ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24a13 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 40.8 bits (94), Expect = 0.001 Identities = 20/26 (76%), Positives = 20/26 (76%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD DTIN NY V Sbjct: 926 TLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 36.6 bits (83), Expect = 0.025 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD DTI +Y V Sbjct: 923 TLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 36.6 bits (83), Expect = 0.025 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD DTI +Y V Sbjct: 923 TLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 36.2 bits (82), Expect = 0.033 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD D +N +Y V Sbjct: 924 TLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 35.0 bits (79), Expect = 0.074 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD +TI +Y V Sbjct: 931 TLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 35.0 bits (79), Expect = 0.074 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD +TI +Y V Sbjct: 927 TLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 35.0 bits (79), Expect = 0.074 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD +TI +Y V Sbjct: 679 TLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 33.9 bits (76), Expect = 0.16 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD +TI Y V Sbjct: 931 TLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 33.9 bits (76), Expect = 0.16 Identities = 17/26 (65%), Positives = 18/26 (69%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD +TI Y V Sbjct: 932 TLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 33.1 bits (74), Expect = 0.28 Identities = 16/26 (61%), Positives = 17/26 (65%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESV K K LD DT +Y V Sbjct: 923 TLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 32.7 bits (73), Expect = 0.37 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVV+ K LD +TI Y V Sbjct: 931 TLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 32.7 bits (73), Expect = 0.37 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVV+ K LD +TI Y V Sbjct: 935 TLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 32.0 bits (71), Expect = 0.62 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDTINXNYXV 343 TLKG VESVVK K LD + I +Y + Sbjct: 929 TLKGHVESVVKQKGLDIEAIQQHYTL 954
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 3.1 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -2 Query: 400 VXGEXQGP*HXHHQPXL-----XRVRNLGIGPNNMTSVLERDWNGAP 275 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump| 2) Length = 947 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/19 (73%), Positives = 15/19 (78%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDT 364 TLKG VESVVK K LD +T Sbjct: 923 TLKGHVESVVKLKGLDIET 941
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump| 3) Length = 948 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/19 (73%), Positives = 15/19 (78%) Frame = -3 Query: 420 TLKGXVESVVKXKXLDXDT 364 TLKG VESVVK K LD +T Sbjct: 924 TLKGHVESVVKLKGLDIET 942
>DPO3A_PSEAE (Q9HXZ1) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1173 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +1 Query: 157 IKTSLEDGTTETIYLVALYN*GLVRSAMFLSFMHRKNLKAEL 282 IK D + I LVAL+ G ++S M F++RK+ +AEL Sbjct: 621 IKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEL 662 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,897,024 Number of Sequences: 219361 Number of extensions: 1111983 Number of successful extensions: 1930 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1916 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1930 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
