ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23l16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL121809.6|CNS01DSK Human chromosome 14 DNA sequence BAC C-3... 46 0.12
2ref|NM_016105.2| Homo sapiens FK506 binding protein 7 (FKBP7), t... 42 1.9
3gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, compl... 42 1.9
4ref|XM_680301.1| PREDICTED: Danio rerio similar to NHL repeat co... 42 1.9
5gb|AC091712.3| Rattus norvegicus strain Brown Norway clone RP31-... 42 1.9
6gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete... 42 1.9
7gb|AF100751.1|AF100751 Homo sapiens FK506-binding protein FKB23 ... 42 1.9
8gb|AC007842.1|AC007842 Homo sapiens chromosome 19, BAC 331191 (C... 42 1.9
9gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, co... 40 7.7
10gb|AC124360.5| Mus musculus BAC clone RP24-502M22 from chromosom... 40 7.7
11emb|BX248407.26| Human DNA sequence from clone RP11-453B6 on chr... 40 7.7
12emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 i... 40 7.7
13emb|AL035404.20|HS144F13 Human DNA sequence from clone RP1-144F1... 40 7.7
14emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.7
15emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 7.7
16gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, c... 40 7.7
17emb|BX927321.6| Mouse DNA sequence from clone RP23-144M4 on chro... 40 7.7
18emb|AL512583.11| Mouse DNA sequence from clone RP23-444H3 on chr... 40 7.7
19emb|BX936287.9| Mouse DNA sequence from clone RP23-221M16 on chr... 40 7.7
20emb|BX936348.7| Mouse DNA sequence from clone RP23-348D19 on chr... 40 7.7
21emb|BX005156.9| Zebrafish DNA sequence from clone CH211-165F21 i... 40 7.7
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
23gb|AC154517.2| Mus musculus BAC clone RP24-85L11 from chromosome... 40 7.7
24gb|AC139712.1| Homo sapiens BAC clone RP11-754G3 from 2, complet... 40 7.7
25gb|AC119939.14| Mus musculus chromosome 5, clone RP24-267A23, co... 40 7.7
26dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
27emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on ch... 40 7.7
28gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, com... 40 7.7
29gb|AC122116.9| Mus musculus chromosome 7, clone RP23-449M8, comp... 40 7.7
30emb|AL672050.7| Mouse DNA sequence from clone RP23-315F2 on chro... 40 7.7
31emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chro... 40 7.7

>emb|AL121809.6|CNS01DSK Human chromosome 14 DNA sequence BAC C-3028N15 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 213442

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 213    taacctccatcttgcagaaaacaagat 239
              ||||||||||||| |||||||||||||
Sbjct: 192233 taacctccatcttccagaaaacaagat 192207



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>ref|NM_016105.2| Homo sapiens FK506 binding protein 7 (FKBP7), transcript variant 1,
           mRNA
          Length = 1352

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 174 caaggatattttgcagaagaa 194
           |||||||||||||||||||||
Sbjct: 508 caaggatattttgcagaagaa 488



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>gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, complete sequence
          Length = 171621

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 174    caaggatattttgcagaagaa 194
              |||||||||||||||||||||
Sbjct: 159687 caaggatattttgcagaagaa 159707



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>ref|XM_680301.1| PREDICTED: Danio rerio similar to NHL repeat containing 2
           (LOC557264), mRNA
          Length = 2166

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 425 tcaagcagcaccactttccct 445
           |||||||||||||||||||||
Sbjct: 236 tcaagcagcaccactttccct 216



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>gb|AC091712.3| Rattus norvegicus strain Brown Norway clone RP31-64M17, complete
             sequence
          Length = 157848

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 414   catcttgaaaatcaagcagca 434
             |||||||||||||||||||||
Sbjct: 26537 catcttgaaaatcaagcagca 26557



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>gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete sequence
          Length = 172828

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   caaggatattttgcagaagaa 194
             |||||||||||||||||||||
Sbjct: 79693 caaggatattttgcagaagaa 79713



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>gb|AF100751.1|AF100751 Homo sapiens FK506-binding protein FKB23 isoform mRNA, complete cds
          Length = 1067

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 174 caaggatattttgcagaagaa 194
           |||||||||||||||||||||
Sbjct: 507 caaggatattttgcagaagaa 487



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>gb|AC007842.1|AC007842 Homo sapiens chromosome 19, BAC 331191 (CIT-B-471f3), complete sequence
          Length = 174009

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 405    gcagttttccatcttgaaaat 425
              |||||||||||||||||||||
Sbjct: 125455 gcagttttccatcttgaaaat 125475



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>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence
          Length = 181674

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   cagaaaacaagatcacacat 246
             ||||||||||||||||||||
Sbjct: 95915 cagaaaacaagatcacacat 95896



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>gb|AC124360.5| Mus musculus BAC clone RP24-502M22 from chromosome 10, complete sequence
          Length = 184346

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    ctcatctacagaaacaacac 368
              ||||||||||||||||||||
Sbjct: 101427 ctcatctacagaaacaacac 101408



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>emb|BX248407.26| Human DNA sequence from clone RP11-453B6 on chromosome 1, complete
             sequence
          Length = 141084

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   cttcttcctgatgcttgcat 273
             ||||||||||||||||||||
Sbjct: 16776 cttcttcctgatgcttgcat 16757



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>emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 in linkage group 10,
             complete sequence
          Length = 187296

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 40    gctaatttgctcattagctgaactgacggaga 71
             ||||||||  |||||| |||||||||||||||
Sbjct: 19085 gctaatttagtcattaactgaactgacggaga 19054



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>emb|AL035404.20|HS144F13 Human DNA sequence from clone RP1-144F13 on chromosome 1p33-34.3 Contains
              the HEYL gene for hairy/enhancer-of-split related protein
              with YRPW-like motif, a novel gene, the NT5C1A gene for
              cytosolic IA 5'-nucleotidase, the HPCAL4 gene for
              hippocalcin like 4, a novel pseudogene, the 5' end of the
              PPIE gene for peptidylprolyl isomerase E (cyclophilin E)
              and six CpG islands, complete sequence
          Length = 154412

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    cagttttccatcttgaaaat 425
              ||||||||||||||||||||
Sbjct: 117816 cagttttccatcttgaaaat 117797



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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 504   catcaacaactcggacacccacag 527
             ||||||||||||||||| ||||||
Sbjct: 13192 catcaacaactcggacatccacag 13169



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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  catcaacaactcggacacccacag 527
            ||||||||||||||||| ||||||
Sbjct: 6594 catcaacaactcggacatccacag 6571



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>gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, complete sequence
          Length = 205925

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   ccactttccctccttttaca 454
             ||||||||||||||||||||
Sbjct: 68561 ccactttccctccttttaca 68542



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>emb|BX927321.6| Mouse DNA sequence from clone RP23-144M4 on chromosome X, complete
             sequence
          Length = 233474

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tcttcctgatgcttgcatct 275
             ||||||||||||||||||||
Sbjct: 86429 tcttcctgatgcttgcatct 86410



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>emb|AL512583.11| Mouse DNA sequence from clone RP23-444H3 on chromosome 2, complete
              sequence
          Length = 181847

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    gcagaagaagaggagaccaa 205
              ||||||||||||||||||||
Sbjct: 155073 gcagaagaagaggagaccaa 155092



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>emb|BX936287.9| Mouse DNA sequence from clone RP23-221M16 on chromosome X, complete
            sequence
          Length = 184662

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  tcttcctgatgcttgcatct 275
            ||||||||||||||||||||
Sbjct: 1033 tcttcctgatgcttgcatct 1014



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>emb|BX936348.7| Mouse DNA sequence from clone RP23-348D19 on chromosome X, complete
             sequence
          Length = 62362

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tcttcctgatgcttgcatct 275
             ||||||||||||||||||||
Sbjct: 34785 tcttcctgatgcttgcatct 34766



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>emb|BX005156.9| Zebrafish DNA sequence from clone CH211-165F21 in linkage group 8,
             complete sequence
          Length = 77418

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   gctcatctacagaaacaaca 367
             ||||||||||||||||||||
Sbjct: 29208 gctcatctacagaaacaaca 29189



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 188      agaagaagaggagaccaaca 207
                ||||||||||||||||||||
Sbjct: 23047411 agaagaagaggagaccaaca 23047430



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>gb|AC154517.2| Mus musculus BAC clone RP24-85L11 from chromosome 12, complete sequence
          Length = 167631

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tttgcagaagaagaggagac 202
             ||||||||||||||||||||
Sbjct: 22465 tttgcagaagaagaggagac 22446



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>gb|AC139712.1| Homo sapiens BAC clone RP11-754G3 from 2, complete sequence
          Length = 180898

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    agttttccatcttgaaaatc 426
              ||||||||||||||||||||
Sbjct: 114429 agttttccatcttgaaaatc 114410



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>gb|AC119939.14| Mus musculus chromosome 5, clone RP24-267A23, complete sequence
          Length = 180700

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    cagaaaacaagatcacacat 246
              ||||||||||||||||||||
Sbjct: 119663 cagaaaacaagatcacacat 119644



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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1121_A05
          Length = 172668

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    agaagaagaggagaccaaca 207
              ||||||||||||||||||||
Sbjct: 122625 agaagaagaggagaccaaca 122644



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>emb|CT025539.18| Mouse DNA sequence from clone RP23-221K23 on chromosome 12, complete
             sequence
          Length = 167603

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tttgcagaagaagaggagac 202
             ||||||||||||||||||||
Sbjct: 14578 tttgcagaagaagaggagac 14597



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>gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, complete sequence
          Length = 197312

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   cagttttccatcttgaaaat 425
             ||||||||||||||||||||
Sbjct: 86598 cagttttccatcttgaaaat 86579



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>gb|AC122116.9| Mus musculus chromosome 7, clone RP23-449M8, complete sequence
          Length = 173990

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     tcattagcaactgctaattt 47
              ||||||||||||||||||||
Sbjct: 132902 tcattagcaactgctaattt 132921



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>emb|AL672050.7| Mouse DNA sequence from clone RP23-315F2 on chromosome X, complete
             sequence
          Length = 174151

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tcttcctgatgcttgcatct 275
             ||||||||||||||||||||
Sbjct: 49554 tcttcctgatgcttgcatct 49535



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>emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chromosome 4, complete
              sequence
          Length = 214061

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    agaagaagaggagaccaaca 207
              ||||||||||||||||||||
Sbjct: 109561 agaagaagaggagaccaaca 109542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,100,914
Number of Sequences: 3902068
Number of extensions: 5100914
Number of successful extensions: 107687
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107531
Number of HSP's gapped (non-prelim): 156
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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