ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24a13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY136627.1| Hordeum vulgare subsp. vulgare plasma membrane P-... 749 0.0
2emb|AJ344078.1|HVU344078 Hordeum vulgare partial mRNA for plasma... 731 0.0
3emb|Y09815.1|TAPSB5 T.aestivum mRNA for transmembrane proton pum... 428 e-117
4gb|AF384148.1|AF384148 Triticum aestivum H+-ATPase mRNA, partial... 96 1e-16
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
6emb|AL442117.1|H0421H08 Oryza sativa genomic DNA, chromosome X, ... 96 1e-16
7dbj|AK105082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
8dbj|AK100435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
9dbj|AK073066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
10emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4,... 96 1e-16
11gb|AY829002.2| Triticum aestivum plasma membrane H+-ATPase gene,... 86 1e-13
12gb|AY543630.1| Triticum aestivum plasma membrane H+-ATPase (ha1)... 86 1e-13
13gb|DQ090006.1| Puccinellia tenuiflora plasma membrane H+-ATPase ... 48 0.023
14emb|CR387983.8| Zebrafish DNA sequence from clone DKEY-90D6 in l... 42 1.4
15emb|BX005140.18| Zebrafish DNA sequence from clone CH211-11F22, ... 42 1.4
16emb|BX548055.7| Zebrafish DNA sequence from clone CH211-246K22 i... 42 1.4
17ref|XM_817535.1| Trypanosoma brucei TREU927 hypothetical protein... 40 5.7
18gb|AC079175.24| Homo sapiens Xp BAC RP11-122N14 (Roswell Park Ca... 40 5.7
19emb|BX649250.6| Zebrafish DNA sequence from clone DKEY-53B2 in l... 40 5.7
20emb|CR972866.3| RP43-009N23, complete sequence 40 5.7
21emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chrom... 40 5.7 
>gb|AY136627.1| Hordeum vulgare subsp. vulgare plasma membrane P-type proton pump
            ATPase (Ha1) mRNA, complete cds
          Length = 3446

 Score =  749 bits (378), Expect = 0.0
 Identities = 408/420 (97%), Gaps = 1/420 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cttttgtataaaacccacgggnatagcaagcaagtggcagaaaatttgcagtgattattt 60
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 cttttgtataaaacccaaggg-atagcaagcaagtggcagaaaatttgcagtgattattt 3332

                                                                        
Query: 61   ctcgtcttgcttccgcaagatcaccgactagttaggggaaagggtaaaacgattacacca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3331 ctcgtcttgcttccgcaagatcaccgactagttaggggaaagggtaaaacgattacacca 3272

                                                                        
Query: 121  cgccgtgctccaaacacggtataactccactagaacattaaaacctctctagaagacggg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3271 cgccgtgctccaaacacggtataactccactagaacattaaaacctctctagaagacggg 3212

                                                                        
Query: 181  acaaccgaaaccatatatttggtagcactttacaactaggggctggtcagatcagccatg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3211 acaaccgaaaccatatatttggtagcactttacaactaggggctggtcagatcagccatg 3152

                                                                        
Query: 241  tttctttcattcatgcaccggaaaaatcttaaagcggagctccattccaatctcgctcca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3151 tttctttcattcatgcaccggaaaaatcttaaagcggagctccattccaatctcgctcca 3092

                                                                        
Query: 301  atacggatgtcatgttgtttggtccaatgcccaaattcctcacacggngtagttnnggtt 360
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||
Sbjct: 3091 atacggatgtcatgttgtttggtccaatgcccaaattcctcacacggtgtagttttggtt 3032

                                                                        
Query: 361  gatggtgtcnatgtcaaggnccttgancttcaccacngactcaacnnnccccttgagtgt 420
            ||||||||| ||||||||| |||||| ||||||||| ||||||||   ||||||||||||
Sbjct: 3031 gatggtgtcgatgtcaaggcccttgagcttcaccacggactcaacgtgccccttgagtgt 2972
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>emb|AJ344078.1|HVU344078 Hordeum vulgare partial mRNA for plasma membrane H+-ATPase (ha1 gene)
          Length = 2280

 Score =  731 bits (369), Expect = 0.0
 Identities = 405/419 (96%), Gaps = 1/419 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    ttttgtataaaacccacgggnatagcaagcaagtggcagaaaatttgcagtgattatttc 61
            |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 2246 ttttgtataaaacccaaggg-atagcaggcaagtggcagaaaatttgcagtgattatttc 2188

                                                                        
Query: 62   tcgtcttgcttccgcaagatcaccgactagttaggggaaagggtaaaacgattacaccac 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 tcgtcttgcttccgcaagatcaccgactagttaggggaaagggtaaaacgattacaccac 2128

                                                                        
Query: 122  gccgtgctccaaacacggtataactccactagaacattaaaacctctctagaagacggga 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 gccgtgctccaaacacggtataactccactagaacattaaaacctctctagaagacggga 2068

                                                                        
Query: 182  caaccgaaaccatatatttggtagcactttacaactaggggctggtcagatcagccatgt 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 caaccgaaaccatatatttggtagcactttacaactaggggctggtcagatcagccatgt 2008

                                                                        
Query: 242  ttctttcattcatgcaccggaaaaatcttaaagcggagctccattccaatctcgctccaa 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 ttctttcattcatgcaccggaaaaatcttaaagcggagctccattccaatctcgctccaa 1948

                                                                        
Query: 302  tacggatgtcatgttgtttggtccaatgcccaaattcctcacacggngtagttnnggttg 361
            |||||||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||
Sbjct: 1947 tacggatgtcatgttgtttggtccaatgcccaaatttctcacacggtgtagttttggttg 1888

                                                                       
Query: 362  atggtgtcnatgtcaaggnccttgancttcaccacngactcaacnnnccccttgagtgt 420
            |||||||| ||||||||| |||||| ||||||||| ||||||||   ||||||||||||
Sbjct: 1887 atggtgtcgatgtcaaggcccttgagcttcaccacggactcaacgtgccccttgagtgt 1829
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>emb|Y09815.1|TAPSB5 T.aestivum mRNA for transmembrane proton pump, partial
          Length = 863

 Score =  428 bits (216), Expect = e-117
 Identities = 273/290 (94%), Gaps = 3/290 (1%)
 Strand = Plus / Minus

                                                                       
Query: 106 aaaacgattaca-ccacgccgtgctccaaacacggtataactccactagaacattaaaac 164
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aaaacgattacaaccacgccgtgctccaaacacggtataactccactagaacattaaaac 771

                                                                       
Query: 165 ctctctagaagacgggacaaccgaaaccatatatttggtagcactttacaactaggggct 224
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctctctagaagacggg-caaccgaaaccatatatttggtagcactttacaactaggggct 712

                                                                       
Query: 225 ggtcagatcagccatgtttctttcattcatgcaccggaaaaatcttaaagcggagctcca 284
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 711 ggtcagatcagccatgtttgtttcattcattcaccggaaaaatcttaaagcggagctcca 652

                                                                       
Query: 285 ttccaatctcgctccaatacggatgtcatgttgtttggtccaatgcccaaattcctcaca 344
           ||||||||||||||||||||||||||||||||  ||||||||||||| | | ||||||||
Sbjct: 651 ttccaatctcgctccaatacggatgtcatgtttgttggtccaatgccgatactcctcaca 592

                                                             
Query: 345 cggngtagttnnggttgatggtgtcnatgtcaagg-nccttgancttcac 393
           ||| ||||||  ||||||||||||| ||||| |||  |||||| ||||||
Sbjct: 591 cggtgtagttctggttgatggtgtcgatgtccaggccccttgagcttcac 542
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>gb|AF384148.1|AF384148 Triticum aestivum H+-ATPase mRNA, partial cds
          Length = 437

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                       
Query: 331 ccaaattcctcacacggngtagttnnggttgatggtgtcnatgtcaaggnccttganctt 390
           |||| |||||||||||| ||||||  ||||||||||||| ||||||||| |||||| |||
Sbjct: 420 ccaatttcctcacacggtgtagttctggttgatggtgtcgatgtcaaggcccttgagctt 361

                                         
Query: 391 caccacngactcaacnnnccccttgagtgt 420
           |||||| || |||||    |||||||||||
Sbjct: 360 caccacggattcaacgtggcccttgagtgt 331
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 92/100 (92%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                            
Query: 144      actccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggt 203
                ||||||||||||| | ||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct: 33498460 actccactagaacgt-aaaacctctctagaaga-ggga-aaccgga-ccatatatttggt 33498405

                                                        
Query: 204      agcactttacaactaggggctggtcagatcagccatgttt 243
                ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 33498404 agcactttacaacta-gggctgttcagatcagccatgttt 33498366
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>emb|AL442117.1|H0421H08 Oryza sativa genomic DNA, chromosome X, BAC clone: H0421H08, complete
             sequence
          Length = 55574

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 92/100 (92%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                         
Query: 144   actccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggt 203
             ||||||||||||| | ||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct: 12017 actccactagaacgt-aaaacctctctagaaga-ggga-aaccgga-ccatatatttggt 11962

                                                     
Query: 204   agcactttacaactaggggctggtcagatcagccatgttt 243
             ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 11961 agcactttacaacta-gggctgttcagatcagccatgttt 11923
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>dbj|AK105082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C08, full
            insert sequence
          Length = 2062

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 92/100 (92%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                        
Query: 144  actccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggt 203
            ||||||||||||| | ||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct: 1926 actccactagaacgt-aaaacctctctagaaga-ggga-aaccgga-ccatatatttggt 1871

                                                    
Query: 204  agcactttacaactaggggctggtcagatcagccatgttt 243
            ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 1870 agcactttacaacta-gggctgttcagatcagccatgttt 1832
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>dbj|AK100435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088J16, full
            insert sequence
          Length = 3560

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 92/100 (92%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                        
Query: 144  actccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggt 203
            ||||||||||||| | ||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct: 3371 actccactagaacgt-aaaacctctctagaaga-ggga-aaccgga-ccatatatttggt 3316

                                                    
Query: 204  agcactttacaactaggggctggtcagatcagccatgttt 243
            ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 3315 agcactttacaacta-gggctgttcagatcagccatgttt 3277
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>dbj|AK073066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023L01, full
            insert sequence
          Length = 2444

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 92/100 (92%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                        
Query: 144  actccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggt 203
            ||||||||||||| | ||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct: 2300 actccactagaacgt-aaaacctctctagaaga-ggga-aaccgga-ccatatatttggt 2245

                                                    
Query: 204  agcactttacaactaggggctggtcagatcagccatgttt 243
            ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 2244 agcactttacaacta-gggctgttcagatcagccatgttt 2206
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>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13,
             complete sequence
          Length = 152264

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 92/100 (92%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                         
Query: 144   actccactagaacattaaaacctctctagaagacgggacaaccgaaaccatatatttggt 203
             ||||||||||||| | ||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct: 74749 actccactagaacgt-aaaacctctctagaaga-ggga-aaccgga-ccatatatttggt 74694

                                                     
Query: 204   agcactttacaactaggggctggtcagatcagccatgttt 243
             ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 74693 agcactttacaacta-gggctgttcagatcagccatgttt 74655
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>gb|AY829002.2| Triticum aestivum plasma membrane H+-ATPase gene, promoter region and
            complete cds
          Length = 6132

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 338  cctcacacggngtagttnnggttgatggtgtcnatgtcaaggnccttgancttcaccacn 397
            |||||||||| ||||||  ||||||||||||| ||||||||| |||||| ||||||||| 
Sbjct: 6126 cctcacacggtgtagttctggttgatggtgtcgatgtcaaggcccttgagcttcaccacg 6067

                    
Query: 398  gactcaac 405
            || |||||
Sbjct: 6066 gattcaac 6059
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>gb|AY543630.1| Triticum aestivum plasma membrane H+-ATPase (ha1) mRNA, complete cds
          Length = 2856

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 340  tcacacggngtagttnnggttgatggtgtcnatgtcaaggnccttgancttcaccacnga 399
            |||||||| ||||||  ||||||||||||| ||||||||| |||||| ||||||||| ||
Sbjct: 2856 tcacacggtgtagttctggttgatggtgtcgatgtcaaggcccttgagcttcaccacgga 2797

                                 
Query: 400  ctcaacnnnccccttgagtgt 420
             |||||    |||||||||||
Sbjct: 2796 ttcaacgtggcccttgagtgt 2776
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>gb|DQ090006.1| Puccinellia tenuiflora plasma membrane H+-ATPase mRNA, partial cds
          Length = 153

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/54 (83%)
 Strand = Plus / Minus

                                                                 
Query: 349 gtagttnnggttgatggtgtcnatgtcaaggnccttgancttcaccacngactc 402
           ||||||  ||||||||||||| ||||| ||  |||| | ||||||||| |||||
Sbjct: 147 gtagttctggttgatggtgtcgatgtccagccccttcagcttcaccaccgactc 94
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>emb|CR387983.8| Zebrafish DNA sequence from clone DKEY-90D6 in linkage group 21, complete
              sequence
          Length = 131428

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 198    tttggtagcactttacaacta 218
              |||||||||||||||||||||
Sbjct: 112529 tttggtagcactttacaacta 112509
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>emb|BX005140.18| Zebrafish DNA sequence from clone CH211-11F22, complete sequence
          Length = 177312

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   tttggtagcactttacaacta 218
             |||||||||||||||||||||
Sbjct: 40685 tttggtagcactttacaacta 40705
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>emb|BX548055.7| Zebrafish DNA sequence from clone CH211-246K22 in linkage group 20,
              complete sequence
          Length = 105935

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 192    catatatttggtagcacttta 212
              |||||||||||||||||||||
Sbjct: 100126 catatatttggtagcacttta 100146
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>ref|XM_817535.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.3570)
            partial mRNA
          Length = 11706

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  tctctagaagacgggacaac 185
            ||||||||||||||||||||
Sbjct: 5830 tctctagaagacgggacaac 5811
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>gb|AC079175.24| Homo sapiens Xp BAC RP11-122N14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163198

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     agaaaatttgcagtgattat 58
              ||||||||||||||||||||
Sbjct: 121205 agaaaatttgcagtgattat 121224
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>emb|BX649250.6| Zebrafish DNA sequence from clone DKEY-53B2 in linkage group 20, complete
              sequence
          Length = 165729

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    tatttggtagcactttacaa 215
              ||||||||||||||||||||
Sbjct: 127450 tatttggtagcactttacaa 127431
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>emb|CR972866.3| RP43-009N23, complete sequence
          Length = 201804

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   agaaaatttgcagtgattat 58
            ||||||||||||||||||||
Sbjct: 6024 agaaaatttgcagtgattat 6005
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>emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chromosome 11, complete
              sequence
          Length = 210163

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     atagcaagcaagtggcagaa 42
              ||||||||||||||||||||
Sbjct: 104729 atagcaagcaagtggcagaa 104710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,719,141
Number of Sequences: 3902068
Number of extensions: 2719141
Number of successful extensions: 46642
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46576
Number of HSP's gapped (non-prelim): 51
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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