275 |||||||||||||||||||| Sbjct: 1033 tcttcctgatgcttgcatct 1014
>emb|BX936348.7| Mouse DNA sequence from clone RP23-348D19 on chromosome X, complete sequence Length = 62362 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tcttcctgatgcttgcatct 275 |||||||||||||||||||| Sbjct: 34785 tcttcctgatgcttgcatct 34766
>emb|BX005156.9| Zebrafish DNA sequence from clone CH211-165F21 in linkage group 8, complete sequence Length = 77418 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gctcatctacagaaacaaca 367 |||||||||||||||||||| Sbjct: 29208 gctcatctacagaaacaaca 29189
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 agaagaagaggagaccaaca 207 |||||||||||||||||||| Sbjct: 23047411 agaagaagaggagaccaaca 23047430
>gb|AC154517.2| Mus musculus BAC clone RP24-85L11 from chromosome 12, complete sequence Length = 167631 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tttgcagaagaagaggagac 202 |||||||||||||||||||| Sbjct: 22465 tttgcagaagaagaggagac 22446
>gb|AC139712.1| Homo sapiens BAC clone RP11-754G3 from 2, complete sequence Length = 180898 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 agttttccatcttgaaaatc 426 |||||||||||||||||||| Sbjct: 114429 agttttccatcttgaaaatc 114410
>gb|AC119939.14| Mus musculus chromosome 5, clone RP24-267A23, complete sequence Length = 180700 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cagaaaacaagatcacacat 246 |||||||||||||||||||| Sbjct: 119663 cagaaaacaagatcacacat 119644
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 agaagaagaggagaccaaca 207 |||||||||||||||||||| Sbjct: 122625 agaagaagaggagaccaaca 122644
>emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on chromosome 12, complete sequence Length = 167603 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tttgcagaagaagaggagac 202 |||||||||||||||||||| Sbjct: 14578 tttgcagaagaagaggagac 14597
>gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, complete sequence Length = 197312 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 cagttttccatcttgaaaat 425 |||||||||||||||||||| Sbjct: 86598 cagttttccatcttgaaaat 86579
>gb|AC122116.9| Mus musculus chromosome 7, clone RP23-449M8, complete sequence Length = 173990 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tcattagcaactgctaattt 47 |||||||||||||||||||| Sbjct: 132902 tcattagcaactgctaattt 132921
>emb|AL672050.7| Mouse DNA sequence from clone RP23-315F2 on chromosome X, complete sequence Length = 174151 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tcttcctgatgcttgcatct 275 |||||||||||||||||||| Sbjct: 49554 tcttcctgatgcttgcatct 49535
>emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chromosome 4, complete sequence Length = 214061 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 agaagaagaggagaccaaca 207 |||||||||||||||||||| Sbjct: 109561 agaagaagaggagaccaaca 109542 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,100,914 Number of Sequences: 3902068 Number of extensions: 5100914 Number of successful extensions: 107687 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107531 Number of HSP's gapped (non-prelim): 156 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)