>gb|AC161217.7| Mus musculus chromosome 8, clone RP23-80D9, complete sequence
          Length = 234127

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     ctgcactctggtgttgctt 43
              |||||||||||||||||||
Sbjct: 112003 ctgcactctggtgttgctt 112021

>gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complete sequence
          Length = 235023

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    ctgcactctggtgttgctt 43
             |||||||||||||||||||
Sbjct: 55853 ctgcactctggtgttgctt 55835

>gb|AC010618.9| Homo sapiens chromosome 19 clone CTD-3131K8, complete sequence
          Length = 107226

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    actctggtgttgcttttga 47
             |||||||||||||||||||
Sbjct: 97623 actctggtgttgcttttga 97641

>gb|AC007850.29|AC007850 Homo sapiens 3 BAC CTB-237N12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157872

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    tgccactgcactctggtgt 38
             |||||||||||||||||||
Sbjct: 92638 tgccactgcactctggtgt 92620

>emb|AL117693.5|CNS01DRO Human chromosome 14 DNA sequence BAC R-562L8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179598

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     agcgctgccactgcactct 33
              |||||||||||||||||||
Sbjct: 137292 agcgctgccactgcactct 137310

>gb|AC024163.3| Homo sapiens chromosome 3 clone RP11-326O24 map 3p, complete sequence
          Length = 176647

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     tgccactgcactctggtgt 38
              |||||||||||||||||||
Sbjct: 106406 tgccactgcactctggtgt 106388

>gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome 17, complete sequence
          Length = 202649

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 29    actctggtgttgcttttg 46
             ||||||||||||||||||
Sbjct: 92168 actctggtgttgcttttg 92151

>ref|XM_591518.2| PREDICTED: Bos taurus similar to A-kinase anchor protein 12 isoform
           1 (LOC513774), mRNA
          Length = 8187

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 19  ctgccactgcactctggt 36
           ||||||||||||||||||
Sbjct: 309 ctgccactgcactctggt 292

>gb|AC145891.4| Pan troglodytes BAC clone RP43-20A24 from 7, complete sequence
          Length = 194412

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     gctgccactgcactctgg 35
              ||||||||||||||||||
Sbjct: 109179 gctgccactgcactctgg 109162

>gb|AC147112.2| Pan troglodytes BAC clone CH251-555D17 from Y, complete sequence
          Length = 183344

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     ctctggtgttgcttttga 47
              ||||||||||||||||||
Sbjct: 159460 ctctggtgttgcttttga 159477

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 13      acagcgctgccactgcac 30
               ||||||||||||||||||
Sbjct: 3694527 acagcgctgccactgcac 3694510

>gb|AC076968.38| Homo sapiens 12 BAC RP11-686F15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 203038

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 31     tctggtgttgcttttgat 48
              ||||||||||||||||||
Sbjct: 110101 tctggtgttgcttttgat 110118

>gb|AC134303.2| Homo sapiens chromosome 19 clone LLNLR-265H6, complete sequence
          Length = 42236

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    gccactgcactctggtgt 38
             ||||||||||||||||||
Sbjct: 26552 gccactgcactctggtgt 26535

>gb|AC144376.3| Pan troglodytes BAC clone RP43-53D10 from Y, complete sequence
          Length = 212954

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    ctctggtgttgcttttga 47
             ||||||||||||||||||
Sbjct: 23898 ctctggtgttgcttttga 23881

>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part
             of the EPHB2 gene for EphB2 and a novel gene, complete
             sequence
          Length = 126589

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    gctgccactgcactctgg 35
             ||||||||||||||||||
Sbjct: 13120 gctgccactgcactctgg 13137

>emb|AL928834.15| Zebrafish DNA sequence from clone CH211-51E12 in linkage group 4
             Contains the gene for a novel protein (zgc:56546), the
             gene for a novel protein similar to the Tctex-1 family,
             the gene for a novel protein similar to vertebrate tubby
             like protein 4 (TULP4), the gene for a novel protein
             similar to vertebrate mitochondrial ribosomal protein S10
             (MRPS10), the 3' end of a novel gene, two novel genes and
             three CpG islands, complete sequence
          Length = 189764

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                       
Query: 15    agcgctgccactgcactctggtgttg 40
             ||||||| | ||||||||||||||||
Sbjct: 85339 agcgctggcgctgcactctggtgttg 85314

>dbj|BS000541.1| Pan troglodytes chromosome Y clone:PTB-180G05, complete sequences
          Length = 151329

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     ctctggtgttgcttttga 47
              ||||||||||||||||||
Sbjct: 126533 ctctggtgttgcttttga 126550

>gb|AC114495.2| Homo sapiens chromosome 1 clone RP11-490K7, complete sequence
          Length = 174903

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     tgccactgcactctggtg 37
              ||||||||||||||||||
Sbjct: 147718 tgccactgcactctggtg 147701

>gb|AC147115.4| Pan troglodytes BAC clone CH251-550P11 from chromosome y, complete
              sequence
          Length = 200911

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     ctctggtgttgcttttga 47
              ||||||||||||||||||
Sbjct: 188915 ctctggtgttgcttttga 188932

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 30       ctctggtgttgcttttga 47
                ||||||||||||||||||
Sbjct: 12376320 ctctggtgttgcttttga 12376303



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 30      ctctggtgttgcttttga 47
               ||||||||||||||||||
Sbjct: 5586834 ctctggtgttgcttttga 5586851



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 30      ctctggtgttgcttttga 47
               ||||||||||||||||||
Sbjct: 5529399 ctctggtgttgcttttga 5529416



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 30      ctctggtgttgcttttga 47
               ||||||||||||||||||
Sbjct: 2183970 ctctggtgttgcttttga 2183953



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 30      ctctggtgttgcttttga 47
               ||||||||||||||||||
Sbjct: 1865371 ctctggtgttgcttttga 1865388

>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence
          Length = 199776

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    gccactgcactctggtgt 38
             ||||||||||||||||||
Sbjct: 11756 gccactgcactctggtgt 11739

>gb|AC084864.4| Homo sapiens chromosome 7 clone RP11-738B7, complete sequence
          Length = 176562

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 18     gctgccactgcactctgg 35
              ||||||||||||||||||
Sbjct: 163843 gctgccactgcactctgg 163860

>gb|AC084865.3| Homo sapiens chromosome 7 clone RP11-437L1, complete sequence
          Length = 214162

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    gctgccactgcactctgg 35
             ||||||||||||||||||
Sbjct: 85552 gctgccactgcactctgg 85569

>gb|AC159213.3| Pan troglodytes BAC clone CH251-624P14 from chromosome y, complete
             sequence
          Length = 192983

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    ctctggtgttgcttttga 47
             ||||||||||||||||||
Sbjct: 35661 ctctggtgttgcttttga 35644

>gb|AC023880.5|AC023880 Homo sapiens PAC clone RP5-999D10 from 7, complete sequence
          Length = 90422

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    gctgccactgcactctgg 35
             ||||||||||||||||||
Sbjct: 29281 gctgccactgcactctgg 29264

>gb|AC120057.9| Homo sapiens chromosome 17, clone CTD-2545G14, complete sequence
          Length = 198821

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    agcgctgccactgcactc 32
             ||||||||||||||||||
Sbjct: 40758 agcgctgccactgcactc 40741

>gb|AC007742.4|AC007742 Homo sapiens BAC clone RP11-357E16 from Y, complete sequence
          Length = 199174

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     ctctggtgttgcttttga 47
              ||||||||||||||||||
Sbjct: 176384 ctctggtgttgcttttga 176401

>gb|AC024183.4|AC024183 Homo sapiens BAC clone RP11-268K13 from Y, complete sequence
          Length = 163495

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    ctctggtgttgcttttga 47
             ||||||||||||||||||
Sbjct: 28738 ctctggtgttgcttttga 28721

>gb|AC124916.3| Homo sapiens chromosome 3 clone RP11-1029M24, complete sequence
          Length = 207596

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    gcgctgccactgcactct 33
             ||||||||||||||||||
Sbjct: 73379 gcgctgccactgcactct 73362

>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y
          Length = 1351786

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 30     ctctggtgttgcttttga 47
              ||||||||||||||||||
Sbjct: 589871 ctctggtgttgcttttga 589854



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     ctctggtgttgcttttga 47
              ||||||||||||||||||
Sbjct: 283949 ctctggtgttgcttttga 283966

>gb|AC159014.2| Pan troglodytes BAC clone CH251-852A24 from chromosome y, complete
             sequence
          Length = 203162

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    ctctggtgttgcttttga 47
             ||||||||||||||||||
Sbjct: 32861 ctctggtgttgcttttga 32844

>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence
          Length = 154308

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    gcgctgccactgcactct 33
             ||||||||||||||||||
Sbjct: 57285 gcgctgccactgcactct 57268

>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence
          Length = 210193

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 16   gcgctgccactgcactct 33
            ||||||||||||||||||
Sbjct: 9162 gcgctgccactgcactct 9179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,027,009
Number of Sequences: 3902068
Number of extensions: 1027009
Number of successful extensions: 555188
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 553747
Number of HSP's gapped (non-prelim): 1441
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)