ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinas... 30 2.3
2SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-su... 30 3.8
3TNR1A_MOUSE (P25118) Tumor necrosis factor receptor superfamily ... 29 6.6
4GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152 29 6.6
5TERM_ADECR (Q96682) DNA terminal protein (Bellett protein) (pTP ... 29 6.6
6TERM_ADECC (Q65947) DNA terminal protein (Bellett protein) (pTP ... 29 6.6
7DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) 29 6.6
8SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor 28 8.6

>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
           2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
           kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = +1

Query: 58  STYSNTTEYRKQTHNATQTQPQPGHRVRRPGDTTFVLPQVSFSLFLPIPMIP-L*GGVFR 234
           ST+S T+    Q ++    QP     V+     T  +P +  S   P+P+ P L GG   
Sbjct: 587 STHSKTSAVSSQANS----QPPVQVSVKTQVSVTAAIPHLKTSTLPPLPLPPLLPGGDDM 642

Query: 235 AKQTETGMMIVRRQQEKKEELGEPNYLTRFPAPAFGDRSFMNPHVSPDSPGP 390
               ET   +  +  +K++E    + LT  P P       ++P   PDSP P
Sbjct: 643 DSPKET---LPSKPVKKEKEQRTRHLLTDLPLPPELPGGDLSP---PDSPEP 688



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>SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 632

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 256 MMIVRRQQEKKEELGEPNYLTRFPAPAFGDRSFMNPHV 369
           M+++ R   KK   GE   +   PAPAF D     PH+
Sbjct: 540 MILLHRYYYKKANEGEETTVVPTPAPAFADLEQQVPHI 577



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>TNR1A_MOUSE (P25118) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 454

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 283 KKEELGEPNYLTRFPAPAFGDRSFMNPHVSPDSPG 387
           K+E+ G+P  LT  P+PAF   S  NP +   +PG
Sbjct: 256 KEEKAGKP--LTPAPSPAFSPTSGFNPTLGFSTPG 288



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>GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152|
          Length = 511

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 277 QEKKEELGEPNYLTRFPAPAFGDRSFMNPHVSPDSPGP 390
           Q + + + +P   T  P PAFGD S  NP    +S GP
Sbjct: 438 QPQLDPVAQPQSNTETPIPAFGDESASNPG-EENSSGP 474



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>TERM_ADECR (Q96682) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 723

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 178 SFSLFLPIPMIPL*GGVFRAKQTETGMMIVRRQQEKKEELGEPNYLTRFP 327
           + SL  P P  PL GG F  +  E G  +    + ++ E+ E  ++ R P
Sbjct: 407 ALSLPGPAPCTPLSGGAFELRPRENGRAVTEEMRRRRGEMIE-RFIDRLP 455



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>TERM_ADECC (Q65947) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 608

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 178 SFSLFLPIPMIPL*GGVFRAKQTETGMMIVRRQQEKKEELGEPNYLTRFP 327
           + SL  P P  PL GG F  +  E G  +    + ++ E+ E  ++ R P
Sbjct: 292 ALSLPGPAPCTPLSGGAFELRPRENGRAVTEEMRRRRGEMIE-RFIDRLP 340



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>DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 507

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 85  RKQTHNATQTQPQPGHRVRRPGDTTFVLPQVSFSLFLPIP 204
           ++Q     Q Q Q G +   PG   F+ PQ     F+P+P
Sbjct: 429 QEQQQQQQQQQGQQGQQQGYPGQQAFIPPQQGQPQFMPVP 468



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>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 7   TDSNTSNXTFRSTHPTHSTYSNTTEYRKQTHNATQTQP-QPGHRVRRPGDTT 159
           T + T   T RST   H+T + TT  R  T   T  +P       RRP  TT
Sbjct: 102 TTTTTRRPTTRSTTTRHTTTTTTTTRRPTTTTTTTRRPTTTTTTTRRPTTTT 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,965,928
Number of Sequences: 219361
Number of extensions: 977592
Number of successful extensions: 2444
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2442
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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